Sequence of DPV Homalodisca vitripennis reovirus

Homalodisca vitripennis reovirus isolate Mentone segment 4, complete sequence.

ACC No: GU369685

Dated: 2010-09-28 | Length: 2469 | CRC: -1367455910

                
ID   GU369685; SV 1; linear; genomic RNA; STD; VRL; 2469 BP.
XX
AC   GU369685;
XX
DT   28-SEP-2010 (Rel. 106, Created)
DT   28-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Homalodisca vitripennis reovirus isolate Mentone segment 4, complete
DE   sequence.
XX
KW   .
XX
OS   Homalodisca vitripennis reovirus
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC   unclassified Phytoreovirus.
XX
RN   [1]
RP   1-2469
RA   Stenger D.C., Sisterson M.S., French R.;
RT   "Population genetics of Homalodisca vitripennis reovirus validates timing
RT   and limited introduction to California of its invasive insect host, the
RT   glassy-winged sharpshooter";
RL   Virology 407(1):53-59(2010).
XX
RN   [2]
RP   1-2469
RA   Stenger D.C.;
RT   ;
RL   Submitted (29-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
XX
CC   GenBank Accession Numbers GU369682-GU369693 represent the complete
CC   genome of Homalodisca vitripennis reovirus Mentone isolate.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2469
FT                   /organism="Homalodisca vitripennis reovirus"
FT                   /segment="4"
FT                   /host="Homalodisca vitripennis"
FT                   /isolate="Mentone"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:411854"
FT   CDS             62. .2311
FT                   /codon_start=1
FT                   /product="zinc finger protein"
FT                   /protein_id="ADN64788.1"
FT                   /translation="MEGALGIIASETGVNPSSKNLKKSQSSKDKQKFTSNIKQNQQSAV
FT                   NSPDSGAWCDDQPLDIDSESSFPSLGQSSRTGPMRTRALDRTALARVRDCVHYSIEFPR
FT                   NKWSNVTFATNSKSSIRYGLDAIRAMSENILTGKTEKIHVLLSSTEYQSIDQDFIGAWE
FT                   RDEKIKIINYEVEDGAKFLSSSTSGVISVFSSIPNQMVSSSAMIIMHDLISLLKSESSI
FT                   RDMVINALATHPSLLPGFSSINHKPGSVTFFEKHLELIDTHSAMHGVNPVNTMSYHLMS
FT                   AKNNDGESAKCPIHPDVAFVALEPTTTKLSYFNKDGHTTGLYCRLTQPPKEDCIYCMSM
FT                   KLAMSEGYPMTLKPSAPVQAQAILMSLVRLVMNIGYMRAGSIVPVEAARTTDHATVVNK
FT                   ICDSINSHHNAARFGISTTTLSINNRPRRVISLCGRSEEQRSLINLIQFWFYGDLNEWG
FT                   YNGMVLVSGNSEVMLFTSGLSDFSSHLVCAGISSKTWQTASGIDNLIEFKTVSKPMHNE
FT                   YLIDVFESSLSKMFEQMVNARLPKDEKIRVTKNNGDARFNFKTLNPKKTYLAIKESFED
FT                   SDCVGDALFRAMIALSSHPALSKCRDITDFSTSFAIKMKLKPMTEDMKAERKKLSNTKS
FT                   LVKKGGSGQSSLPITVNECPVAILSNSFSLNLAKLRELKEKHEGVCEEIKPKMDAKAVS
FT                   ESVEAKMEEYFKPKPISSYLESDESQEDASEREQKEDGEEEEVKKEEENSPQVVE"
XX
SQ   Sequence 2469 BP; 814 A; 433 C; 554 G; 668 T; 0 other;

gu369685 Length: 2469  28-SEP-2010  Type: N  Check: 4689  ..

