Sequence of DPV Spissistilus festinus virus 1
Spissistilus festinus virus 1, complete genome.
ACC No: GU979419
Dated: 2010-07-19 | Length: 7951 | CRC: 473764839
ID GU979419; SV 1; linear; genomic RNA; STD; VRL; 7951 BP.
XX
AC GU979419;
XX
DT 19-JUL-2010 (Rel. 105, Created)
DT 19-JUL-2010 (Rel. 105, Last updated, Version 1)
XX
DE Spissistilus festinus virus 1, complete genome.
XX
KW .
XX
OS Spissistilus festinus virus 1
OC Viruses; dsRNA viruses.
XX
RN [1]
RP 1-7951
RX PUBMED; 20541786.
RA Spear A., Sisterson M.S., Yokomi R., Stenger D.C.;
RT "Plant-feeding insects harbor double-stranded RNA viruses encoding a novel
RT proline-alanine rich protein and a polymerase distantly related to that of
RT fungal viruses";
RL Virology 404:304-311(2010).
XX
RN [2]
RP 1-7951
RA Stenger D.C., Spear A.;
RT ;
RL Submitted (05-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7951
FT /organism="Spissistilus festinus virus 1"
FT /host="Spissistilus festinus"
FT /mol_type="genomic RNA"
FT /country="USA:Traver, CA"
FT /collection_date="2008"
FT /db_xref="taxon:862943"
FT gene 573. .3878
FT /gene="PArp"
FT CDS 573. .3878
FT /codon_start=1
FT /gene="PArp"
FT /product="proline-alanine-rich protein"
FT /protein_id="ADK12921.1"
FT /translation="MSGGDLSGPGEPLIQPPPVPIPLQEDGAGSEAVPVAPPTRASMEA
FT SPGEGSPPSSPQGQVQLTGGALGGGDPPQAPLWGAQSPKGENPTSRGRSPPPRASPPPE
FT SPASQPLAPPPSEPNPSIQPPPPSPPPALQPPHDPQPGPSRLPPQHPEPRPPRSAGPPP
FT SARQQQWYTGQTLLYNSVPTGRESWWGAVARVGEDLGPAVVAIGLGFLQPELLPILPAL
FT TAEAEAEIAAATDAAAAWAALRSHLARQEAEASVPPPENLVDALAWYRERVGRPSQHPR
FT LAIPPHRLAVEAATRVPTPTNALGLAITRWASHLFHSHPEKFTKVVVGRNMFGSSVEPH
FT HTDPQDTRFGRRDKQSQPTTVTLGDGSESLWMKLGEHSIHSANLTANLLVDETDISQGV
FT PDFCSKYGTALRNNDTNFQHVANVGLQVGSGVALSTSGGGYDAPVNVWGTVLCTHNGPI
FT PLGDPVARHGLHVHGGPAREMGRFTQTAIASLLQSGVPSERFVGSAINPNLAITSLPAL
FT KNLTASIMEGWEYYDNSLLYAKLWHYVMLNDFFSTFGIAPEAQAFPQGQGPTWINVTDA
FT NLDIYSIPNAISRRDLVFIEGQDIFEVASDLQLIYWIVTSAFRYDGPVGAQTPHQCYTE
FT WPQIGVTVLARRAAPAAPAAAVVPSPTIVSFLTRMATRRNEWDSALKGLYLAMELFGVR
FT LNMNEDEYWPIRTCLSAHNPWVPKVADYNFMFRLLKIFPDIQGDHKPEVGAFISLSAST
FT RTRVVALYNAIMGAAATTVLYDLNITRSLLVSWCTGDVDTPPTFVQIMTEGLNQPQSGN
