Sequence of DPV Shamonda virus
Shamonda virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate Ib An 5550
ACC No: HE795105
Dated: 2012-08-20 | Length: 6863 | CRC: -986460668
ID HE795105; SV 1; linear; genomic RNA; STD; VRL; 6863 BP.
XX
AC HE795105;
XX
DT 20-AUG-2012 (Rel. 113, Created)
DT 20-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Shamonda virus RdRp gene for RNA-dependent RNA polymerase, segment L,
DE genomic RNA, isolate Ib An 5550
XX
KW .
XX
OS Shamonda virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Orthobunyavirus.
XX
RN [1]
RP 1-6863
RA Hoeper D.;
RT ;
RL Submitted (19-MAR-2012) to the INSDC.
RL Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health,
RL Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems
RL 17493, GERMANY.
XX
RN [2]
RX DOI; org/10.3201/eid1810.120835.
RA Goller K., Hoeper D., Schirrmeier H., Mettenleiter T.C., Beer M.;
RT "Schmallenberg virus as possible ancestor of Shamonda virus";
RL Emerg. Infect. Dis. 0:0-0(2012).
XX
CC related sequences HE795106, HE795107.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6863
FT /organism="Shamonda virus"
FT /segment="L"
FT /isolate="Ib An 5550"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:159150"
FT CDS 20. .6784
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="CCG93491.1"
FT /translation="METYKINIFRDRINQCRSAEEAKDIVADLLMARHDYFGREVCYYL
FT DIEFRQDVPAYDILLEFLPAGTAFNIRNCTPDNFIIHNGKLYVIDYKVSTDHAYGQKTY
FT EKYTQIFGDALSELPFDFEVVIIRADPLRDTIHVNSNQFLEIFGPLNINLDFTWFFNLR
FT SLIYEKYKDDDRFLEIVNQGEFTMTGPWIDEDTPELYSHPVFLEFYDSLDEMAKLTFHE
FT SMTFDATRGEKWNQNLQKVINRYGNDYNVFVKDAAAGIFRCEGNYPKPNHDEITIGWNQ
FT MVQRVSTERNLTQDVSKQKPSIHFIWGQPDEASNATTPKLIKIAKALQNISGESTYIGA
FT FRALGMLMDFSENTALYEAHTSKLKSMARQTSKRIDTKLEPIKIGTATIYWEQQFKLDT
FT EIMNTKDKSHLLKDFLGIGGHVQFSKKTIDDLDTDKPTILDFNKKEVIDFCKFQYENVK
FT KILSEDNNLERIGCYLEEYGANIASCSKDTWNQINRIGKSNYWACIKDFSVLMKNMLAV
FT SQYNRHNTFRVVCCANNNLFGFVMPSSDIKAKRSTLVYFLAVLHSTPQNVMHHGALHAT
