Sequence of DPV Santeuil nodavirus
Santeuil nodavirus isolate JU1264 segment RNA1, complete sequence.
ACC No: HM030972
Dated: 2011-02-06 | Length: 3628 | CRC: -1389328721
ID HM030972; SV 1; linear; genomic RNA; STD; VRL; 3628 BP. XX AC HM030972; XX DT 06-FEB-2011 (Rel. 107, Created) DT 06-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Santeuil nodavirus isolate JU1264 segment RNA1, complete sequence. XX KW . XX OS Santeuil nodavirus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Nodaviridae; OC unclassified Nodaviridae. XX RN [1] RP 1-3628 RA Felix M.-A., Ashe A., Piffaretti J., Wu G., Nuez I., Belicard T., Jiang Y., RA Zhao G., Franz C.J., Goldstein L.D., Sanroman M., Miska E.A., Wang D.; RT "Natural and Experimental Infection of Caenorhabditis Nematodes by Novel RT Viruses Related to Nodaviruses"; RL PLoS Biol. 9(1):e1000586-e1000586(2011). XX RN [2] RP 1-3628 RA Wang D.; RT ; RL Submitted (23-MAR-2010) to the EMBL/GenBank/DDBJ databases. RL Molecular Microbiology, Washington University in St. Louis, 4940 Parkview RL Place, St. Louis, MO 63110, USA XX FH Key Location/Qualifiers FH FT source 1. .3628 FT /organism="Santeuil nodavirus" FT /segment="RNA1" FT /host="Caenorhabditis briggsae" FT /isolate="JU1264" FT /mol_type="genomic RNA" FT /country="France" FT /collection_date="2007" FT /db_xref="taxon:977913" FT CDS 609. .3557 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="protein A" FT /protein_id="ADW54431.1" FT /translation="MESSPITPSRKGFLAKTQDAATTFIRHSVPIPVLGMIRALEVLTG FT SKVAAVLLTPTSLIAAVNQLYRWIAYLAAKRTGVKIPKVFSFGIHAFSLYLVYKFARIV FT YHWVFNKDLAENAIRQRDNWTAISLWAGVQIHGEVKARMFRPLLPANHTTHRSWTTVED FT TIVLTTNDQTTHHPNLIAWNGEIVLTQDICFPLHVSCSRRPGDTLFIDYVFKRSSNIAP FT HSITGTLFSTDLMSNNQYSCRSEWHGGALNVYLAPARSYTTFSTTRKNWETIMHQFTVN FT GAKAQNYTVMNLLQTLIPTSQQADRLFAGGLIASYWNRCADMDVIEERVRHRGEIQFVN FT DVRDDKFAPWKLTGRTVGPHFVTTPNTMPYKGHQNDLSAIEFRLDAKRNPHETLSQNVH FT AKMDEFVKLLNPQKIHRWTHRQVIENQTKPMQIRRNEEAAKVIGWLHALKCKVKAMLKV FT EAINQSGATRNISTVGAEFNLEYGSFMLPAAEWLKQNTKWYTAGKPPKEIAIRVRELAT FT QARTRNAEPYLCCADVSKMDAGKHVEITAYLLSVIYFSMFPDDIDTLANLRTTEATAEA FT HTNTGMKYKIGGSQLSGSASTTIDNTVTNAFISYYAHRVEGRCPTEAYAALGIYVGDDS FT VSHNTTESIEQAGRDLGYTLTSEIIKEGEPVPFLSRYFYQPWEQGLSSFQDPMRLLSKL FT HLSIAPMYIPDATAFLNKMRGLTELDPAIFLYKALYDKMQDLVGIVGTSNSDDTPWYTR FT TFGAGESWPTDHEAQIRWEAIVGIAPNTYATWLLKIHTYEQLMTIAPPKADNTAKPKLQ FT HSLDPTVPGVEAPPSTDPAPDHATIGVSQSSAIDLMNAIEDKVEFAIANVASRMSRGLP FT PAPRSLLAPQTDRQPGENQDCLFGPNEKKKKKKSGPPTAKHRAAPAVTPTAPPAEEEPT FT TAPSAPAPAPIPIEDLMAMADAGNLRRPRRSTVPNPNASHPRGRPPPPSGVT" XX SQ Sequence 3628 BP; 1011 A; 1128 C; 826 G; 663 T; 0 other; hm030972 Length: 3628 06-FEB-2011 Type: N Check: 7125 .. 