Sequence of DPV Homalodisca vitripennis reovirus

Homalodisca vitripennis reovirus isolate Bakersfield segment 8, complete sequence.

ACC No: GU362071

Dated: 2010-09-28 | Length: 1434 | CRC: 1543535966

                
ID   GU362071; SV 1; linear; genomic RNA; STD; VRL; 1434 BP.
XX
AC   GU362071;
XX
DT   28-SEP-2010 (Rel. 106, Created)
DT   28-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Homalodisca vitripennis reovirus isolate Bakersfield segment 8, complete
DE   sequence.
XX
KW   .
XX
OS   Homalodisca vitripennis reovirus
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC   unclassified Phytoreovirus.
XX
RN   [1]
RP   1-1434
RA   Stenger D.C., Sisterson M.S., French R.;
RT   "Population genetics of Homalodisca vitripennis reovirus validates timing
RT   and limited introduction to California of its invasive insect host, the
RT   glassy-winged sharpshooter";
RL   Virology 407(1):53-59(2010).
XX
RN   [2]
RP   1-1434
RA   Stenger D.C.;
RT   ;
RL   Submitted (27-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
XX
CC   GenBank Accession Numbers GU362064-GU362075 represent the complete
CC   genome of Homalodisca vitripennis reovirus Bakersfield isolate.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1434
FT                   /organism="Homalodisca vitripennis reovirus"
FT                   /segment="8"
FT                   /host="Homalodisca vitripennis"
FT                   /isolate="Bakersfield"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:411854"
FT   CDS             22. .1281
FT                   /codon_start=1
FT                   /product="outer capsid protein"
FT                   /protein_id="ADN64755.1"
FT                   /translation="MSRQAWLDTSSLLEAISEYIGRCTYDTFNGFASGDSNALTNLLAQ
FT                   LQIPTVGYMSDPKVPLQNMSNNFIEFMSTTDRCGFMLKKEWFSSDIQPVVSDDFIATYI
FT                   KSRNQVPYADVLRQINYPALQASPDPKLIVRQSAVMRGSDTPYTTPIEPCDAYRSVAGG
FT                   TGNIARMGLLATPPVQNDTFFVAERGRILFGIRSAAAVQGNQQIPIPPWASILQVTNAR
FT                   LYFTDSFFGTSIAGVTATTVPGEAATNVVFPGDANDMVINSDDVVSLSLNGGNISVTLG
FT                   VPRVGFCIAIDGNFTMLANRSQNYYTLTTAIAQNAHLDDFGLSAFLVPTMTALTNVGQA
FT                   GIFSDAINALTTALITNYTTADVAAAIAFNSPWNRFSERMAVIMAAGGIADINVKRLII
FT                   RHLWIITSLIAVFGRYYHPN"
XX
SQ   Sequence 1434 BP; 408 A; 282 C; 331 G; 413 T; 0 other;

gu362071 Length: 1434  28-SEP-2010  Type: N  Check: 1913  ..

       1  ggcaagagag agatctgaga catgtcccgt caagcgtggc tagatacaag
      51  ttctttactc gaagctattt cggagtatat aggacgatgt acttacgata
     101  ctttcaacgg attcgcttct ggcgattcca atgcattaac aaatttgttg
     151  gcacaactac aaataccaac ggttgggtac atgtccgatc cgaaggtacc
     201  acttcaaaat atgtctaata attttattga atttatgtct accactgata
     251  gatgtggttt tatgcttaag aaagagtggt tctcgtctga tatacagccg
     301  gtagtttcag atgactttat tgcgacatac ataaagtcaa gaaatcaagt
     351  gccgtatgct gatgtattga ggcaaataaa ctatccggct ttacaagcat
     401  cgccggatcc aaaattgata gttagacagt cggctgtgat gcgtggctct
     451  gacacgccat ataccacccc aatcgaacca tgtgatgcat acagatccgt
     501  tgctggtggc actggaaata tagctagaat gggattgctg gcaactccac
     551  cagtccaaaa tgatactttc tttgtagctg aacgaggaag gatattgttt
     601  ggtatacgat ccgcggctgc ggtgcaagga aaccagcaga taccaatacc
     651  accatgggca tcaattttgc aagtaacaaa tgctagatta tattttacgg
     701  atagtttttt cggtacttca atagctggtg tgactgctac aacagtacct
     751  ggtgaggcgg cgactaatgt ggttttccca ggtgatgcta atgatatggt
     801  aattaatagt gatgatgtag ttagcttgtc attaaatggc ggcaatatca
     851  gtgtgactct aggtgttcca agggttggtt tttgcatagc aattgatggt
     901  aattttacta tgctggccaa tagaagtcaa aattattata cgttaacaac
     951  ggccattgcg caaaacgcgc atttagatga tttcgggtta tcggcatttt
    1001  tggtgcctac gatgaccgcc ctaacgaacg ttgggcaagc gggcatattc
    1051  agtgacgcaa tcaatgcttt aactactgca ttgattacaa actacacaac
    1101  tgcagatgtc gcagctgcaa tagcatttaa ctctccttgg aatagatttt
    1151  cagagcgtat ggccgtaatt atggcagcag gtggtattgc tgatatcaac
    1201  gtcaaacgat tgatcatcag acatttatgg attattactt cattaatcgc
    1251  cgtgttcggg cgatactatc atccgaatta aaagatatac tttgtaagcc
    1301  cgctgaccct gtaccatcac gtaaggagcg agtaggaaat gacggactcc
    1351  ccaagaatga tgggcggtga tgttctctag gttcctttag cggtgacaaa
    1401  cgctactggc gctggtggtt aaactctcaa tgat