Sequence of DPV Citrus tristeza virus

Citrus tristeza virus partial CP gene for coat protein, isolate A7-Bosnia

ACC No: HF947343

Dated: 2013-06-16 | Length: 672 | CRC: -1463242923

                
ID   HF947343; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   HF947343;
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DT   16-JUN-2013 (Rel. 117, Created)
DT   16-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Citrus tristeza virus partial CP gene for coat protein, isolate A7-Bosnia
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-672
RA   Afechtal M.;
RT   ;
RL   Submitted (15-APR-2013) to the INSDC.
RL   Plant protection, National Institute of Agricultural Research INRA, B.P.
RL   257, 14 rue Abou Temmam, Kenitra, Morocco, 14000, MOROCCO.
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RN   [2]
RA   Delic D., Lolic B., Afechtal M., Djelouah K., Karacic A.;
RT   "First report of Citrus tristeza virus in Bosnia and Herzegovina";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="A7-Bosnia"
FT                   /mol_type="genomic RNA"
FT                   /country="Bosnia and Herzegovina"
FT                   /db_xref="taxon:12162"
FT   CDS             <1. .>671
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CCW28895.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSINLHIDPTLIAMNDV
FT                   RQLGTHQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT                   YTRGGVEVDLPDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 199 A; 126 C; 165 G; 182 T; 0 other;

hf947343 Length: 672  16-JUN-2013  Type: N  Check: 3822  ..

       1  atggacgacg aaacaaagaa attgaagaac aaaaataagg agacgaaaga
      51  aggcgatgac gttgttgccg ctgagtcttc tttcggttcc ataaacttac
     101  acatcgatcc aactctgata gcgatgaatg acgtgcgtca gttgggtacc
     151  catcagaacg ctgctttaaa tagagactta tttcttactt tgaaagggaa
     201  gcatcctaac ttacctgaca aagataagga ctttcacata gctatgatgt
     251  tgtatcgttt agcagttaaa agttcatcat tacaaagcga tgacgatact
     301  acgggtataa cgtacactcg ggggggtgtt gaagtggatt tgcctgacaa
     351  actttggact gacgtcgtgt ttaactccaa gggtattggc aaccgtacta
     401  acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt
     451  tgtagacaga atcgcaactt aagttatggc ggacgtccgt tagatgcagg
     501  gattccagcc gggtatcatt acctgtgtgc agatttcttg accggagctg
     551  gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
     601  ttgaagaagc gaggagctga tgaagttgta gttaccaatg tcaggcagct
     651  tgggaaattc aacacacgtt ga