FT DPQECTFFCQARAAFPKWIGANAASNLFPEDTWNGDFNNNAGAEHAYEVYNAAITPANF
FT TPLIILEWLKVLPFEWGICSARPTLNLREEIRLRGLAAAVGWYANRGSDLYRERAVGDF
FT PMKVVAYGVQVVNALAQGIRLAAVPGVGRQATIWEPYGSESGANPPWGPSAAVPAGDIS
FT YAADIHTLRPCSLMSFDYATDSVWAPTLLGAALGPGEVQRLTCWTGQTAEMSGVILPMV
FT GIQAPPLRLPGRLNLLRIGGVRARVPGVDNVPQGAVEVVAPDALAANPAGNPQ"
FT CDS <3869. .7885
FT /codon_start=1
FT /product="RNA-directed RNA polymerase"
FT /note="RdRp domain of PArp-RdRp fusion protein generated by
FT -1 translational frameshift"
FT /protein_id="ADK12922.1"
FT /translation="PSISGPSASPLVHSGTRTTCEPQSGLYVVYDVPWLEGGGRVSLPA
FT GCASSISVAREVVLLLNYLSLGCRGRAVQDSFVSPYFTSVVIAPPVGDVYKPGYQSATV
FT DDLTIGVPNFSASELKESEYPGFSAQCLQLLDKALSQLMARRLVTTTQRAAIMARVFPA
FT YQDGSRPDVRQQMRESVARAWALPWTEAPGDPDWFTTGGWSYAREANSSVVLPTALAAL
FT ALQSKELAKVMPNLEAQQKRTFQGSRLAGKLALLDDISALLLAAPRDTDVAQDDTGADA
FT PAGLRAITSQWLASAVLYLAGACTGDAAPPLPSLTRAWLVQRNPALLAQVDHLDGSSSP
FT RPYVGIGRDSLIRFPGLTLSRQTHHLHWAERQRVCPALVVRIRSVTARRHLKALNRLFP
FT STSLTDSKHQTTHLAEVVWSYVVGRDLPGSGHPHGDGQNASKSCSPGGGGKWFKDATAS
FT QRLRAVNAILNHIPVGTGQLLTTGAIIAGLGLQHCDLFRDTYLKSGCFWRLPHQIGGVV
FT KAVGTYIRKCAAGLQGNPLSLDQVTQLAYYDLLTGRSKNVTNWQEEIANRCTHTYHIRR
FT PCLAWQVNDKGDLRATWVEDSDNLNPRLMKRDGHFYSRLRSILMRVCEPLVTARNTREP
FT LDKFYARRHEWIASGSSAGARAKISIRKGRLGRGSHLMAEEVKVSKRAWAEATPLSSVL
FT EALALSQPREVAHASEKYENGKARAIYGVEPMHYVINTYATKGFEERLHLLPGLEKGAS
FT GSQACALEVRRALITRDPDLECTMLDYADFNRHHTPEAQSLLFDVFARLGKTKGAHPDW
FT VAANLWVARAKKQLWALFPGETEPRKVRQGMFSGTRSTDLINTLLNLAYFEMAKEWLEV
FT QCGLAPTQLYHVHQGDDVWVSNGNPLWARALYYCLNNMGFIFQGSKQMFGPGRGEYLRV
FT LYSGGRARGYFARSLANYLLRPIQNASSADPLSWARNISDGTSLLARRGLTPRMALALY
FT MDAARFWVRARAHPKDNAPVSIPLPVCWLPGIQGGLGSPPPTCLWLPELDQQLGLALPV
FT MRSSINVENFTAPTLMTDDWIAHVSKQAYRLTRHPEMPSPNLKMAGLRDDIIMANYVND
FT LAEYLPERGWAQYKRDWAELRTSVGKRLASMSSGAIIASRTEELGQQLTSIQAWIGYGH
FT PPSHIPAYPYLRSHVDGLDLGEVGFDTPLENLRDKLSSIITRSVFKNENTLARVTGLTR
FT LDAISLILAEADVSGFGDADVAGVLGPLLTSKNAQMVDLLLGSLGDLVPGLRAYVNNAY
FT WQHVQSVWIAQLTPMAITHPGITPLQCVSADKRGTAQWLYQTIAASQVATSVVY"
XX
SQ Sequence 7951 BP; 1649 A; 2355 C; 2334 G; 1613 T; 0 other;
gu979419 Length: 7951 19-JUL-2010 Type: N Check: 8806 ..
