Sequence of DPV Cassava mosaic Madagascar virus
Cassava mosaic Madagascar virus segment DNA-A complete sequence, isolate MG:Tol:06
ACC No: HE617299
Dated: 2012-03-11 | Length: 2769 | CRC: -1490362544
ID HE617299; SV 1; circular; genomic DNA; STD; VRL; 2769 BP.
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AC HE617299;
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DT 11-MAR-2012 (Rel. 112, Created)
DT 11-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE Cassava mosaic Madagascar virus segment DNA-A complete sequence, isolate
DE MG:Tol:06
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KW .
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OS Cassava mosaic Madagascar virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2769
RA Harimalala M.A.;
RT ;
RL Submitted (09-DEC-2011) to the INSDC.
RL Harimalala M.A., UMR PVBMT, CIRAD, 97410, 97410, REUNION.
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RN [2]
RA Harimalala M.A., Lefeuvre P., Hoareau M., Villemot J., Tiendrebeogo F.,
RA Ranomenjanahary S., Andrianjaka A., Reynaud B., Lett J.M.;
RT "A novel cassava-infecting begomovirus from Madagascar: Cassava mosaic
RT Madagascar virus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2769
FT /organism="Cassava mosaic Madagascar virus"
FT /segment="DNA-A"
FT /host="Manihot esculenta"
FT /isolate="MG:Tol:06"
FT /mol_type="genomic DNA"
FT /country="Madagascar:Toliary"
FT /collected_by="Sahondramalala Ranomenjanahary"
FT /collection_date="2006"
FT /db_xref="taxon:1125764"
FT CDS 116. .499
FT /transl_table=1
FT /gene="AV2"
FT /product="AV2 protein (MP)"
FT /protein_id="CCF12086.1"
FT /translation="MLVQQVVLHFKMWDPLLNEFPDSVHGFRCMLAIKYLQAVEVTYES
FT NTLGRDLIRDLISVIRARDYVEASRRYNNCHSRLEGASEAELRQPIQQPCCCPHCPRHK
FT QVQIMEVQTHVSEAQDVQDVQKP"
FT CDS 309. .1076
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein (CP)"
FT /protein_id="CCF12087.1"
FT /translation="MSKRPADIIIATPASKVRRKLNFDSPYSSRAVVPIVPGTSKFKSW
FT KFRPMYRKPRMYRMFKSPDVPRGCEGPCKVQSYEQRDDVKHTGTVRCVSDVTRGPGITH
FT RVGKRFCIKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQLWLGDFLGLIIMWCIITRRQLSMR
FT IIQRMRYCCIWHVRMPLIQCMLRLKYASIFMMQ"
FT CDS complement(1081. .>1485)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC3"
FT /product="replication enhancer protein (REn)"
FT /protein_id="CCF12088.1"
FT /translation="MDSRTGALITAPQAQNGVFTWEINNPLYFTIPRHDSRPSHLNHDI
FT ITIQIRFNHNIRKELGIHKCFLNFQVWTTLHPQTGHFLSVFKRQVLKYLDNVGVISINT
FT VIRAVDHVLYNVLVNTLQVMESHEIKFNLY"
FT CDS complement(1226. .>1633)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC2"
FT /product="transcription activator protein (TrAP)"
FT /protein_id="CCF12089.1"
FT /translation="MQPSSPSASHCSQVPIKVLHRIAKTRRIRRRRIDLSCGCSYYLHI
FT DCINHGFTHRGTHHCSSSAEWRFYLGDKQSPLFHDTQTRLETVPPEPRHHHHPNTLQPQ
FT HPEGIGDSQMFSELPGLDDLTPSDWSFLKRI"
FT CDS complement(<1543. .>2621)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC1"
FT /product="replication associated protein (Rep)"
FT /protein_id="CCF12090.1"
FT /translation="MPPPKRFKIQAKNYFLTYPKCSLSKHDALSQILNIPTPTNKKYIK
FT VCRELHEDGQPHLHMLIQFEGKFSCTNKRLFDLVSPTTSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTTEWGEFQIDARSARGGCQNANDACAEALNSRSKAAALLIIKEKLPKEFIFQYH
FT NLSSNLDRIFQEPPAPYVSPFLSSSFDQVPDDLEVWVSENIMHPAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVFTNDAWYNIIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNASLKAWALKNATFVTLSEPL
FT FTGSHQGPTPHSQDETHQT"
FT CDS complement(2207. .>2464)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CCF12091.1"
FT /translation="MGNLISTCLFNSKANSHAQISDYSTWYPQQRQPISIQTFKEPNPA
FT PTSSPTSTKMGIQLSGANSRSTQDLLEAAAKMLMTHVPKP"
XX
SQ Sequence 2769 BP; 737 A; 518 C; 686 G; 828 T; 0 other;
he617299 Length: 2769 11-MAR-2012 Type: N Check: 2969 ..