       1  ggcattttct gctacttaga cgaaatctat ttaacaatcg tgtaatatta
      51  tttagtctgg tatggaaggg gcacttggaa ttatcgcgtc tgaaaccggg
     101  gtgaacccgt cttctaaaaa tttgaagaaa agtcagagtt ctaaagataa
     151  acaaaaattc acatctaaca ttaaacaaaa tcagcagtcg gcagtaaact
     201  caccggatag tggagcatgg tgcgatgacc aaccgctgga tattgattct
     251  gaatcatcat ttccatcact tggtcagtca tcaagaactg gtccgatgcg
     301  gacgagagca ttggatagaa cggcgctcgc cagggttaga gattgtgtgc
     351  actactcaat tgagtttcca cgtaacaaat ggagtaatgt cacatttgct
     401  acaaatagca aatcatctat ccgttatggt ttggatgcta ttcgtgccat
     451  gtcagagaac atattgactg gtaagacaga aaagatccac gtcttattgt
     501  catcaactga gtatcaatct attgatcagg atttcattgg agcatgggag
     551  cgtgatgaaa aaataaaaat tataaattat gaggtcgagg atggagctaa
     601  attcttatca tcatcgacaa gcggtgtcat atcggtgttt agctcaatac
     651  ctaatcaaat ggtttcttca tctgctatga ttataatgca tgatttgata
     701  tcactattaa aatctgagtc aagtatcagg gatatggtaa ttaatgcatt
     751  ggcaacgcac ccatcgctac tccctgggtt tagttccatc aatcacaaac
     801  ctggatctgt gacattcttt gagaagcatt tagagttgat agatactcat
     851  agtgcaatgc atggagttaa tcctgtaaac acaatgagtt accatctgat
     901  gtcggcaaag aacaatgatg gtgagtcggc aaaatgccca attcatccgg
     951  atgttgcgtt cgttgcgcta gaaccaacaa caacaaaatt atcttatttt
    1001  aataaagatg ggcacacaac tgggttatac tgtaggttaa ctcagcctcc
    1051  aaaggaagac tgcatttatt gtatgtcaat gaaactggcg atgtctgaag
    1101  gttacccaat gacgttgaaa ccatcagctc cagttcaggc acaggcgata
    1151  ttgatgtcac ttgtcaggct ggtaatgaat attggctaca tgcgggcagg
    1201  atcgatagtt cccgttgaag ctgcgagaac tacagatcat gcaacagtcg
    1251  tgaacaaaat ctgtgacagt atcaattctc atcataatgc tgccagattt
    1301  gggatttcaa caacaacatt gtctataaac aataggccta gacgtgtgat
    1351  atcgctgtgt ggtagaagtg aagagcaacg cagtttgata aatttgattc
    1401  aattttggtt ctatggtgat ctaaatgaat gggggtacaa tggtatggtc
    1451  ttagtgtcag ggaattcaga ggtgatgttg ttcacgtctg gattaagtga
    1501  tttctcatca catcttgtat gcgcaggcat atcttcaaag acatggcaaa
    1551  ctgcttctgg cattgacaat ttgattgaat ttaaaacggt ttctaaacca
    1601  atgcacaatg agtatctgat cgacgtcttc gaatccagcc tgtcaaagat
    1651  gttcgaacag atggtcaatg caagactgcc aaaagatgag aaaatcaggg
    1701  tcacaaagaa caatggtgat gcaagattca acttcaagac cctaaatcca
    1751  aagaagacgt atttagcaat taaagaaagt tttgaggatt ctgattgtgt
    1801  tggagacgca ctgtttagag cgatgattgc tctatcctca catccagctc
    1851  tatcaaagtg cagggatatt acagatttct caacttcgtt cgcgataaag
    1901  atgaaattga agccaatgac agaggacatg aaggccgaac gaaagaagct
    1951  atcgaatacc aagtcgctag tcaagaaagg cggtagtgga caatcatcac
    2001  taccgataac ggtaaatgaa tgtccagtcg ccatattgtc aaacagcttt
    2051  tcattgaatc tagctaaatt gcgagagttg aaagaaaagc acgaaggcgt
    2101  gtgtgaagag attaaaccta agatggacgc taaagctgtt tcagaaagcg
    2151  tggaggcaaa gatggaagaa tatttcaagc caaagcctat ctcatcatat
    2201  cttgagagtg atgaaagtca agaagacgct agtgagcggg agcaaaaaga
    2251  agatggggaa gaggaagaag taaagaaaga ggaggaaaac tcaccccaag
    2301  tagttgaata aggaagttag agcaaataca gacgtgctgt atatatgtaa
    2351  ttagtgtaaa atatacgtta tatagaatag ttttatatca tatgatggtg
    2401  gtagtagttt agagttactc tgcttagaat acatgactac ctcaatttac
    2451  acgacagcag agtaacgat