1 gtcacacacc cacccgtgtg tgttcggctt gcggggaaac ttactgcttg
51 caggaacgaa aaacaagagc agcacaaccg aacacacacg agtgtcccgt
101 agggaccgag tcgggtgtgt tgatgcaaag aagagagaag ccgacagctc
151 tctactaggc tgggggatag ctctagcggg atgtatccgc tttgggattt
201 tctgcccagt gcccaaaatc agggccgcca attcgactta aaagggattg
251 gatggcgcct gtgccaaggg tgctaccaag cacctggagt gccgatcgac
301 tacaacgggt cataggcatg gccagctcag gctgggccca gcctgctagt
351 aggggggata gtcacctggg ggatccaggg tatcgccaag tcaggtatcc
401 actgttcttt gcttttgcca ggtgctcagc cgtttaactg agcaaattgc
451 taggtcccag ccgtatctgg atttattatc ttcgctgttg tttgacagtg
501 ctataaccct gctactctcc ttactctacc ctctcctttt gattcccatt
551 ctggattcga ctggagatag acatgagcgg aggagattta tcaggacccg
601 gggagccact cattcagcct cctccggtac cgattcctct tcaggaggat
651 ggtgctggct cagaagcagt cccagtggct cctccaacga gggcctcgat
701 ggaggccagc cctggggagg gttccccccc ctcctccccc caagggcagg
751 tacagttaac agggggggcc ttaggcgggg gagatccgcc ccaagcgccc
801 ctttgggggg cgcaaagtcc aaagggggaa aaccccacca gtcggggaag
851 aagcccacct ccaagggcaa gcccaccacc cgaaagcccg gcgtcacagc
901 cactcgcccc accaccctcc gaacccaacc cctcgattca gccaccaccc
951 ccgtcaccac ccccagcact acaaccacca cacgacccac aacccggtcc
1001 gtcacggctg cctccacaac atccggagcc acgcccccct cggtcggcgg
1051 gtccaccacc gtcagcacgc cagcagcagt ggtacaccgg ccagaccctc
1101 ctgtacaact cagtcccaac tggacgagag tcgtggtggg gggcagtggc
1151 gcgggtagga gaggatctag ggccggcggt cgtcgccatt gggcttgggt
1201 tcttgcaacc cgagctcctt ccaatactcc cagccctgac ggctgaagcg
1251 gaggcagaga ttgccgccgc aacggacgct gctgcagcct gggctgctct
1301 gcgctcccac ttggcccgac aggaagcgga ggcctccgtg ccccctcctg
1351 agaatctagt cgacgcgctg gcctggtatc gtgaaagggt cgggcggccc
1401 agccagcacc cccggctggc cattcccccc caccgactag cagttgaggc
1451 ggccactagg gtgcccaccc ctactaacgc actggggttg gctatcaccc
1501 gttgggcgtc ccacttgttc cactcccatc cagaaaagtt caccaaagtg
1551 gtggttgggc gaaacatgtt tgggagtagc gtcgaacccc accacactga
1601 cccccaagat acgcggtttg ggcggagaga caagcaaagc cagccgacaa
1651 ccgtgactct cggtgacggt tccgaatccc tgtggatgaa gttaggtgag
1701 cattccatcc attcggccaa tttgaccgcc aacctattag tggatgagac
1751 tgacatttcc caaggtgtgc ctgacttttg ctccaaatac ggaacggcct
1801 tgaggaacaa tgacaccaac ttccagcacg tggcgaatgt aggcctgcaa
1851 gttggcagtg gggttgccct ctccacatcc gggggtgggt acgatgctcc
1901 tgttaatgtg tggggcaccg tgttgtgtac ccacaacgga cctatcccct
1951 taggcgaccc cgtcgcccgc catgggctgc acgttcacgg ggggcccgcg