FT FKTGSKYLSISKGIRLDKERCQRIVSSPGLFMLTTLMFTGDNPTLNLTDVMNFTFHTSL
FT SITKAMLSLTEPSRYMIMNSLAISSHVRDYIAEKFGPYTKTSFSVVMANLIKRGCYMAY
FT NQRDKVDMRNICLTDYEITQKGVRDNRDLSSIWFEGYVSLKEYINQIYLPFYFNSKGLH
FT EKHHVMIDLAKTILDIERDQRLNIPGIWSTTPRKQTANLNITIYAVAKNLIMDTARHNY
FT IRSRIENTNNLNRSICTISTFTSSKSCIKVGDFEKEKSSAIKKAADCMSKEIKKYTIAN
FT PEFVDEELMNATIRHSRYEDLKKAIPNYIDIMSTKVFDSLYQKITRKEINDKPTVYHIL
FT SAMKNHTDFKFTFFNKGQKTAKDREIFVGEFEAKMCLYLVERISKERCKLNPDEMISEP
FT GDSKLKKLEELAESEIRFTAATMKQIKERYLAEMGEASHMITYKPHSVKIEINADMSKW
FT SAQDVLFKYFWLFALDPALYLQEKERILYFLCNYMQKKLVLPDEMLCSILDQRIKHEDD
FT IIYEMTNGLSQNWVNIKRNWLQGNLNYTSSYLHSCSMNVYKDILKRAATLLEGEVLVNS
FT MVHSDDNHTSIVMIQDKLDDDIIIEFSAKLFEKICLTFGNQANMKKTYITNFIKEFVSL
FT FNIYGEPFSVYGRFILTSVGDCAFLGPYEDVASRLSATQTAIKHGAPPSLAWTAIALTQ
FT WITHSTYNMLPGQINDPTSVLPSHDRFELPIELCGLINSELPTIAIAGLEADNLSYLVR
FT LSKRMSPIHLCREPIQHQYENIHTWDISRLTQCDIFRLKLLRYMTLDSTMSSDDGMGET
FT SEMRSRSLLTPRKFTTASSLSRLHSYADYQKTIQDQQKVEELFEYFIANPQLLVTKGET
FT CEEFCMSVLFRYNSRKFKESLSIQNPAQLFIEQVLFANKPMIDYTSIHDRLFGIQDDPN
FT INDTTCIIGKKTFVETYQQIKADVEKFTLDVEDIKTIYSFCIMNDPILVACANNLLISI
FT QGVEMQRLGMTCCYMPEIKSLKVIYHSPALVLRAYVTDNYEQKGMEPDEMRRDIYHLEE
FT FIEKTKLRANMQGRIANNEVKLMKRDLKFEVQELTKFYQICYEYVKSTEHKIKIFILPK
FT KAYTPIDFCSLVTGNLISDNKWMVVHYLKQITVPAKKAQIATSIDLEIQIAYECFRLIT
FT HFADMFLNDDSKKAYINAIISTYTYKDVQVSNLYKKIKSSRLRSKIIPLLYHLGDLQQV
FT DVDRFDAEKAEEQITWNNWQTSREFTTGPIDLSIKGYGRSIRIIGEDNKLTAAEMQLSR
FT VRSDIVSRHGQALLNKPHGLKLEKMEPVTDLNPKLWYIAYQLREKKRYHYGVFSTSYIE
FT EHNSRIEASRIRKTNKWIPVCPIAISKQSSDGKPNLAKIPMLNIGEIKFTKLQIAVDDH
FT AMIRKAPFSKMVFFDGPPIQSGGIDIGKLMKNQNILNLRLDNIQSITLLDLCRIFSCRG
FT SKVDQDAFEFLSDEPLDEDVIDELDSSPALVVSYTKKSTKSNSFKNVIVRALIRECDIF
FT EDIMDITDDGFTSDSNLEVLENLTWILNMLATNQWSTELLACIHMCLYRNEMDHIYHNF
FT QVPEIFVDNPISLNVKWDEVVMFLNVLRDRDYKIEPWVSILDHSLTKAIEYAYKKMDEE
FT RKQKSTGINKFLKGKKMGGRSKFDFQ"
XX
SQ Sequence 6863 BP; 2451 A; 1133 C; 1304 G; 1975 T; 0 other;
he795105 Length: 6863 20-AUG-2012 Type: N Check: 5736 ..
