Sequence of DPV Gremmeniella mitovirus
Gremmeniella mitovirus viral mRNA for RNA dependent RNA polymerase (RdRp gene), strain GaMRV-S53, isolate Gremmeniella abietina-P3-7
ACC No: HE586988
Dated: 2012-08-13 | Length: 2575 | CRC: 1987794875
ID HE586988; SV 2; linear; mRNA; STD; VRL; 2575 BP.
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AC HE586988;
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DT 20-SEP-2011 (Rel. 110, Created)
DT 13-AUG-2012 (Rel. 113, Last updated, Version 3)
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DE Gremmeniella mitovirus viral mRNA for RNA dependent RNA polymerase (RdRp
DE gene), strain GaMRV-S53, isolate Gremmeniella abietina-P3-7
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KW .
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OS Gremmeniella mitovirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
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RN [1]
RC revised by [3]
RA Botella L.;
RT ;
RL Submitted (06-SEP-2011) to the INSDC.
RL Resources, AV. Madrid 44 Edif E. Campus, Dept. Plant Production and Forest,
RL Universty of Valladolid, SPAIN.
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RN [2]
RA Botella L., Tuomivirta T.T., Vervuurt S., Diez J.J., Hantula J.;
RT "Occurrence of two different species of mitoviruses in the European race of
RT Gremmeniella abietina var. abietina, both hosted by the genetically unique
RT Spanish population";
RL Fungal Biol 116(8):872-882(2012).
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RN [3]
RP 1-2575
RA Botella L.;
RT ;
RL Submitted (18-APR-2012) to the INSDC.
RL Resources, AV. Madrid 44 Edif E. Campus, Dept. Plant Production and Forest,
RL Universty of Valladolid, SPAIN.
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FH Key Location/Qualifiers
FH
FT source 1. .2575
FT /organism="Gremmeniella mitovirus"
FT /host="Gremmeniella abietina"
FT /strain="GaMRV-S53"
FT /isolate="Gremmeniella abietina-P3-7"
FT /mol_type="mRNA"
FT /country="Spain"
FT /isolation_source="Pinus halepensis"
FT /PCR_primers="fwd_name: Mito-SV5str, fwd_seq:
FT gayccrgaatgtaarrtkag, rev_name: Mito-SV3str, rev_seq:
FT catctyttagcaaattcrtawgtat"
FT /db_xref="taxon:1084723"
FT CDS 256. .2481
FT /codon_start=1
FT /transl_table=4
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /function="catalyzes the replication of RNA from an RNA
FT template"
FT /db_xref="GOA:G3CCB3"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR008686"
FT /db_xref="UniProtKB/TrEMBL:G3CCB3"
FT /protein_id="CCD32685.2"
FT /translation="MNKNLFQIVIKLFVMIFLNTDVKLFVSLYFKCLTKHLKHHGVVST
FT VKVFKQIRFHVTRYLCGSPLRINSMMIGIDKDGWPKMIDFLKPLANGTRSDKQFLLSIL
FT FITRSFVEKDKTKLVPDWSTITQPRTTQKEYIIPSGFIKDWVLNNHLGTYKSEFDDSNH
FT FVSVKSSPTGPSTLTALWGLWNHSYESFNWLFKITSLSGVNYLTEIMNWTWLRDLGNKN
FT NNKWSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQD
FT PLNDWEDNEHSFWSIDLTAATDRFPISLQRRLLLYIYSDPELANSWQNLLVHREYARYG
FT LNPIKYSVGQPMGAYSSWPAFTLSHHLVVHWCAHLCGINKFKDYIILGDDIVIHNDNIA
FT KKYVEIMGKLGVGLSDSKTHVSKDTYEFAKRWIHKGQEISPLPITGIVNNITNPYIVLM
FT NLYDFFKIKRNQYNFSGDLLTMLLKLYQGLKIYKRDKSKRFYYLSLNRFKNLDIFLFAL
FT NNSFGYSTYDHKRSFLISRNYSKDLPGPKIMQDLISYVISTGLSDLTVESVNKSLKFVD
FT TLIDNKSLLHIEDPNDLSNLPLFKGFQAYISNLRKTVDEWNNESISLIEASRGLVQMDI
FT LPIIKGSNRKILELQTIGKIYLSGIQGINNTEFEIFGSSQMIPSNKNLGIQEGSSLNSF
FT SSLSSSIDINLVFIQNELNVIAKKNWMPPATEESVADSYAAFAAMFN"
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SQ Sequence 2575 BP; 913 A; 399 C; 407 G; 855 T; 1 other;
he586988 Length: 2575 13-AUG-2012 Type: N Check: 4582 ..
