Sequence of DPV Okra yellow mosaic Mexico virus
Okra yellow mosaic Mexico virus - [Herissantia:Colima 1] coat protein (AV1), replication enhancer protein (AC3), transactivator protein TrAP (AC2), replication protein (AC1), and AC4 (AC4) genes, complete cds.
ACC No: GU990614
Dated: 2010-05-03 | Length: 2615 | CRC: 239841260
ID GU990614; SV 1; linear; genomic DNA; STD; VRL; 2615 BP.
XX
AC GU990614;
XX
DT 03-MAY-2010 (Rel. 104, Created)
DT 03-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE Okra yellow mosaic Mexico virus - [Herissantia:Colima 1] coat protein
DE (AV1), replication enhancer protein (AC3), transactivator protein TrAP
DE (AC2), replication protein (AC1), and AC4 (AC4) genes, complete cds.
XX
KW .
XX
OS Okra yellow mosaic Mexico virus - [Herissantia:Colima 1]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2615
RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A.,
RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.;
RT "New Strains of Okra Yellow Mosaic Mexico Virus Isolated from Weeds";
RL Unpublished.
XX
RN [2]
RP 1-2615
RA Cantu-Iris M., Cardenas-Conejo Y., Mauricio-Castillo J.A.,
RA De la Torre-Almaraz R., Ambriz-Granados S., Arguello-Astorga G.R.;
RT ;
RL Submitted (09-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y
RL Tecnologica, A.C., Camino a la Presa San Jose #2055, San Luis Potosi 78216,
RL Mexico
XX
FH Key Location/Qualifiers
FH
FT source 1. .2615
FT /organism="Okra yellow mosaic Mexico virus -
FT [Herissantia:Colima 1]"
FT /host="Herissantia"
FT /mol_type="genomic DNA"
FT /country="Mexico:Colima"
FT /collection_date="01-Jan-2010"
FT /db_xref="taxon:756895"
FT gene 194. .949
FT /gene="AV1"
FT CDS 194. .949
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="capsid protein; CP; AR1"
FT /protein_id="ADF58306.1"
FT /translation="MPKRDLPWRSIVGTSKVSRNSNYSPRAGSGPRVNKASEWVNRPMY
FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIVN"
FT gene complement(946. .1344)
FT /gene="AC3"
FT CDS complement(946. .1344)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="rep-interacting protein; AC3; AL3"
FT /protein_id="ADF58310.1"
FT /translation="MDSRTGELITVPQAENGVYIWEIENPLYFKTYRVEEPLYTRTRVY
FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFKHLVNMYLDDLGVISINN
FT VIRAVSFATDRSYVNHVLENHSIKFKLY"
FT gene complement(1091. .1480)
FT /gene="AC2"
FT CDS complement(1091. .1480)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein TrAP"
FT /note="transcription factor; regulation of virus late"
FT /protein_id="ADF58309.1"
FT /translation="MQSSSPSYPPSIKLAHRQAKRKSIRRRRIDLECGCSIYFHIGCTG
FT HGFTHRGTHHCTSGREWRLYLGDRKSPIFQDVPSRGTIVYENQSIPRSDTVQPQPEESV
FT ASPQSLPELPSLDDIDDSFWVNLFS"
FT gene complement(1392. .2480)
FT /gene="AC1"
FT CDS complement(1392. .2480)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication protein"
FT /note="RCR-initiator protein"
FT /protein_id="ADF58307.1"
FT /translation="MPQHPKRFQINQKNYFLTYPQCSLTKEEALSQLQTLKTPVNKKFI
FT KICRELHEDGQPHLHVLIQFEGKYRCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSY
FT IDKDGDTIEWGQFQVDGRSARGGQQTVNDTYAKALNASSAEVALIIIREEQPQHFFLQH
FT HNLVANANRIFQKPPEPWVPPFPLSSFANVPDAMQEWADEYFGRGSAARPIRPVSLIVE
FT GDSRTGKTMWARSLGPHNYLSGHLDFNSRVFSNEVEYNVIDDIAPQYLKLKHWKELIGA
FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGDGASYKDFLDKEENRALRNWTIHNAIFITL
FT ISALYQISAQASQTEIDQEEAD"
FT gene complement(2063. .2320)
FT /gene="AC4"
FT CDS complement(2063. .2320)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="ADF58308.1"
FT /translation="MGNLICTSSSNSRGNTGARITDSSIWCPQPGQHISIRTFRELNPA
FT PTSSPTLTKTETPLNGDSFKSTGDLLEEVSRQLTTHMPRR"
XX
SQ Sequence 2615 BP; 643 A; 565 C; 628 G; 779 T; 0 other;
gu990614 Length: 2615 03-MAY-2010 Type: N Check: 9674 ..