1 gcccctaatt acaatcacta tggagacata caagatcaat atttttagag
51 acaggatcaa ccagtgtcga agtgctgaag aagccaaaga cattgttgct
101 gatcttctta tggctagaca tgactatttt ggtagagagg tatgttatta
151 cctggatatc gagttccggc aggacgttcc agcttatgac atacttcttg
201 aatttctgcc agccggcact gcttttaaca tccgcaattg tacgccagac
251 aattttatca ttcataatgg caaactttat gtcattgatt acaaggtatc
301 aactgatcat gcatatggcc aaaaaactta tgaaaaatac acccaaatct
351 ttggagacgc attgtcagaa ttgccgtttg attttgaggt tgtgatcatc
401 cgtgctgacc ctttgcgaga tactattcat gtcaattcaa atcaattctt
451 ggaaatattt gggccgctca acataaacct tgattttact tggttcttca
501 acttacgatc cctaatatat gaaaaatata aggatgatga cagattcctt
551 gaaattgtga atcaaggtga attcacaatg actggaccct ggatcgatga
601 ggataccccg gagctttatt cgcaccctgt ctttttagag ttctatgatt
651 ctttagatga gatggcaaag ctgacattcc atgaatctat gacatttgat
701 gcaactcgcg gtgaaaagtg gaatcaaaac ctgcaaaaag ttataaatag
751 atatggcaat gattataacg tttttgtgaa agacgccgct gcaggaatct
801 ttagatgtga agggaattat cctaaaccaa atcatgatga gattacaatc
851 ggttggaatc aaatggttca gagagtgagt actgagcgaa atctgactca
901 ggatgtcagc aagcaaaagc catctatcca tttcatatgg ggccaacctg
951 atgaagcatc aaatgcaaca acaccaaaac taatcaaaat tgcaaaggca
1001 cttcaaaata tctctggtga gtctacatat ataggcgcat tcagagcact
1051 gggcatgctt atggactttt ctgagaacac agccttatat gaagcacata
1101 ctagcaagtt gaaaagtatg gcaagacaga catcaaagag aattgatact
1151 aaactggagc caataaaaat aggcactgca acaatttatt gggagcaaca
1201 atttaaattg gatactgaaa taatgaatac aaaagataaa tcacatttgc
1251 taaaggactt ccttggtata gggggtcatg tgcaattctc aaaaaagacc
1301 attgacgatt tagatactga caaacctact attttggatt tcaacaaaaa
1351 ggaagtcatt gatttctgca aattccagta tgaaaatgta aagaaaatat
1401 tatctgaaga taataatcta gagcgtatag ggtgttattt agaagaatat
1451 ggtgcaaaca ttgcatcatg ctcaaaggat acatggaatc agataaatcg
1501 aatagggaag tcaaattatt gggcttgtat taaagatttt tcagtcttga
1551 tgaaaaatat gctagcagtc tctcaatata ataggcacaa tacttttcgc
1601 gtagtgtgtt gtgcgaacaa taatctgttt gggtttgtga tgccttcttc
1651 tgatatcaaa gcaaaacgat ccacacttgt ttatttctta gctgtattgc
1701 attctacccc tcagaatgtg atgcatcatg gtgcattgca tgcaacattt
1751 aaaacaggtt caaaatacct tagtatctct aagggaatac gattggataa
1801 agaaagatgt cagcgtatag ttagttcacc aggacttttt atgttgacta
1851 cattaatgtt tacaggagac aatccaacac tcaatttgac tgatgtcatg
1901 aattttacat tccacacttc cctgtctata actaaggcta tgctgtcact
1951 tacagaacca tcaaggtata tgataatgaa ttcattagcc atatccagcc
2001 atgttagaga ttacatagca gaaaaatttg gcccttatac aaagaccagt
2051 ttctctgtgg taatggcaaa cttgattaaa agaggatgtt atatggcata
2101 taatcaaaga gataaagtgg acatgagaaa tatctgccta actgattatg
2151 aaataaccca aaaaggtgtg agggataaca gagatctatc atcgatctgg
2201 tttgaaggct atgtatcatt aaaggaatat attaaccaga tatatctgcc
2251 gttttacttt aattcaaaag gtttgcatga aaagcatcat gttatgatag
