Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate SC20 segment 5, complete sequence.
ACC No: GU390593
Dated: 2010-09-28 | Length: 2521 | CRC: -499599224
ID GU390593; SV 1; linear; genomic RNA; STD; VRL; 2521 BP.
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AC GU390593;
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DT 28-SEP-2010 (Rel. 106, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Homalodisca vitripennis reovirus isolate SC20 segment 5, complete sequence.
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KW .
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OS Homalodisca vitripennis reovirus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC unclassified Phytoreovirus.
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RN [1]
RP 1-2521
RA Stenger D.C., Sisterson M.S., French R.;
RT "Population genetics of Homalodisca vitripennis reovirus validates timing
RT and limited introduction to California of its invasive insect host, the
RT glassy-winged sharpshooter";
RL Virology 407(1):53-59(2010).
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RN [2]
RP 1-2521
RA Stenger D.C.;
RT ;
RL Submitted (06-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC GenBank Accession Numbers GU390589-GU390600 represent the complete
CC genome of Homalodisca vitripennis reovirus SC20 isolate.
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FH Key Location/Qualifiers
FH
FT source 1. .2521
FT /organism="Homalodisca vitripennis reovirus"
FT /segment="5"
FT /host="Homalodisca vitripennis"
FT /isolate="SC20"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2006"
FT /db_xref="taxon:411854"
FT CDS 27. .2441
FT /codon_start=1
FT /product="minor core protein"
FT /protein_id="ADN64783.1"
FT /translation="MGDDAYCIPNFSQTIDKRVILNVFEACRHRSPIAIIGLPHRDVAV
FT KYSSKLSTGSGTIVYFLHDSTNITNDLFSVFRAVGTQLLMGCQIVIFVTIPTTKLTLNT
FT LKSIGWAFRAAVADFRDTSREDPNLIDFMDTTLDLAPLFNVPKCGIAYYGPTIFSELLE
FT LTNKGLLKTKWYATIDYSMFSRSAITAFAAYMLKAAGIDRKSMKAAVVGYNPPYVWTGL
FT KHGLQVKYLELHVRSPGGLGPRRLILPKLDFKDEPNKVKYVIHNPQIKLLCHDMTFLSI
FT SRNVLYIGSYPATHLEGLNLYGWKLLCVDPKNTPEWAEIMRKKTNADITQIGLPYDFTT
FT PGVFPQYVKKVFGNERFVVMDDSWIDGRAEYEDFQLLKQSYFESVCASDNQMILASVKW
FT HRTKDTTVKYLLALLPQPYGGSIRELRAVFSKHGVSSITIKSSDTEAYLDKFNKMSQSS
FT QIYTQAFMHQLLTTTKDALEYDVPNDTALIASYSLSNSNNSKSRVLQCLDNYAKMKKVV
FT IFGAPNLLRLKFMKEIGLMLDSSIKIKDDLISFSNPSGKKWVDRGYTAEEMQSVGFIEI
FT TVEQMVSLCGGDYAGCGYFVNSSYNDIFSWYIPMWMVGKLMLQDIRTSPSALVKCFTTV
FT IRSLCFVPHRVYYAYRSYMVAKHLAANNVLNTAYTLIGSSDATFIVNSNFSIPHPAGPL
FT NFTAGDKVNISGHLLSLSIAAHFVAAPILLWAHQMKYMTQNRKRDPKIDPLLYFDNKLD
FT KQGSLMQWHSREEVLLACLIVEDYVSMMFNGNYSKSIINDITATMAKVFKA"
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SQ Sequence 2521 BP; 830 A; 417 C; 523 G; 751 T; 0 other;
gu390593 Length: 2521 28-SEP-2010 Type: N Check: 2772 ..