1 accggatggc cgcgcgattt ttttcccccc acgcgcgtac gctcctcttt
51 aatttgaatt aaagcgatcc gctttcgttt cgtccaatca tgtaacgcct
101 gacgagctta gatattttaa acaacttggg cgctaagttg ttgggttccg
151 gttataaatt aaagaggctt tggcccacta catttaattc aaaatgccta
201 agcgcgatct cccatggcgc tcgatcgtgg gcacttcaaa ggtgagtcgc
251 aattctaatt attctcctcg tgcaggtagt gggccaagag ttaacaaggc
301 ctctgaatgg gtaaacaggc ccatgtacag gaagcccagg atttatcgga
351 cattgagaac gcccgacgtt ccaagaggtt gtgaagggcc ttgcaaagtc
401 cagtcttatg agcagcgaca tgatatctca catgtcggta aggtaatgtg
451 tatttctgat gtcacacgtg gtaatggtat cacccaccgt gtgggtaagc
501 gtttctgtgt taaatccgtc tatattctcg gtaagatctg gatggatgag
551 aacatcaagc tcaagaacca cacgaacagt gttatgttct ggttggttag
601 ggaccgtaga ccgtatggca cgcctatgga tttcggtcaa gtgttcaaca
651 tgttcgacaa cgagcccagc actgcgacgg tgaagaacga tctacgcgat
701 cgctaccagg tgatgcacaa gttctacggc aaggtgacag gtggacagta
751 tgccagcaac gagcaggcta tagtcaagcg cttctggaag gtcaacaatc
801 atgtggttta caaccatcag gaggctggca agtacgagaa tcacacggag
851 aacgctttgt tattgtacat ggcatgtacc catgcctcta accctgtata
901 tgcaacgctt aagatcagga tctatttcta cgattcgatc gtgaattaat
951 aaagtttgaa ttttattgaa tgattttcca gtacatggtt tacatacgac
1001 ctgtctgttg cgaaactaac agctctgatt acattattaa ttgaaatgac
1051 gcctaaatca tctaaataca tattaactaa atgtttaaac ctagctaaat
1101 aagttgaccc agaagctgtc atcgatgtcg tccagacttg gaagttcagg
1151 taggctttgt ggagatgcaa cgctctcctc aggttgtggt tgaaccgtat
1201 ctgaacgtgg tatactctgg ttctcgtata caatggttcc tctactcggt
1251 acgtcttgaa atatagggga ttttcgatct cccagatata gacgccattc
1301 tctgcctgag gtacagtgat gagttcccct gtgcgtgaat ccatgccctg
1351 tgcaacctat gtggaagtat atggagcacc cgcactccag atcaatccgc
1401 ctcctcctga tcgatttccg tttggcttgc ctgtgcgcta atttgataga
1451 gggcggatat gagggtgatg aagattgcat tatggatggt ccagttcctg
1501 agtgctctgt tttcctcttt gtcgaggaaa tctttatagc tggcaccgtc
1551 acctggattg caaagcacga ttgatgggat acctccttta atttggactg
1601 gcttgccgta cttacagttt gactgccagt ctctttgggc cccgattaat
1651 tctttccagt gctttagctt tagatattgc ggtgcgatgt catcaatgac
1701 gttatactcc acttcatttg agaacactct ggaattgaag tctaggtgtc
1751 cactaaggta gttatgtggg cctaacgaac gagcccacat cgtcttccct
1801 gtcctcgaat caccttctac tatgagactt actggtctaa ttggccgcgc
1851 agcggaaccc ctcccaaaat attcatcggc ccactcttgc atcgcgtctg
1901 gtacgttagc gaacgaggag agtggaaacg gagggaccca tggttccgga
1951 ggcttttgga atattctgtt ggcattagct acgaggttat gatgttgcaa
2001 gaagaaatgt tgcggttgtt cttctctgat tattatcaga gctacctctg
2051 cagatgatgc attcaacgcc ttggcatatg tgtcgttaac tgtctgctga
2101 cctcctctag cagatctccc gtcgacttga aactgtcccc attcaatggt
2151 gtctccgtct ttgtcaatgt aggacttgac gtcggagctg gatttagctc
2201 cctgaatgtt cggatggaaa tgtgctgacc tggttgggga caccagatcg
2251 aagaatctgt tattcgtgca cctgtatttc ccctcgaatt ggatgaggac
2301 gtgcagatga ggttgcccat cttcgtgtaa ttctctgcag atcttgatga
2351 atttcttgtt tactggtgtt tttagggttt gtaattggga aagtgcttcc
2401 tctttagtaa gagagcattg tgggtatgtg aggaaataat ttttctgatt
2451 tatttgaaaa cgttttggat gttgtggcat ttttgtaaat aagagggtgt
2501 gtaccagttg agctctctca aaacttggtg aatgaattgg tacacaggta
2551 cacaatatat agtagaactc tcattaacgg atttgcaaca cgtggcggcc
2601 atccgatata atatt