1 ggtgtttgcc ccttaattaa gtgtaaactg ggctaatcac ccggccaagt
51 tttattttct tggtcccagt tagcaatact atgagagtat tctagatttc
101 ttggagtgtc cctttgggtt ttatttctga aggctggaaa ctccaaccgt
151 tggaaatacc ctacaaaaga gctaagttat accattgtag ataactataa
201 tcgctcttgg gccgcaagtc ggctatgcgg tacgcccgtt taaaacttaa
251 ttattatgaa caaaaattta tttcaaatag taattaaact attcgtaatg
301 atatttttga acacagatgt taagctcttt gtatctcttt attttaaatg
351 tttaactaaa catttaaaac accacggtgt agtgagtaca gtaaaagtat
401 ttaaacaaat aagattccat gttactcgtt atctctgtgg atcaccattg
451 agaattaact cgatgatgat agggatagat aaagatggtt gaccaaaaat
501 gatcgatttc ttaaaacctc ttgctaatgg aacaagatct gataaacaat
551 ttcttttatc aattctgttt attacaagaa gttttgttga aaaagacaag
601 actaaattag ttccagattg aagtacaata actcaacccc gaacaactca
651 gaaggaatat atcattcctt cgggktttat taaggattga gtattaaaca
701 accatcttgg tacttataaa agtgaatttg atgattcaaa tcattttgtt
751 tcagtgaaga gtagtccaac aggaccttca acactgacag cattatgagg
801 actatgaaat catagttatg aatcatttaa ttgacttttt aagattacta
851 gtttgtctgg tgttaattat cttactgaaa tcatgaattg gacttggtta
901 agggatctag gaaataaaaa taataataaa tgatctaaac aatttttagg
951 atcattatca ttaatttatg acccagaatg taaggtaaga attgtagcta
1001 tgttagatta tacaacacag ctatttctcc gacctataca taatgacttg
1051 tttaaacttc ttaagaagtt accacaagac agaaccttta ctcaagatcc
1101 attaaatgat tgagaagata atgagcactc attttgatca atcgacctta
1151 cggcagcaac tgatagattt ccaataagtt tacagcgaag gttattacta
1201 tatatatata gtgatcctga gctagcaaac tcttggcaga atctattagt
1251 acatagagaa tatgctcgct atgggctaaa tccaataaaa tattctgttg
1301 gacagcctat gggagcatat tcatcctgac ctgctttcac attatctcat
1351 catcttgtag ttcactgatg tgcacattta tgtggcatca ataaatttaa
1401 agattacata attcttggtg atgatatcgt tattcataac gataatatcg
1451 ctaagaaata tgttgaaata atgggaaagt taggagtggg tctatctgat
1501 agtaaaacac atgtatcaaa agatacatac gaatttgcta aaagatgaat
1551 ccataaagga caagaaatat cgccattacc tattacagga attgttaata
1601 atataacaaa tccctatata gttttaatga acttatatga tttctttaaa
1651 atcaaaagaa atcagtataa cttctcaggt gatttactaa ctatgttatt
1701 gaaattgtac caaggtctca agatctataa aagagataaa agtaaaagat
1751 tttattactt atctcttaat agatttaaaa accttgatat atttctattt
1801 gcgctgaata attcttttgg atattcaaca tatgatcaca aaagatcatt
1851 tttgatatcc agaaattaca gtaaggattt gccaggacca aaaataatgc
1901 aagatttaat atcttacgta attagtactg gtttatctga tcttactgtg
1951 gaaagtgtaa ataaatcact aaagttcgtc gatacattga tagacaataa
2001 aagtctatta catatcgaag atccaaatga tttatcaaac cttccattat
2051 tcaaaggttt tcaagcttat atctctaatc ttcgaaagac tgttgacgag
2101 tgaaataatg aatcaatttc acttatcgaa gcctctagag gattagtcca
2151 aatggatata cttccaatta ttaaaggttc taataggaaa attttagaac
2201 ttcaaactat tggaaaaata taccttagtg gaatacaagg aattaataat
2251 actgaatttg aaatttttgg ttcttctcaa atgattccct caaacaaaaa
2301 tttgggaatt caagaaggaa gttccttaaa ttcattttca tcattatctt
2351 ccagtataga tataaatttg gtttttatcc agaacgagtt aaatgttata
2401 gctaagaaga actgaatgcc tcctgcaact gaagaatcag ttgcggattc
2451 atatgcagcc tttgcagcta tgttcaatta atatcattac cggatacagt
2501 tgcaaatcta gattactcaa aaattatatt gagcctagac tccaactggg
2551 gttttacact tatgtgtaaa acacc