Sequence of DPV East African cassava mosaic virus

East African cassava mosaic virus Uganda segment DNA-A, isolate Central African Republic-Ippy-CF36-2007 complete sequence

ACC No: HE814063

Dated: 2012-07-08 | Length: 2798 | CRC: -111643697

                
ID   HE814063; SV 1; circular; genomic DNA; STD; VRL; 2798 BP.
XX
AC   HE814063;
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DT   08-JUL-2012 (Rel. 113, Created)
DT   08-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   East African cassava mosaic virus Uganda segment DNA-A, isolate Central
DE   African Republic-Ippy-CF36-2007 complete sequence
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KW   complete viral segment.
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OS   East African cassava mosaic virus Uganda
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-2798
RA   Lett J.M.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Lett J.M., Pole de Protection des Plantes, CIRAD-BIOS-UMR PVBMT, 7 Chemin
RL   de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE.
XX
RN   [2]
RA   Zinga I., Harimalala M., De Bruyn A., Hoareau M., Mandakombo N.,
RA   Semballa S., Reynaud B., Lefeuvre P., Lett J.M.;
RT   "East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava
RT   mosaic virus (ACMV) reported for the first time in Central African Republic
RT   and Chad";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2798
FT                   /organism="East African cassava mosaic virus Uganda"
FT                   /segment="DNA-A"
FT                   /strain="Uganda"
FT                   /isolate="Central African Republic-Ippy-CF36-2007"
FT                   /mol_type="genomic DNA"
FT                   /country="Central African Republic:Center"
FT                   /lat_lon="6.16 N 21.15 E"
FT                   /isolation_source="Manihot esculenta"
FT                   /collection_date="Aug-2007"
FT                   /db_xref="taxon:1188991"
FT   CDS             172. .528
FT                   /gene="AV2 protein"
FT                   /product="AV2"
FT                   /protein_id="CCH63365.1"
FT                   /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT                   IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT                   ETQDVQNVSKPRCP"
FT   CDS             332. .1105
FT                   /gene="AV1"
FT                   /product="coat protein (CP)"
FT                   /protein_id="CCH63366.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT                   NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT                   VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT                   PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT   CDS             complement(1102. .1506)
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="CCH63367.1"
FT                   /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT                   ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFKYQVLKYLDMIGVISINT
FT                   VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT   CDS             complement(1247. .1654)
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /protein_id="CCH63368.1"
FT                   /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI
FT                   DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT                   PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT   CDS             complement(1563. .2642)
FT                   /gene="AC1"
FT                   /product="replication associated protein (Rep)"
FT                   /protein_id="CCH63369.1"
FT                   /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT                   VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT                   EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT                   NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVYENICSPAARPWRPISIVLEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEEKNQSLKAWALKNATFITLHEPL
FT                   FSSAHQSPTPHSEDQGHPT"
FT   CDS             complement(2252. .2485)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="CCH63370.1"
FT                   /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNPR
FT                   PMSKLTLKRAGNFLTLDFSKSMPEVQGGKASI"
XX
SQ   Sequence 2798 BP; 733 A; 551 C; 735 G; 779 T; 0 other;

he814063 Length: 2798  08-JUL-2012  Type: N  Check: 1551  ..

       1  accggatggc cgcgcccgaa aaagcagggg gaccccacaa tgaccgcgcc
      51  cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
     101  cacgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
     151  gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
     201  cgaaaccgtt cacggtttcc gttctatgct ggctgttaaa tacctgttac
     251  atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
     301  gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
     351  atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
     401  gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
     451  aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
     501  gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
     551  gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
     601  ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
     651  agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
     701  gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
     751  tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
     801  ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
     851  agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
     901  tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
     951  atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
    1001  acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
    1051  tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
    1101  attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
    1151  tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
    1201  aatggaaata acgcctatca tatccaaata cttgagcact tgatatttaa
    1251  atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
    1301  aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
    1351  gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
    1401  tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
    1451  aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
    1501  atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
    1551  aggtctaccc gcctacgtcg gatggccctg gtcttcgctg tgcggtgttg
    1601  gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
    1651  gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
    1701  aaacgcttta taagaggatg ttggtcctgg attgcagagg aagatagtgg
    1751  gaatgccgcc tttaatttga attggcttcc cgtatttagt attgctttgc
    1801  cagtctcttt gggcccccat gaattctttg aagtgtttga gatagtgggg
    1851  gtcgacgtca tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg
    1901  gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
    1951  gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
    2001  cggtctccat ggccgcgcag cgggactgca tatattttcg tatacccata
    2051  cctctatgtc ttctgggact tgtgtaaaag atgatgataa gaacggacta
    2101  acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
    2151  gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
    2201  gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga
    2251  gctaaatgct ggccttcccc ccttgcactt ctggcatcga cttggaaaag
    2301  tccagcgtca agaaattccc cgcccttttc aatgtaagct ttgacatcgg
    2351  acgaggattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
    2401  ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
    2451  gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
    2501  tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
    2551  tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
    2601  ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
    2651  tcgtttcgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
    2701  gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
    2751  tccattcaaa atttgaattc cgaatatggc ggccatccga ttaatatt