2301 atctggctaa gacaatttta gatatagaaa gggatcagag gttaaatatc
2351 ccaggaatat ggtctacaac acctagaaag cagactgcaa atttaaatat
2401 aactatttat gcagttgcaa aaaatctaat aatggacact gctagacata
2451 attatatcag gtcacggata gaaaacacaa acaacttaaa tagatcgata
2501 tgcactattt ctacattcac cagctccaaa tcatgtatta aggtaggaga
2551 ctttgagaaa gaaaaaagct cagcaataaa aaaggctgca gattgtatgt
2601 caaaagaaat aaagaagtat accattgcaa acccagaatt tgttgatgaa
2651 gaattaatga atgcaactat aaggcattca cgctatgaag acttaaaaaa
2701 agcaatccca aattatattg atattatgtc aaccaaagta tttgactctc
2751 tataccagaa aataacaagg aaagagataa atgataaacc cactgtgtat
2801 cacatactct ctgctatgaa gaatcacaca gattttaagt tcacattctt
2851 taataaaggc caaaaaacag caaaggatag ggaaatattc gtaggcgaat
2901 ttgaggcaaa aatgtgcttg tatctagtgg aaaggatatc taaagaacgc
2951 tgcaagttga acccagatga gatgatcagc gaaccaggcg attctaaatt
3001 gaaaaaattg gaagagcttg cagaatctga aatacgattc acagcagcaa
3051 ctatgaaaca aatcaaagaa cgttacttag cagaaatggg agaagcaagc
3101 catatgatca catataaacc acattctgtt aagattgaaa tcaatgcaga
3151 catgtcaaaa tggagtgctc aggatgtttt attcaaatat ttctggttgt
3201 ttgcattgga ccctgcactt tatctgcaag aaaaagaaag gatattatac
3251 ttcctgtgca attatatgca aaaaaagcta gttttgcctg atgaaatgct
3301 ctgtagtatc cttgaccagc gtattaaaca tgaggatgat ataatatatg
3351 aaatgaccaa tggcttatca caaaattggg tcaatatcaa acgaaactgg
3401 ctgcaaggga atctcaatta tacaagtagc tacctgcatt catgttctat
3451 gaatgtttac aaggatattc taaagagggc agccacttta ctagaaggag
3501 aggtcttagt caattctatg gtccattctg atgacaatca tacttcaata
3551 gtgatgatcc aggacaaatt agatgatgac attattattg aattttctgc
3601 aaagctcttt gaaaaaatat gcctaacttt cggaaaccag gcaaatatga
3651 agaagacata cataacaaat ttcataaaag aatttgtttc actcttcaat
3701 atttacggcg agccattttc tgtttatggt cgctttattt tgacatctgt
3751 tggcgattgt gcttttcttg gaccatatga agatgttgcc agcaggttat
3801 ctgcaacaca gacagcaatc aaacatggag caccgccatc gcttgcatgg
3851 actgccattg cattaactca atggataaca catagtacat ataacatgct
3901 cccaggccaa atcaatgatc ctacttcagt tttacctagt catgataggt
3951 ttgagctgcc tatagaatta tgtggcttga taaattcaga attgcccact
4001 atagctatag caggtttgga agcagataat ctaagttatt tagttaggtt
4051 atcgaaaaga atgtctccta tacatctttg ccgtgaacca atccagcatc
4101 aatatgagaa tatacataca tgggatatta gcaggctgac gcaatgtgat
4151 atattcagac ttaagctttt aagatacatg acattagact caaccatgtc
4201 atctgatgac gggatgggcg aaactagcga gatgagatct aggtctcttt
4251 taacaccaag gaaattcact actgctagct cattgtctag attgcattca
4301 tatgctgatt accagaaaac aatacaagat caacagaaag ttgaagaatt
4351 atttgaatat tttatagcca atcctcaact attggtcaca aaaggtgaga
4401 cttgtgaaga gttttgtatg tctgtattgt tcaggtacaa cagtcgcaag
4451 ttcaaagaat cattgtctat tcagaatcca gctcagctct tcatagagca
4501 agtgttgttt gcaaataaac ctatgataga ctatacaagc attcatgata
4551 ggttatttgg tatacaagat gacccaaata taaatgatac tacatgtatt
