Sequence of DPV Clitocybe odora virus
Clitocybe odora virus complete genome, isolate C-Holm
ACC No: HE717021
Dated: 2012-06-28 | Length: 3765 | CRC: -857910714
ID HE717021; SV 1; linear; genomic RNA; STD; VRL; 3765 BP.
XX
AC HE717021;
XX
DT 14-MAR-2012 (Rel. 112, Created)
DT 28-JUN-2012 (Rel. 113, Last updated, Version 2)
XX
DE Clitocybe odora virus complete genome, isolate C-Holm
XX
KW complete genome.
XX
OS Clitocybe odora virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
XX
RN [1]
RP 1-3765
RA Willingmann P.;
RT ;
RL Submitted (06-MAR-2012) to the INSDC.
RL Biozentrum Klein-Flottbeck und, Botanischer Garten, Phytomedizin,
RL Ohnhorststrasse 18, Hamburg, Hamburg 22609, GERMANY.
XX
RN [2]
RA Heinze C.;
RT "A novel mycovirus from Clitocybe odora";
RL Arch. Virol. 0:0-0(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3765
FT /organism="Clitocybe odora virus"
FT /host="Clitocybe odora"
FT /isolate="C-Holm"
FT /mol_type="genomic RNA"
FT /isolation_source="host fruiting body"
FT /collection_date="07-Sep-2010"
FT /db_xref="taxon:1162083"
FT CDS join(305. .3037,3041. .3718)
FT /transl_table=4
FT /ribosomal_slippage
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /note="putative CP domain detected"
FT /db_xref="UniProtKB/TrEMBL:H8XBW0"
FT /protein_id="CCG47524.1"
FT /translation="MIHTLLWIHIMVSFDHLLIRKPGPSHQTLLQVESNTKNMKNISQL
FT LDQKFRFRSFSLGVLSAKAIRNNSLSMVGMVLRLIPTMQGKLTPAIAKDTKSILSQFSR
FT IAKCQGIVGLVKYLKACSVLTQQSISGFKVDNFSPRVSRTNSGIPRILPVHCRRMIRQG
FT HLVYMRLSLTIFSLFRVMRYPGKMKISTITAPYSGTEQMIRIVTKDIPRFVRLFCPSAG
FT RSLIGRFSYVVINKSSPMALRGIASTHPTSLIRAALAFTPKQVESLELLARASHPESQV
FT VITPEGIKEPPTPLPGVMVFINRIRKSVIPSLFGLGINTPSHTGKLGLKEEAAGKVRVF
FT AMVDPWSQMILRPFHLGLFKILRRIRMDGTFNQLKPLERAWGFKSLYSMDLSSATDRLP
FT MRIQVPLIQQLFKLTNAEAEAWRSLLVDRPYYCPPLNTSVMYSVGQPMGALSSWAMLAM
FT THHLIVQVAAWRSGFDKKKLFRAYAVLGDDIVIFDKKVAKYYHRVLTGLGVECNLAKSI
FT MSHRGIGLEFAKKTFFQGFNVSPSPLTEVLAALKDPIALLQYGKIYGLKFVDLLTVAGF
FT GFRVKSRAHLPYWRQPNKKVRYLLICQMMQAGNLKELFSRSMGSKVGSPLLASTLSSYV
FT SGTLNDLFNQYFKNIRVASALDANTLSEATTYPRLYYDLFWLIYHPFVFNYKILNTRGM
FT ALTQTLHHSFRPVKEGVDEAIFDLVERLKSLFTIESMVSSLSLDITKMRRGGDEVPVRV
FT PAPKALRIQNAWKVVFEAFVKKTDPITEKIDQVDVLERSLFPLALISRVFFKSVPKSTI
FT GKLRTMRIARTPFPADLVKSFGYRTLFWFLSGEVIAAFITTSLLYYIGAISIVILDHLW
FT LHNGDLHSLLPLLLVPFGPLIELVKVSFFAALSYFGLAPATIPVSVKILVVTFIGHLGY
FT ALTALLHHWDWIVAVYSDFHWNHGGAESIWQMIQFSFGTYYELVLVPLAGFVSSIIKSA
FT YSLSWSYIKESVFWADICWGQNAISYWLWDSFTFLYGYQDYTVTDFRWNVEDQYLPDIP
FT EDPETPQEDDASDTDTITGHEWDGPSHYDWTNQDDGFLIIEPVPTEPWYVRLSQYYVSN
FT AFLISPIIGLIVVPTVKWLLLPASTLIVG"
XX
SQ Sequence 3765 BP; 998 A; 801 C; 811 G; 1155 T; 0 other;
he717021 Length: 3765 28-JUN-2012 Type: N Check: 2042 ..
