Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate Pauma1 segment 2, complete sequence.
ACC No: GU370363
Dated: 2010-09-28 | Length: 3522 | CRC: 657099218
ID GU370363; SV 1; linear; genomic RNA; STD; VRL; 3522 BP.
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AC GU370363;
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DT 28-SEP-2010 (Rel. 106, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Homalodisca vitripennis reovirus isolate Pauma1 segment 2, complete
DE sequence.
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KW .
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OS Homalodisca vitripennis reovirus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC unclassified Phytoreovirus.
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RN [1]
RP 1-3522
RA Stenger D.C., Sisterson M.S., French R.;
RT "Population genetics of Homalodisca vitripennis reovirus validates timing
RT and limited introduction to California of its invasive insect host, the
RT glassy-winged sharpshooter";
RL Virology 407(1):53-59(2010).
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RN [2]
RP 1-3522
RA Stenger D.C.;
RT ;
RL Submitted (30-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC GenBank Accession Numbers GU370362-GU370373 represent the complete
CC genome of Homalodisca vitripennis reovirus Pauma1 isolate.
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FH Key Location/Qualifiers
FH
FT source 1. .3522
FT /organism="Homalodisca vitripennis reovirus"
FT /segment="2"
FT /host="Homalodisca vitripennis"
FT /isolate="Pauma1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2002"
FT /db_xref="taxon:411854"
FT CDS 14. .3469
FT /codon_start=1
FT /product="RNA binding protein"
FT /protein_id="ADN64805.1"
FT /translation="MAYPTDVRNIADLYNVFRDAPNREGLITDIRNGLVRLKNVSKLLS
FT ESEIRNAAAISNITSMLSSLALGMEKVSKSLATLSTTDINRAEVLSSYQSTILKIEAST
FT LAVSRYIKNLSVSLSGFVIGGIYSVCPIPAFLDVEPVIPNAFQKKPNTFDDKHDVYVAL
FT HCSASNLVSDLYKDSIVVYTYAGVTLFTAIYAAETDALTITTLGGIVFSYNLNLDTDQP
FT NGDLFSPLVIYLVYSKNQNYAQVYAIDSTRIQKFIRYASDYTNRLTIEDVSISLGKVNG
FT DVRSVEHSITQVPLLDVRFSSTPTGISNGSFICMMFNCGLIEMLKFITETETVELKYAY
FT QKVVQDAYTKSDVMLASLLSMQSSISALQAATPQLTEDVLTFPSSVAQTCGSLLNLTNT
FT FSTSSVINSDVKQWNIMEQDGAERKDLDGELPTTLSAVNLATSTFHDYVVNVQCTGATQ
FT QRSMSMSISIPKMLDPSTVLSSSLYTDDSNTIIPYSYAKPPNYPATLTQNARYSVSPLA
FT HVMNNDVMPIKNGAVECLKLNTNLNILLTMEIDISDASSSLGGSVHNDFTFMIKQAGGS
FT PLTYSTAFKPVIFTNTDGTRKLKLISVVDLTTLMPADAIYYTLEVAPDAKYVTGADVKM
FT EDTDRGTFTTYTQGNYSYTTTVAIWDVVDYIITRRGNVVYTPPKADYTNVDNKAALITN
FT YKTPFNYFVICDERIYYNGKSLTFVLTAGQTLSYNYFTSPLQNPTVDTYDAGVARNASY
FT LVKMAMQMSSVTQLLSSLTLRVEAMERVMQPSRAQQIAGIVSGVGGLISLAMPLLGAVV
FT VTIGTLISIADPTKQGIDYQSVFNAFTAWCQFAIVARYKYGIMTLNDPKLDTLRFLPKS
FT SIDNFREKPIKIELDGLDETILRGSSTDYIDTGVNIRYNDMQLFGDSKVTAWLNGAVAR
FT TMDNTASFFERNVINTLRNKNLLPMHARVEVIQTEKVGDIYRQTILYAGINEGAFIEGD
FT AYAFRSGGSNSYRFNDYVSGPGRFKAVLESTTEDGTFKAADWSKSGMTQKEIFTVAGEM
FT YPSKTPTNQETQDLYEAIIRDFATTDDSFVLQHHNTMMLPGQLDALEKLLIDNAQNFSY
FT AFVGNNCQNYAEDLVNIITNFKRPQGWVSEASFKQYIQSIYDDL"
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SQ Sequence 3522 BP; 1181 A; 619 C; 744 G; 978 T; 0 other;
gu370363 Length: 3522 28-SEP-2010 Type: N Check: 281 ..