2001 cgtgagatgg gtcgtttcac ccaaacagcg atcgcgtcgc tcctccagag
2051 cggggtgccc agtgagcggt tcgtaggttc ggccattaac ccgaaccttg
2101 caataacgag cctgcccgcc ctcaagaatt tgacggcaag cataatggag
2151 ggttgggagt actatgacaa ctcgctccta tatgccaaat tgtggcacta
2201 cgtcatgctc aacgacttct tctccacgtt tggcatcgcg ccggaagctc
2251 aggcatttcc ccaggggcag ggtcctacct ggataaacgt cacggatgcc
2301 aacctcgaca tttactccat ccccaacgcc atatcgcgga gggatctggt
2351 cttcatcgag ggacaggata tctttgaagt tgcatctgac ctgcaactca
2401 tatattggat cgtgacatcc gcgttccgtt atgacggacc cgttggagcc
2451 caaacccccc accagtgtta cacggagtgg cctcagatcg gagtcaccgt
2501 cctagctcgg cgcgctgccc ccgccgcccc tgctgctgca gtggtcccat
2551 cgcctaccat tgtgagtttc ctcactagga tggcaactag gcggaacgag
2601 tgggactcag ccctgaaggg gctgtatctc gccatggagc tattcggggt
2651 taggctcaac atgaatgaag acgagtactg gcctatcagg acgtgcctgt
2701 ccgcccacaa tccctgggtt cccaaggtgg ccgactacaa cttcatgttt
2751 aggctgctca aaatcttccc tgatatccag ggggatcaca agccagaggt
2801 aggggctttc atcagcctga gcgccagcac ccggacccgt gttgtggcgc
2851 tatacaatgc catcatgggg gcagcggcca ccactgtcct gtatgacctc
2901 aacataacca ggtcattgct ggtgtcctgg tgcactggag acgtggacac
2951 acctcccacc tttgtccaaa taatgacgga ggggctcaac cagccccagt
3001 caggcaacga ccctcaggag tgcaccttct tctgccaggc cagggctgca
3051 ttccctaagt ggataggtgc caatgctgca tccaatctct tccccgagga
3101 cacgtggaac ggggatttta acaacaacgc gggggccgag catgcatatg
3151 aagtgtacaa tgctgccatc acaccggcca actttacccc gttgataata
3201 ttggaatggc ttaaggtgtt gcccttcgag tggggcattt gtagtgcgcg
3251 ccctacactg aacttgaggg aggagatccg gctccgcgga ctggccgcgg
3301 cggttgggtg gtatgccaat cgaggatcag atctctaccg cgagagggca
3351 gtgggtgact tccccatgaa ggtggtagcg tatggagtgc aggtcgttaa
3401 tgcgctggcc cagggtatta ggttggctgc tgtgcccggt gttggcaggc
3451 aggccaccat ttgggagcct tatggcagcg agagtggggc taaccccccg
3501 tggggcccca gcgctgctgt cccggcgggg gatatctcat acgccgcaga
3551 catacacaca ctcaggcctt gcagcctcat gtcgtttgat tacgccactg
3601 actcggtgtg ggcccctacc ttgttggggg cagcactcgg gcctggagag
3651 gtgcagcgcc taacgtgctg gactgggcag acagcggaga tgagtggggt
3701 cattctgcct atggttggca tacaggcccc accactgcgc ttgcccggcc
3751 gcctcaatct gctgaggatt ggtggggtgc gggcacgcgt ccccggggta
3801 gacaacgtac ctcaaggggc cgtggaggtg gtggcaccag atgcccttgc
3851 tgccaacccg gcgggaaacc ctcaataagt ggcccttcag caagcccgct
3901 agtccactca ggcacacgca ccacctgcga gccacagagt gggttatacg
3951 tagtatatga cgtaccctgg ttggaggggg gcggccgggt ctccctgcct
