Sequence of DPV Santeuil nodavirus
Santeuil nodavirus isolate JU1264 segment RNA1, complete sequence.
ACC No: HM030972
Dated: 2011-02-06 | Length: 3628 | CRC: -1389328721
ID HM030972; SV 1; linear; genomic RNA; STD; VRL; 3628 BP.
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AC HM030972;
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DT 06-FEB-2011 (Rel. 107, Created)
DT 06-FEB-2011 (Rel. 107, Last updated, Version 1)
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DE Santeuil nodavirus isolate JU1264 segment RNA1, complete sequence.
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KW .
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OS Santeuil nodavirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae;
OC unclassified Nodaviridae.
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RN [1]
RP 1-3628
RA Felix M.-A., Ashe A., Piffaretti J., Wu G., Nuez I., Belicard T., Jiang Y.,
RA Zhao G., Franz C.J., Goldstein L.D., Sanroman M., Miska E.A., Wang D.;
RT "Natural and Experimental Infection of Caenorhabditis Nematodes by Novel
RT Viruses Related to Nodaviruses";
RL PLoS Biol. 9(1):e1000586-e1000586(2011).
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RN [2]
RP 1-3628
RA Wang D.;
RT ;
RL Submitted (23-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Molecular Microbiology, Washington University in St. Louis, 4940 Parkview
RL Place, St. Louis, MO 63110, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3628
FT /organism="Santeuil nodavirus"
FT /segment="RNA1"
FT /host="Caenorhabditis briggsae"
FT /isolate="JU1264"
FT /mol_type="genomic RNA"
FT /country="France"
FT /collection_date="2007"
FT /db_xref="taxon:977913"
FT CDS 609. .3557
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /note="protein A"
FT /protein_id="ADW54431.1"
FT /translation="MESSPITPSRKGFLAKTQDAATTFIRHSVPIPVLGMIRALEVLTG
FT SKVAAVLLTPTSLIAAVNQLYRWIAYLAAKRTGVKIPKVFSFGIHAFSLYLVYKFARIV
FT YHWVFNKDLAENAIRQRDNWTAISLWAGVQIHGEVKARMFRPLLPANHTTHRSWTTVED
FT TIVLTTNDQTTHHPNLIAWNGEIVLTQDICFPLHVSCSRRPGDTLFIDYVFKRSSNIAP
FT HSITGTLFSTDLMSNNQYSCRSEWHGGALNVYLAPARSYTTFSTTRKNWETIMHQFTVN
FT GAKAQNYTVMNLLQTLIPTSQQADRLFAGGLIASYWNRCADMDVIEERVRHRGEIQFVN
FT DVRDDKFAPWKLTGRTVGPHFVTTPNTMPYKGHQNDLSAIEFRLDAKRNPHETLSQNVH
FT AKMDEFVKLLNPQKIHRWTHRQVIENQTKPMQIRRNEEAAKVIGWLHALKCKVKAMLKV
FT EAINQSGATRNISTVGAEFNLEYGSFMLPAAEWLKQNTKWYTAGKPPKEIAIRVRELAT
FT QARTRNAEPYLCCADVSKMDAGKHVEITAYLLSVIYFSMFPDDIDTLANLRTTEATAEA
FT HTNTGMKYKIGGSQLSGSASTTIDNTVTNAFISYYAHRVEGRCPTEAYAALGIYVGDDS
FT VSHNTTESIEQAGRDLGYTLTSEIIKEGEPVPFLSRYFYQPWEQGLSSFQDPMRLLSKL
FT HLSIAPMYIPDATAFLNKMRGLTELDPAIFLYKALYDKMQDLVGIVGTSNSDDTPWYTR
FT TFGAGESWPTDHEAQIRWEAIVGIAPNTYATWLLKIHTYEQLMTIAPPKADNTAKPKLQ
FT HSLDPTVPGVEAPPSTDPAPDHATIGVSQSSAIDLMNAIEDKVEFAIANVASRMSRGLP
FT PAPRSLLAPQTDRQPGENQDCLFGPNEKKKKKKSGPPTAKHRAAPAVTPTAPPAEEEPT
FT TAPSAPAPAPIPIEDLMAMADAGNLRRPRRSTVPNPNASHPRGRPPPPSGVT"
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SQ Sequence 3628 BP; 1011 A; 1128 C; 826 G; 663 T; 0 other;
hm030972 Length: 3628 06-FEB-2011 Type: N Check: 7125 ..
