Sequence of DPV Sweet potato chlorotic stunt virus

Sweet potato chlorotic stunt virus P22 gene, segment RNA 1, genomic RNA, strain busia

ACC No: HE575407

Dated: 2012-01-10 | Length: 576 | CRC: -239381490

                
ID   HE575407; SV 1; linear; genomic RNA; STD; VRL; 576 BP.
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AC   HE575407;
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DT   10-JAN-2012 (Rel. 111, Created)
DT   10-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE   Sweet potato chlorotic stunt virus P22 gene, segment RNA 1, genomic RNA,
DE   strain busia
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KW   .
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OS   Sweet potato chlorotic stunt virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
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RN   [1]
RP   1-576
RA   Otto B.;
RT   ;
RL   Submitted (19-JUL-2011) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Chatham Maritime,
RL   Kent, ME7 4BT, UNITED KINGDOM.
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RN   [2]
RA   Wasswa P., Otto B., Gibson R., Maruthi M.;
RT   "'The occurrence and characteristics of a mild strain of Sweet potato
RT   chlorotic stunt virus'";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .576
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /segment="RNA 1"
FT                   /strain="busia"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Busia"
FT                   /PCR_primers="fwd_name: P22-F, fwd_seq:
FT                   ctttgaacgatgagttctgg, rev_name: P22-R, rev_seq:
FT                   ctaccctaatatctttatcg"
FT                   /db_xref="taxon:81931"
FT   CDS             1. .576
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="P22"
FT                   /product="P22 protein"
FT                   /function="RNAi silencing"
FT                   /protein_id="CCC58177.1"
FT                   /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT                   SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN
FT                   KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT                   HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
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SQ   Sequence 576 BP; 154 A; 92 C; 110 G; 220 T; 0 other;

he575407 Length: 576  10-JAN-2012  Type: N  Check: 855  ..

       1  atgagttctg gagcaattta ctctgaactt aatcgttttc ttaagtatct
      51  tagggagtta gattttagta atttttgttt tagtgatttt ttgtttcgtt
     101  tttcttccct aaaatcacta atcgatgagt atagtagtca ttggttagta
     151  aatacgaatg aattagtctg gtatagaaca atctgtgagc aacgattgca
     201  tcctcatctt ttcgatgcaa acaggttgtt aacacggata aatgtttcag
     251  atttgaagca tgacttgata atgattcgtg atcatttttc gagtattgat
     301  gattttctaa acaagtatcc ggctatacca attcttgtct cattcaccaa
     351  aaatattagt gcgtttttag aagataatga gtgggaatcc gttattcatc
     401  atacggactc actcaatcgt cttgttttcc gagagtcgtg gtcagacggt
     451  tatggttacg ttaaccacca tcgtctttca gcgtcgtcgc atgattttca
     501  acatatgaag ttatgtgata tttttcgttt gtccaaggat aagttgaaca
     551  gtggtgtgtt cactttcctt ctttaa