4001 gcgggctgtg ccagttctat atccgtggct cgcgaggtgg tgctgctgtt
4051 gaactacctg tccctgggct gtcgcgggcg tgcggtccag gatagttttg
4101 tcagccccta cttcacgtct gtggtgatag cgcctcccgt gggcgatgtt
4151 tataagccgg gttatcaatc agccaccgta gacgacctca cgataggggt
4201 gccaaacttc tcagcaagcg agctgaagga gtctgagtac ccggggttca
4251 gtgcgcaatg cctccaactc ctcgacaagg ccctatctca gttgatggcc
4301 cgtaggcttg ttaccaccac ccagcgggcg gctataatgg cccgggtatt
4351 ccctgcatat caggacggga gtagacccga tgttcggcaa caaatgcgtg
4401 aatccgtagc cagggcctgg gccctacctt ggactgaggc acctggtgat
4451 ccagattggt tcactaccgg gggatggagt tacgcccgcg aggccaattc
4501 ctctgtggtg ctgcccacgg ccctagcggc acttgctctt cagagcaagg
4551 agttggctaa agtgatgccc aacctggagg cgcaacagaa gcgcactttc
4601 cagggatctc gattagcggg caaattggct ctgctggatg atataagtgc
4651 actgttgctc gccgcccccc gtgacaccga cgtcgcccag gatgacacgg
4701 gggcggacgc acccgccggg ctcagggcta tcacctcaca gtggttagcc
4751 tcagcggtac tctacctagc aggggcgtgt accggggacg cggccccacc
4801 cctgccgtca ctcacacggg cctggttggt tcagcgcaac ccggccctgc
4851 tcgcccaggt ggaccaccta gacggcagca gctcgccgag gccctatgtg
4901 gggatcgggc gggattccct gattagattt cctggcctaa cactgtcacg
4951 ccagacgcat cacttgcatt gggcagaacg gcaacgcgtc tgccccgcgc
5001 tggtggtgcg aatccgctct gtcacagctc gaaggcacct gaaggcgttg
5051 aataggctgt tcccttctac gagccttacg gacagtaaac accagactac
5101 gcacttggca gaagtcgtct ggagttacgt ggtcgggagg gacttgccag
5151 gtagtggcca tcctcacggg gatgggcaga atgcctctaa gtcttgttcc
5201 cccgggggtg gcgggaaatg gtttaaagac gccacggcta gtcagaggct
5251 cagggcagtg aacgccatcc taaaccacat ccccgtgggc accggtcaac
5301 tcctcaccac gggcgctatc atagccgggt tagggctaca gcactgcgac
5351 ctgttcaggg acacctactt gaagagtggt tgcttctggc gtctacccca
5401 tcagatcggg ggtgtcgtca aagcagtggg tacctacatt cggaagtgtg
5451 ctgctgggtt acagggcaat ccactctcgt tggatcaggt gacccagttg
5501 gcctactatg atctcctaac cggcaggtct aagaacgtga ctaactggca
5551 ggaagagata gccaacaggt gtacgcacac atatcatata cgtaggcctt
5601 gtcttgcgtg gcaagtaaac gataaaggcg atctccgcgc cacttgggtg
5651 gaagacagcg ataacctgaa tcccaggttg atgaagcggg atgggcattt
5701 ttacagccgg cttcgatcca tattgatgcg ggtatgtgag cctttagtta
5751 cggccaggaa cacgcgagag cccctggaca agttctatgc ccgccggcac
5801 gagtggatcg cctccggaag ctcagctggg gccagggcaa agatctcgat
5851 ccggaagggc cgcctgggtc ggggcagcca cctcatggct gaggaggtga
5901 aggtgtcaaa aagggcgtgg gctgaagcca cgcccctcag ctccgtgcta