1 ggcgtttgcg acgatggcgt accctacaga cgttcggaat atagctgact
51 tgtataatgt atttcgtgac gctccaaatc gcgaaggttt aatcactgat
101 atcaggaatg gattagtgcg tcttaaaaat gtgtcaaaac tactaagtga
151 aagtgaaatt agaaatgcgg cagccatctc taacataaca agtatgttat
201 catcattagc attaggaatg gaaaaagtgt caaagtcatt agcaactctt
251 tcaactacag atattaacag agcggaggtt ttatcctcat atcaatctac
301 aattctaaag attgaagcgt caacgttggc cgtttcacga tatatcaaaa
351 atttgtcagt atcactatct gggtttgtta ttggagggat ttattcagtt
401 tgtccgattc cagcattcct agatgtggaa ccagttatac cgaatgcgtt
451 tcagaagaag ccaaatacat ttgatgacaa gcatgatgtg tatgtggcgt
501 tgcactgtag tgcatccaat ctagtttcag atttatataa ggacagtatc
551 gtagtataca cttacgctgg agtcactcta tttacggcga tatatgcagc
601 tgagactgat gcactgacta taaccacgct aggaggcatc gtattcagct
651 ataatttgaa tctggataca gaccagccta atggagattt gttttcgcca
701 ttagtgatat acttggtata tagtaaaaat caaaactatg cgcaagtata
751 tgctattgat tcaacacgga tacaaaaatt tataagatac gcatctgatt
801 atacgaatag attgactatt gaagatgtat cgatatcatt gggtaaagta
851 aatggtgatg tgagatcagt tgagcattcg attactcagg tacctttact
901 tgatgtgagg ttctcatcaa caccaacggg tatatctaat gggtcgttca
951 tatgcatgat gttcaattgt ggattaatag aaatgctgaa atttataact
1001 gaaactgaaa cggttgagtt aaaatatgca tatcagaagg tagttcagga
1051 tgcatacaca aaatcagatg ttatgttagc tagcctgcta tcgatgcaga
1101 gttcaatatc tgcattacaa gcagctacac cacaattaac tgaggatgta
1151 ttaacatttc catctagtgt agcacaaaca tgtggttcat tattaaacct
1201 aaccaatact ttttccacat catcagtgat taatagtgat gtaaaacaat
1251 ggaacatcat ggagcaggac ggagctgaac gcaaagactt ggatggtgag
1301 ttaccaacta cactatcagc tgtgaattta gcaacgtcaa cgtttcacga
1351 ctacgttgta aatgtgcaat gtacaggtgc gacgcagcag cgaagtatgt
1401 cgatgagtat ttcaatacca aaaatgttgg atccttcaac cgtattatca
1451 agctcattgt atactgatga ttcgaatacg ataataccat acagttatgc
1501 taaaccacca aattatccgg cgacactcac gcaaaatgca cggtacagcg
1551 tgagcccttt agcacacgtg atgaataatg atgtaatgcc aattaaaaac
1601 ggcgccgtag aatgcctcaa attaaataca aacttgaaca ttttgttaac
1651 aatggaaatt gatatatcag atgcatcctc aagtttgggt ggaagtgttc
1701 ataatgactt cacatttatg ataaagcagg ctggagggtc acccttgacg
1751 tactcaacgg cctttaaacc ggtaatattt acaaatacag acggtactag
1801 aaagctgaag ttgatatcag ttgtagatct aacaacatta atgccagctg
1851 atgctatata ctatacacta gaagtcgcac ctgacgctaa gtatgtaact
1901 ggcgctgacg taaaaatgga ggatacggac agaggaacat ttaccactta
1951 tacacagggt aattactctt atactacaac ggtagcaata tgggacgtag
2001 tagactacat cataacacgg cgaggaaatg ttgtatacac tccaccaaaa
2051 gctgattata caaatgttga taataaagca gcattaatta caaattataa
2101 aactccattt aactatttcg tcatttgtga tgagcggata tattataatg
2151 gtaagtcgtt gacatttgta cttaccgcag gtcaaacgtt gtcttataat
2201 tacttcacca gtccactaca aaatccaacg gttgatacct atgatgcagg
2251 ggtagctcga aatgcgagtt atttagtgaa aatggcaatg caaatgtcat
2301 cagtaacaca gttactttcg agtttaacgt tgagagtaga ggcgatggag
2351 agagtgatgc aaccatcaag agcacagcaa atcgcaggaa ttgtaagtgg
2401 agtgggaggg ctgatatcat tagcaatgcc actgctagga gccgtagtgg
2451 tgacgatagg cacactgata tcaatagccg accctacaaa gcaaggaata
2501 gattatcaat ctgtatttaa tgcatttacg gcttggtgtc aatttgcaat
2551 agtagccagg tataaatatg gaatcatgac gcttaatgat ccgaaattag
2601 atactttaag gtttttgcca aaaagtagta tagacaattt tagagagaaa
2651 ccaataaaaa tagagctaga tggactagat gaaacgatct tgcgtggttc
2701 tagtacagat tatatagata caggcgtaaa tatacgatat aatgatatgc
2751 agctgtttgg agactcgaag gtcacggctt ggttaaatgg agcagtggct
2801 agaactatgg ataatacggc tagtttcttt gagcgcaatg tgattaacac
2851 acttcgtaac aagaacttgc tcccaatgca cgcacgcgta gaagtaatac
2901 aaactgaaaa agtaggtgat atatatagac aaacaatatt atatgccggg
2951 ataaatgaag gtgcatttat cgaaggtgat gcttatgcat tcagatcggg
3001 cggttcaaat agttatcgtt ttaacgacta cgtgagcggg ccggggagat
3051 ttaaagccgt cttagagtct acaactgagg atggtacttt caaagccgct
3101 gattggagta agtcaggaat gacgcagaag gaaatattca cagtagctgg
3151 agaaatgtat ccatcaaaaa ctccaacaaa tcaagagaca caagacctgt
3201 acgaagctat aatacgagat tttgcaacga cggacgattc atttgtgtta
3251 caacatcata acacaatgat gttgcccgga cagctagacg ctctagagaa
3301 attattaatt gataatgctc aaaacttttc atacgccttc gtcggtaata
3351 attgccaaaa ttacgcggag gatttagtga atataataac taacttcaaa
3401 cgccctcagg gctgggtaag tgaagctagt tttaagcaat atatacaatc
3451 aatatacgat gacctgtaga gtagggcaga tccgcagctt cactaacatg
3501 cgtgtatgtg gagtaaaatg at