Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus Uganda segment DNA-A, isolate Central African Republic-Ippy-CF36-2007 complete sequence
ACC No: HE814063
Dated: 2012-07-08 | Length: 2798 | CRC: -111643697
ID HE814063; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC HE814063; XX DT 08-JUL-2012 (Rel. 113, Created) DT 08-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE East African cassava mosaic virus Uganda segment DNA-A, isolate Central DE African Republic-Ippy-CF36-2007 complete sequence XX KW complete viral segment. XX OS East African cassava mosaic virus Uganda OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2798 RA Lett J.M.; RT ; RL Submitted (07-MAY-2012) to the INSDC. RL Lett J.M., Pole de Protection des Plantes, CIRAD-BIOS-UMR PVBMT, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Zinga I., Harimalala M., De Bruyn A., Hoareau M., Mandakombo N., RA Semballa S., Reynaud B., Lefeuvre P., Lett J.M.; RT "East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava RT mosaic virus (ACMV) reported for the first time in Central African Republic RT and Chad"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .2798 FT /organism="East African cassava mosaic virus Uganda" FT /segment="DNA-A" FT /strain="Uganda" FT /isolate="Central African Republic-Ippy-CF36-2007" FT /mol_type="genomic DNA" FT /country="Central African Republic:Center" FT /lat_lon="6.16 N 21.15 E" FT /isolation_source="Manihot esculenta" FT /collection_date="Aug-2007" FT /db_xref="taxon:1188991" FT CDS 172. .528 FT /gene="AV2 protein" FT /product="AV2" FT /protein_id="CCH63365.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332. .1105 FT /gene="AV1" FT /product="coat protein (CP)" FT /protein_id="CCH63366.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102. .1506) FT /gene="AC3" FT /product="replication enhancer protein" FT /protein_id="CCH63367.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFKYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247. .1654) FT /gene="AC2" FT /product="transcriptional activator protein" FT /protein_id="CCH63368.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1563. .2642) FT /gene="AC1" FT /product="replication associated protein (Rep)" FT /protein_id="CCH63369.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVYENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGHPT" FT CDS complement(2252. .2485) FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="CCH63370.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNPR FT PMSKLTLKRAGNFLTLDFSKSMPEVQGGKASI" XX SQ Sequence 2798 BP; 733 A; 551 C; 735 G; 779 T; 0 other; he814063 Length: 2798 08-JUL-2012 Type: N Check: 1551 .. 1 accggatggc cgcgcccgaa aaagcagggg gaccccacaa tgaccgcgcc 51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt 101 cacgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc 151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc 201 cgaaaccgtt cacggtttcc gttctatgct ggctgttaaa tacctgttac 251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag 351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc 401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag 451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca 501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag 551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa 651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat 701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct 751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat 801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg 851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga 951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac 1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc 1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa 1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg 1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1201 aatggaaata acgcctatca tatccaaata cttgagcact tgatatttaa 1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg 1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt 1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct 1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta 1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg 1551 aggtctaccc gcctacgtcg gatggccctg gtcttcgctg tgcggtgttg 1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg 1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag 1701 aaacgcttta taagaggatg ttggtcctgg attgcagagg aagatagtgg 1751 gaatgccgcc tttaatttga attggcttcc cgtatttagt attgctttgc 1801 cagtctcttt gggcccccat gaattctttg aagtgtttga gatagtgggg 1851 gtcgacgtca tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg 1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga 1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat 2001 cggtctccat ggccgcgcag cgggactgca tatattttcg tatacccata 2051 cctctatgtc ttctgggact tgtgtaaaag atgatgataa gaacggacta 2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat 2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt 2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga 2251 gctaaatgct ggccttcccc ccttgcactt ctggcatcga cttggaaaag 2301 tccagcgtca agaaattccc cgcccttttc aatgtaagct ttgacatcgg 2351 acgaggattt agctccctga atgttcggat ggaaatgtgt tgatcgggat 2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc 2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc 2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat 2551 tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa 2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg 2651 tcgtttcgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact 2751 tccattcaaa atttgaattc cgaatatggc ggccatccga ttaatatt