1 ctgtaccttc acaggttcag ttaagacgaa atctcgtctt tctctcctca
51 attggagttc tatctttagt tcttcttctg agagggtccc ccagtcttgg
101 gtaattaggt agttacatcc taattacttc ggccgggagt taggtcaagt
151 cttttgattt gatattgcct cctaaaccga gtgacacccg ccatccttcc
201 aaaggtagcc gcagccccca cctaggggaa actgtaggat agtctctaga
251 gggaagtgac gaatggtcgt cggcctggtt tagtaacata caaatcagag
301 tcccatgata cataccctgt tatggattca tattatggtc tcttttgatc
351 acttattaat ccggaaaccg ggtccgagtc accaaactct tcttcaagtt
401 gaatctaata ctaagaatat gaaaaacata tctcaattat tggaccagaa
451 gtttcgtttc cgaagcttct cacttggagt tctatctgct aaggctatta
501 gaaataatag cttaagtatg gttggaatgg tcttacgact tattccgacc
551 atgcaaggga aactgactcc ggccattgca aaagatacca aaagtatcct
601 ttctcaattt tctcgaattg ctaagtgcca agggatcgtt gggttagtga
651 aatacttaaa ggcctgttct gtgttaacac agcagtccat ctctggtttt
701 aaagttgata acttttcacc cagggtaagt agaactaact ccgggatccc
751 tcggattctt cctgttcatt gtagacgtat gatacgtcag gggcatctcg
801 tttatatgag actctctctg acaatcttct ccttgttccg tgtaatgcgg
851 tatccaggga aaatgaaaat atctacaata acagctccgt actcaggtac
901 agaacagatg attcgtattg taactaagga tattcctcgg ttcgtacgac
951 tcttctgtcc gtcggctgga agatctttaa tcggacgttt ttcctacgtc
1001 gtgattaata aatcttctcc gatggccctg agaggaattg cgtctactca
1051 tcctacttca ttgattcgag ctgctttggc ttttacgcca aaacaggtcg
1101 agtcacttga gcttctagcg agagctagcc atcctgaatc tcaggtggtt
1151 atcactccag aaggtattaa ggaacctcct actcccttac caggagttat
1201 ggtgttcatt aacagaatta ggaagagcgt aattccttcc ttgtttggtt
1251 tagggattaa taccccttct catacaggga aactcggctt gaaggaagaa
1301 gctgcgggaa aggtgcgagt tttcgctatg gtagatcctt ggtctcagat
1351 gatcttgcgg ccattccatt tgggactttt taaaatttta agaagaatcc
1401 gaatggatgg tacgtttaat caacttaaac cattggaaag agcatggggt
1451 tttaaatccc tatactctat ggatctatcc tctgccaccg accgtctacc
1501 aatgagaatc caagtacctc taattcagca gctgtttaaa ttaacaaacg
1551 ctgaagctga ggcctggaga tctctactag tagaccgacc ctattattgt
1601 cctccactga acacatcggt gatgtattcg gtgggtcaac caatgggggc
1651 gttatcgtcg tgggcgatgt tagcaatgac tcatcacctc atcgtgcaag
1701 tagcagcatg gcgatctgga tttgataaga agaaactgtt ccgagcctac
1751 gccgttctcg gtgatgatat agtgatcttc gataagaagg ttgcaaaata
1801 ttatcacagg gtattgactg ggcttggggt agagtgtaat ctagctaaat
1851 ctatcatgtc ccatagaggg attggattag aattcgcaaa gaaaacattc