4601 attggcaaga agacttttgt tgaaacatat cagcaaataa aagctgatgt
4651 agaaaagttt acacttgatg tagaagacat aaaaacaatt tacagcttct
4701 gtataatgaa tgaccctata ttggttgctt gtgcaaacaa cttgttaatt
4751 tcaatacagg gtgtagagat gcagcgattg ggtatgacat gctgttatat
4801 gccagagatt aaaagtctta aagtaattta tcatagtcct gctcttgtac
4851 tgcgtgctta tgtaacagat aactatgagc aaaaagggat ggagccagat
4901 gaaatgcgca gagacatata tcatttagaa gaatttatag aaaagactaa
4951 attaagggca aatatgcaag ggagaattgc aaacaatgag gttaaattaa
5001 tgaagcgaga tttgaaattt gaagtgcagg aactaactaa attctatcag
5051 atctgttatg aatatgtgaa atcgacagaa cacaaaatta aaatatttat
5101 tcttccaaaa aaagcttaca ctcccattga tttctgctca ttggtgacag
5151 gcaatctaat atcagacaat aaatggatgg ttgttcatta tttaaaacaa
5201 ataactgtcc cagcaaagaa agcacaaata gccacatcta tagatctgga
5251 gatacaaata gcctatgaat gtttcaggtt aattacacac tttgctgata
5301 tgtttctgaa tgatgattct aaaaaggctt atattaatgc gatcattagc
5351 acatacacat acaaggacgt tcaagtatcc aatctctaca agaaaatcaa
5401 aagttcaagg ttacgctcaa aaatcatacc attattatat cacttgggcg
5451 acttgcaaca agtggatgtt gacagatttg atgcagaaaa agcagaagag
5501 cagatcacgt ggaataactg gcaaacatca cgagaattta ctactggccc
5551 gattgatcta tcaatcaaag gttatggacg gtcaataagg atcataggtg
5601 aagacaacaa gcttacagct gcagaaatgc agttgtcaag agtgaggagt
5651 gacattgtat caaggcatgg acaagccttg ttgaacaaac cccacgggct
5701 gaaattagag aaaatggaac cagtgactga tctaaaccca aaattatggt
5751 atattgcata ccaattacgc gagaaaaagc ggtatcacta tggggtcttt
5801 agtacatctt acatagaaga gcacaactca aggatagagg cgtctcggat
5851 acgtaagacc aataaatgga taccagtttg ccctattgct atatcaaagc
5901 aatcgtctga tgggaagcct aatcttgcga agatccctat gttgaatatt
5951 ggggagataa aatttacaaa attgcagatt gcagtagatg accatgcaat
6001 gattaggaag gccccattca gtaagatggt tttctttgat ggcccaccta
6051 tacaaagtgg tggcattgat attggaaagc ttatgaagaa tcaaaatatt
6101 ctcaatctaa gattagataa tatacagagt ataacgttgt tagacttgtg
6151 ccgtatattt tcatgtcgag gatctaaagt ggatcaagat gcatttgaat
6201 ttttatctga tgaaccttta gacgaagatg ttattgatga attagacagc
6251 tcacctgcat tagtagtatc ttacacaaag aaatcaacca agtccaatag
6301 ttttaaaaat gttatagtta gagcattgat aagagaatgc gatatatttg
6351 aagatataat ggatataaca gacgatggat ttacatctga tagtaatcta
6401 gaagtactag aaaacttaac atggattttg aatatgctgg caacaaatca
6451 atggtctaca gaattattag catgtataca catgtgctta tatcgtaatg
6501 agatggacca tatctatcat aattttcaag ttccagaaat atttgtggac
6551 aatccaattt cattaaatgt aaaatgggat gaagtagtca tgtttttaaa
6601 tgtactgcga gacagggatt ataaaattga accatgggta tctatactag
6651 atcattcctt aactaaggct atagaatatg cttacaagaa gatggatgag
6701 gagaggaagc aaaaatcaac aggcattaat aaattcttaa agggtaaaaa
6751 gatgggtggc agatcaaaat ttgatttcca atagcttgac tctaaatatt
6801 gcataatctt tgccccaaat ctgtattata taaataattt taaagtagtt
6851 tcatgtaatt agg