5951 gaggcgctcg cgctgtccca acccagggaa gtggcccacg ccagtgagaa
6001 atacgagaac ggcaaggccc gagccatata cggggtcgag cccatgcact
6051 acgtgataaa tacgtatgca actaaggggt tcgaggagcg cttgcaccta
6101 ctgcccgggc tggagaaggg agccagtggg tcccaggcgt gtgcgttgga
6151 agtgcgtcgt gccctcatta ctcgcgaccc agacctggag tgcaccatgt
6201 tggactatgc tgacttcaac cggcatcaca cccctgaggc gcagtcgctg
6251 ttgtttgacg tctttgcccg cctcgggaaa accaaggggg ctcatcccga
6301 ctgggtggct gctaatctat gggtggcccg ggctaagaaa cagctatggg
6351 ccttgttccc aggagaaact gagcctagaa aagtgaggca agggatgttt
6401 tccggcacca ggtcgaccga tctcatcaac acgctactga acctagccta
6451 ctttgagatg gcgaaggagt ggttggaggt gcagtgtgga ttggcaccca
6501 cccagctata tcacgtccac caaggagacg acgtctgggt gtccaatggc
6551 aacccactgt gggctcgggc tctgtattat tgtttgaaca acatgggatt
6601 cattttccaa gggagcaaac agatgtttgg cccggggagg ggggagtacc
6651 tgcgagtctt gtatagcggg ggtagagccc ggggctactt cgcacggtct
6701 ctagctaact atctgctaag gcccatccag aacgccagct ctgccgaccc
6751 cctatcatgg gcccgcaaca tcagtgacgg cacgtccctg ctggcaaggc
6801 gtgggctcac gccccggatg gctctcgcac tttatatgga tgccgcacga
6851 ttctgggtgc gcgcgagggc tcacccaaaa gataacgccc ccgtgagcat
6901 tccattgcct gtgtgctggc tgcccggtat ccaaggtggg ttgggtagtc
6951 ccccccccac ttgtttgtgg ttgccggaat tagaccagca gttggggttg
7001 gccctaccgg tgatgcggag ttccatcaac gtggagaact ttactgcccc
7051 aactctgatg actgatgatt ggatcgccca tgtcagtaag caggcctatc
7101 gtctaactag gcatcctgag atgccatcgc ccaacctgaa gatggcgggg
7151 ctgcgtgatg acatcatcat ggcgaactac gtcaacgacc ttgctgagta
7201 tttgcctgag aggggttggg cccaatacaa gcgcgattgg gcagaattaa
7251 gaaccagtgt ggggaaacgt cttgcgtcta tgtccagcgg cgccatcata
7301 gccagccgca cagaagagct cggccagcag ctgacctcca tccaggcctg
7351 gattggatat ggccacccac ccagccacat ccccgcttac ccctacttga
7401 ggagccacgt ggacgggctc gacctggggg aggttggctt tgacacgcct
7451 ctcgagaacc ttagagacaa actgtcctcc ataatcacac gcagcgtatt
7501 caagaatgag aacacccttg ctcgtgtgac agggctcaca cgtctcgacg
7551 ccattagcct gatcctggct gaagccgatg tatcagggtt tggcgacgct
7601 gacgttgctg gggtccttgg tccccttctt accagcaaga acgcgcagat
7651 ggtggaccta ctcttgggca gtctgggtga tttggtcccc ggcctgaggg
7701 cttacgtgaa caacgcatac tggcagcacg ttcagtcggt atggatagcc
7751 cagctcacgc ctatggccat tacacaccca ggtatcactc cactacagtg
7801 cgtcagtgct gacaagcgcg gcactgcaca gtggttgtac caaacgatcg
7851 ctgcttccca ggtggcgacc agtgttgtct attaattcgt tcctgcaaca
7901 cgtcctatag ctgcgtatgc aggtgcctaa ggcaccccat acctatagag
7951 c