1901 ttccaaggtt tcaacgtatc accctcacct cttacagagg tgttagccgc
1951 tctgaaagac cctatcgcac tcctacagta tggaaaaatt tacggactta
2001 agttcgtaga ccttctaact gtagcaggtt tcgggttccg cgtgaaatct
2051 cgtgctcatc tgccttactg gagacaacct aacaaaaaag ttagatatct
2101 tctgatatgt cagatgatgc aagcgggaaa tctaaaggaa ctcttttccc
2151 gatccatggg atccaaggtt ggttcgccac ttctggcttc caccttgtca
2201 tcctatgtat ctggaactct taacgaccta ttcaaccaat atttcaaaaa
2251 tattagggtt gcctcggcgt tagatgcgaa tactctttct gaggctacta
2301 cttatcctcg gttatattat gatctgttct ggttgatata ccatcctttt
2351 gtatttaatt ataaaatatt aaacactcga ggaatggcgt taacccaaac
2401 tcttcatcat agtttccgac cggttaagga gggggtggat gaagccattt
2451 ttgatcttgt ggagagacta aagtctctat tcacaatcga aagcatggta
2501 tcgtccctat ccctggatat tactaaaatg cgacgtggcg gtgacgaggt
2551 tccggtaaga gtaccggccc ccaaagcgct acgtatccaa aacgcatgga
2601 aggtagtatt cgaggccttc gtaaagaaga cagatcccat caccgagaaa
2651 attgatcaag tagacgtttt agaacgttca ctctttcctt tagctctgat
2701 tagtagggtc ttcttcaagt cggtcccaaa gtcaactatt ggtaagttga
2751 gaacaatgag aattgctcga acaccgtttc cagcagactt ggtaaagtct
2801 tttggttata gaaccctatt ttggtttcta agtggtgaag taattgcggc
2851 gtttattacg acgtcattac tgtactatat cggagcaatt tccatagtga
2901 tcctagatca tctttggtta cacaatggtg atttacactc gctcttgcca
2951 ctattattgg ttccatttgg tccactaata gagttggtca aggtgagttt
3001 ctttgctgcc ttatcctatt tcggattggc acctgcttga actattcctg
3051 tctcagtgaa gattctagtt gtgaccttta tcggtcacct agggtatgca
3101 ttaactgcat tacttcatca ttgggattgg atagtagctg tgtattctga
3151 ttttcattgg aatcacggag gagcagagtc tatatggcag atgattcaat
3201 ttagctttgg gacatactat gaattagtat tagttccact agctggattt
3251 gtttcatcaa tcataaagtc agcgtactca ctcagctggt cctacattaa
3301 agaatctgtc ttttgggcag atatatgttg gggtcaaaat gctatctcct
3351 attggttatg ggattccttt actttccttt acgggtatca ggactacaca
3401 gtcactgatt tccgatggaa tgtagaggac cagtaccttc cggatattcc
3451 ggaagatcct gaaacccccc aagaggatga cgcatccgac accgacacta
3501 taaccggaca tgaatgggat ggtcctagtc attatgactg gactaaccag
3551 gatgacggtt tcttaatcat agaaccagta ccaaccgaac catggtatgt
3601 tcgattaagt cagtattacg taagtaatgc attcttgatt tcacctatta
3651 ttggtttgat cgtagttccc actgtgaagt ggttactact tcctgcttct
3701 actttgatag tagggtagga ggcttggacg atctaatacg ttaataagca
3751 atggtcgcag tcgga