1 accggatggc cgcgcccgaa aaagtaagtg ggccccacaa tggtccccac
51 gcactaattt atgtcgacca atcacattgt gtctgggaag actacataat
101 tataatggtc tttatatgct tgtccaacaa gtagttttgc atttcaaaat
151 gtgggatcca ttgttaaatg aatttcctga ctcggttcat ggatttcgtt
201 gtatgctagc tataaaatat ttgcaggctg tggaggtaac ctacgagtcc
251 aatactttgg gccgcgattt aattcgggat ctcatttctg ttattagggc
301 tcgtgactat gtcgaagcgt cccgccgata taataattgc cactcccgcc
351 tcgaaggtgc gtcggaagct gaacttcgac agcccataca gcagccgtgc
401 tgttgtcccc attgtcccag gcacaagcaa gttcaaatca tggaagttca
451 gacccatgta tcggaagccc aggatgtaca ggatgttcaa aagccctgat
501 gttcctcgtg gctgtgaagg cccatgtaag gttcaatcat atgaacagcg
551 agatgacgtc aagcatactg gcactgttcg ttgtgtgagt gatgtcacgc
601 gtggtccggg aattacgcat agagtgggta aaaggttttg tatcaagtct
651 atatatgtgt taggtaagat atggatggat gaaaatatca agaagcagaa
701 ccatactaac caggtcatgt tcttcttagt ccgtgacaga aggccctatg
751 gcactagccc catggacttt ggacaggttt ttaatatgtt tgataatgag
801 cccagtacag caactgtgaa gaacgatctt agggataggt atcaagttat
851 gcggaagttt catgccaccg ttgttggggg tccttctggg atgaaggagc
901 agctttggtt aggagatttt ttaggattaa taatcatgtg gtgtataatc
951 accaggaggc agctaagtat gagaatcata cagagaatgc gttattgttg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcta cgcttaaaat
1051 acgcatctat ttttatgatg cagtaacaaa ttaatacaaa ttaaatttta
1101 tttcgtggga ctccataact tggagtgtgt ttacaagtac attgtacaat
1151 acgtgatcaa cagcgcgaat tacagtgttt attgaaataa cgcctacatt
1201 atctaaatac ttaagaactt gacgcttaaa tacgcttaag aaatgaccag
1251 tctgagggtg taaggtcgtc cagacctgga agttcagaaa acatttgtga
1301 atccccaatt ccttccggat gttgtggttg aagcgtattt ggatggtgat
1351 gatgtcgtgg ttcaggtggg acggtctcga gtcgtgtctg ggtatcgtga
1401 aataaagggg attgtttatc tcccaggtaa aaacgccatt ctgcgcttga
1451 ggagcagtga tgagtgcccc tgtgcgtgaa tccatgattg atgcagtcga
1501 tgtggagata atatgaacag ccgcagctta ggtcgatacg tctacgtctg
1551 atgcgtctcg tcttggctat gcggtgtagg accttgatgg gaacctgtga
1601 acaatggctc gctgagggtg acgaaggttg catttttcag tgcccacgct
1651 ttgagagatg cattcttttc ttcatcgaga tattctttat atgaagaagt
1701 cggccccgga ttgcagagga agatagtggg aattccgcct ttaatttgaa
1751 ttggctttcc gtattttgtg ttgctttgcc agtctcgttg tgcacccatg
1801 aactctttaa agtgctttag atagtgcgga tcgacatcat caataatgtt
1851 gtaccatgca tcattagtga agactttggg actgaggtcg agatgaccac
1901 ataaataatt atgtggtccc aatgatctgg cccacattgt cttccctgta
1951 cgactatcac cctcaataac aatactattc ggtctccaag gccgcgcagc
2001 gggatgcata atgttttctg acacccagac ctcaaggtcg tcaggaactt
2051 ggtcgaatga agaagacaga aatggagaaa catagggagc tggtggctct
2101 tgaaaaatcc tatctaaatt actacttaag ttatgatatt gaaaaataaa
2151 ttctttgggg agtttctcct taataattag aagtgcagct gccttcgaac
2201 gtgagtttaa ggcttcggca catgcgtcat tagcattttg gcagccgcct
2251 ctagcagatc ttgcgtcgat ctggaattcg ccccactcag ttgtatcccc
2301 atctttgtcg atgtaggact tgacgtcgga gctggatttg gctccttgaa
2351 tgtttggatg gaaatgggtt gacgttgttg gggataccag gtcgaataat
2401 cgcttatttg tgcatgagaa tttgccttcg aattgaataa gcatgtggag
2451 atgaggttgc ccatcttcgt gaagttctcg gcacactttg atgtatttct
2501 tattagttgg agttgggatg tttaagattt gggataatgc gtcgtgttta
2551 gatagagagc atttgggata tgtgaggaaa tagtttttgg cttgtatttt
2601 aaaacgcttg ggaggaggca tttatgcgag agcaattgga gacaccttgg
2651 ttgatgtctc tactgaattg gagacaatat atagtgtctc caaatggcat
2701 tatggtaatt agttaaagct atgttcaaaa ttcaaaaatt ggaccaaaag
2751 cggccatccg tataatatt