1 tattatcata ctgacaatgg taatatgcga gagcgatagc aagcactaga
51 aacgagttac gcaaccacag acagcaagcc cggaaggcgc gcagagactg
101 aacacctctg tgtggctgaa ggctccccac taaccctgga gagaagtggc
151 agaaccacag cctagtacta gccgcaaggc ttaagaaact aggtgtagct
201 gagtcctttc ccttaaacaa ggattggacc acttgtagga tccgtgtatt
251 caaacgatct ggcagcacta tggctcggac aggtacaacc aataaacaca
301 agcgttttga gaaaccggcg tgattgtacc gcagttttaa aggagcttca
351 aaccctccca gccgaaagat caaacgaagt cgtagttgaa ctaacgtagt
401 aggggagcgg cgtttgagga tgttcacggg tcagtaacgt gaatagcttc
451 attcgtgacg tgctcaaacc accgtatagg ttcgccttag tcattagcag
501 ggatggctag gttcagctgc gcatgcacaa accacaacaa taaactaaac
551 tttattcgcg tatttgtgca ttcccgttgc ccacccacac tcctaacaaa
601 tttcaagtat ggagtcgtca ccaatcaccc cctctcgaaa aggcttccta
651 gctaaaacgc aggacgccgc cacaaccttc atccgccact cagtcccaat
701 ccccgtactc ggtatgattc gggcccttga agtgcttact ggaagcaaag
751 tagccgcagt gctcttgacc cccacttctc taatcgcagc cgtcaaccag
801 ctttaccgtt ggattgctta tttggccgct aagaggacag gagtcaagat
851 cccaaaagtg ttttcgttcg gaatccacgc attctcgttg tatctggtct
901 acaagttcgc gagaatcgtg taccattggg tcttcaataa ggacctcgcc
951 gaaaacgcca tccgtcaacg tgacaactgg acagccatct ccttgtgggc
1001 tggagtccag atccacggag aagtgaaagc tcggatgttt agaccactgc
1051 tacccgccaa ccacacaacg caccgctcat ggaccacagt agaagacaca
1101 atcgtactca cgaccaacga ccagaccaca caccacccca acttgatcgc
1151 ctggaacgga gagatcgtcc tcactcagga catctgcttc ccgctccatg
1201 taagttgttc cagaaggcca ggagacacgt tattcatcga ttacgtgttc
1251 aaacgaagtt ccaacatcgc cccacactcg atcaccggta ccctcttctc
1301 caccgatctg atgtccaaca accagtactc ttgccgtagt gaatggcacg
1351 gaggcgctct aaacgtatac ctcgcccccg ccagatccta caccaccttc
1401 tccacgacaa ggaagaactg ggagaccatc atgcaccaat tcaccgttaa
1451 cggcgcgaaa gcccagaact acacggtgat gaatctgctc cagacgctaa
1501 tccccacctc acagcaggcc gaccgcctgt tcgccggagg gttgatcgca
1551 tcctactgga acagatgtgc cgacatggac gtcatcgagg agagagtccg
1601 ccaccgcggt gagatccaat tcgtgaacga tgtcagagat gacaagttcg
1651 ccccatggaa actcaccggc agaaccgtcg gaccacactt cgtcaccacc
1701 cctaacacca tgccatacaa aggacaccag aatgacttat cggccatcga
1751 gtttagactc gacgccaaac ggaaccccca tgagactctc agccaaaacg
1801 tccacgccaa gatggatgag ttcgtaaaac tactcaatcc acagaagatc
1851 cacagatgga cacacagaca ggtcattgag aaccagacga aaccaatgca
1901 aatccgcaga aatgaggagg ctgcaaaggt catcggttgg ctccatgccc
1951 tgaagtgcaa agtcaaggct atgctgaaag ttgaagccat caaccaatcc
2001 ggagccacca gaaacatcag cacagtcggg gccgaattca accttgaata
2051 cggttccttc atgcttcccg ctgctgaatg gctcaagcag aacacgaaat
2101 ggtacacagc tggtaaaccc ccaaaggaga tagccatccg agtaagggaa
2151 ctagccaccc aggcaagaac ccgaaacgct gaaccatatc tgtgctgcgc
2201 ggatgtctcc aagatggatg ccggaaaaca cgtcgagata actgcctacc
2251 tactctcagt catatacttc tccatgttcc cagatgatat cgacaccctc
2301 gccaacctca ggacaaccga ggccacagcc gaggcacaca cgaacactgg
2351 aatgaagtac aaaatcggag gcagtcaact gtctggaagc gccagcacca
2401 ccatcgacaa cacagtcacc aacgctttca tctcctacta cgctcaccgc
2451 gtcgaaggaa gatgtccgac agaggcttat gccgctctcg gaatctacgt
2501 tggtgatgac tcggtcagcc acaacaccac ggaatccatc gaacaagccg
2551 ggcgtgacct cggttacacc ctcacctccg agatcatcaa ggaaggcgag
2601 ccagttccgt tcctgtcccg gtacttctac caaccatggg aacagggact
2651 cagctcattc caagacccga tgcgactcct atccaaactc cacctctcca
2701 tagcaccaat gtacatcccg gacgccaccg cattcctcaa caagatgcga
2751 ggactcaccg agttggaccc cgccatcttc ctctacaagg ctctgtatga
2801 taaaatgcag gaccttgttg ggattgtcgg gacctccaac tcagacgaca
2851 caccgtggta caccaggacg tttggagctg gagagagttg gccgaccgac
2901 cacgaggcac aaattcgatg ggaagccatc gttggcatcg cccccaacac
2951 ctatgcaacc tggctactaa agatccacac gtacgaacag ctcatgacta
3001 tcgccccgcc caaagccgac aacactgcta agccgaagct ccaacactcc
3051 ctcgacccaa cagtcccggg agtggaagcc cctcctagca ccgatccggc
3101 cccagatcac gctacgatag gagtgagcca gtcgtcggcc atcgacctca
3151 tgaacgccat cgaggacaag gtcgagttcg ccatcgccaa cgttgcatcc
3201 cgcatgagtc gcggactgcc accagcaccc cgttcgctgc tggctcctca
3251 gacggaccgt caacctggag aaaaccagga ttgcttattt ggccccaatg
3301 agaagaagaa gaagaagaag agcggacccc ccacagcaaa acatcgggca
3351 gccccggcgg tgacaccaac agcaccaccc gccgaagagg aaccaacaac
3401 agcaccatcc gccccagcac cggcaccaat ccccatcgaa gatctgatgg
3451 ccatggctga cgccggcaac ctacgaagac ctaggcggtc cacggttcct
3501 aaccctaatg cctctcaccc gagaggaagg ccaccaccac ccagtggagt
3551 cacctaacgg tgactaggcc gaaacgtgtg tcagagcgcg aacactccaa
3601 cctactctga cgtcccttaa ggactggt