1 ggcatcagtt ggatgtgatt cgaaaaatgg gcgatgacgc ttactgtata
51 ccaaattttt ctcaaactat agacaaaaga gtaatcctaa atgtatttga
101 agcctgtaga cataggtcgc caattgctat tattggctta ccgcatcggg
151 atgttgcggt caaatactca agtaaattat caactggaag cggaactatc
201 gtatacttcc tccacgatag tactaatatt actaatgatt tattttctgt
251 ttttagagcg gttggtactc agctgctaat gggatgtcaa attgttatat
301 ttgtcaccat acccacaact aaattgacgc ttaatacgtt aaaatcaata
351 gggtgggctt tccgcgcggc tgtagctgac ttcagagata catcacgaga
401 agatccaaat ttaatagact ttatggatac tacgcttgac ctagctccat
451 tatttaacgt tccgaaatgc ggaatagcat attatggacc tactatattt
501 tcggaattac tcgaactaac aaacaaagga ttattgaaaa ccaaatggta
551 tgccaccatt gattattcaa tgttctctag atcagcgatt acggcattcg
601 cggcatatat gttaaaagct gccggaattg atagaaaatc aatgaaagcc
651 gcagttgtag gatataatcc accgtatgta tggactgggt taaagcacgg
701 attgcaagtt aaatatttag aattacatgt cagatcacct ggtggattgg
751 gacctaggag gctcattctt ccaaaacttg actttaaaga tgaaccaaac
801 aaggtaaagt atgtgataca taatccacaa attaagctat tatgtcatga
851 tatgactttc ttatctatat caagaaatgt tctatatata ggttcgtatc
901 cagcaactca cttagaaggg ttaaatttat acggatggaa actgctgtgt
951 gttgatccta aaaatacgcc agagtgggct gagataatga ggaagaaaac
1001 taacgcagac attacgcaaa tagggcttcc atatgatttc acaacacctg
1051 gtgtatttcc acaatacgtt aagaaagtat ttgggaatga aagattcgta
1101 gttatggatg attcctggat tgatggtcgg gcggagtatg aagattttca
1151 acttttaaaa caaagttatt tcgagagtgt ttgtgcttct gataaccaaa
1201 tgattctagc gtcggtaaag tggcatagga ccaaagatac taccgtaaag
1251 tatctgctag ctctattacc gcagccgtat ggtggtagca ttcgcgaatt
1301 gcgagcagtt ttcagcaaac atggagtgtc atctattact ataaaaagta
1351 gtgacactga ggcttacttg gataagttca ataaaatgtc acaatcaagt
1401 cagatatata cacaagcttt tatgcatcaa ttattaacaa ccacaaagga
1451 tgcgcttgaa tatgatgtac caaatgatac ggcattaata gcatcatatt
1501 cattatcaaa ttcaaataac tcaaaatcac gagttttgca atgccttgac
1551 aattatgcaa aaatgaagaa ggtagtaata ttcggagctc caaatctgtt
1601 acgacttaag ttcatgaagg aaataggatt aatgttagat agtagtatta
1651 aaataaagga cgatctaatc tcattctcga atccatcggg caaaaaatgg
1701 gtcgatagag gatatactgc agaggagatg caatctgtag gattcatcga
1751 aataacggtt gaacaaatgg tgtcattatg tggaggggac tacgcgggat
1801 gtggttattt cgtgaactct tcttataatg atatattctc atggtatata
1851 ccaatgtgga tggtgggtaa gctaatgctt caggatataa gaacgtcgcc
1901 atcagcatta gtaaaatgtt tcacaacagt aattaggagt ttgtgttttg
1951 tgcctcatcg agtatattat gcatataggt cttatatggt tgcaaagcat
2001 ttagccgcaa ataatgtgtt aaacacagcg tacacattga ttggatcatc
2051 ggacgctacg tttattgtta attcaaattt ttcaatacca catcccgcag
2101 gaccactgaa ttttactgca ggtgataagg ttaatatatc ggggcattta
2151 ctatcgctat ctatagctgc gcattttgtg gcagctccaa tattattatg
2201 ggcgcaccaa atgaaatata tgacacagaa cagaaagaga gatccaaaaa
2251 ttgatccatt gttatatttt gataacaaat tggacaagca gggaagttta
2301 atgcaatggc attcaaggga ggaagtgcta ttggcatgtt taattgttga
2351 agattacgtt agtatgatgt ttaatggaaa ttattccaaa agcatcatta
2401 atgacattac agccacaatg gcgaaagtat tcaaagcgta ggagctcaag
2451 ataggtgtta gtgtcattag accacggtga tacgcattct agggggcaga
2501 gtcatgttac aactatttga t