1 tattatcata ctgacaatgg taatatgcga gagcgatagc aagcactaga 51 aacgagttac gcaaccacag acagcaagcc cggaaggcgc gcagagactg 101 aacacctctg tgtggctgaa ggctccccac taaccctgga gagaagtggc 151 agaaccacag cctagtacta gccgcaaggc ttaagaaact aggtgtagct 201 gagtcctttc ccttaaacaa ggattggacc acttgtagga tccgtgtatt 251 caaacgatct ggcagcacta tggctcggac aggtacaacc aataaacaca 301 agcgttttga gaaaccggcg tgattgtacc gcagttttaa aggagcttca 351 aaccctccca gccgaaagat caaacgaagt cgtagttgaa ctaacgtagt 401 aggggagcgg cgtttgagga tgttcacggg tcagtaacgt gaatagcttc 451 attcgtgacg tgctcaaacc accgtatagg ttcgccttag tcattagcag 501 ggatggctag gttcagctgc gcatgcacaa accacaacaa taaactaaac 551 tttattcgcg tatttgtgca ttcccgttgc ccacccacac tcctaacaaa 601 tttcaagtat ggagtcgtca ccaatcaccc cctctcgaaa aggcttccta 651 gctaaaacgc aggacgccgc cacaaccttc atccgccact cagtcccaat 701 ccccgtactc ggtatgattc gggcccttga agtgcttact ggaagcaaag 751 tagccgcagt gctcttgacc cccacttctc taatcgcagc cgtcaaccag 801 ctttaccgtt ggattgctta tttggccgct aagaggacag gagtcaagat 851 cccaaaagtg ttttcgttcg gaatccacgc attctcgttg tatctggtct 901 acaagttcgc gagaatcgtg taccattggg tcttcaataa ggacctcgcc 951 gaaaacgcca tccgtcaacg tgacaactgg acagccatct ccttgtgggc 1001 tggagtccag atccacggag aagtgaaagc tcggatgttt agaccactgc 1051 tacccgccaa ccacacaacg caccgctcat ggaccacagt agaagacaca 1101 atcgtactca cgaccaacga ccagaccaca caccacccca acttgatcgc 1151 ctggaacgga gagatcgtcc tcactcagga catctgcttc ccgctccatg 1201 taagttgttc cagaaggcca ggagacacgt tattcatcga ttacgtgttc 1251 aaacgaagtt ccaacatcgc cccacactcg atcaccggta ccctcttctc 1301 caccgatctg atgtccaaca accagtactc ttgccgtagt gaatggcacg 1351 gaggcgctct aaacgtatac ctcgcccccg ccagatccta caccaccttc 1401 tccacgacaa ggaagaactg ggagaccatc atgcaccaat tcaccgttaa 1451 cggcgcgaaa gcccagaact acacggtgat gaatctgctc cagacgctaa 1501 tccccacctc acagcaggcc gaccgcctgt tcgccggagg gttgatcgca 1551 tcctactgga acagatgtgc cgacatggac gtcatcgagg agagagtccg 1601 ccaccgcggt gagatccaat tcgtgaacga tgtcagagat gacaagttcg 1651 ccccatggaa actcaccggc agaaccgtcg gaccacactt cgtcaccacc 1701 cctaacacca tgccatacaa aggacaccag aatgacttat cggccatcga 1751 gtttagactc gacgccaaac ggaaccccca tgagactctc agccaaaacg 1801 tccacgccaa gatggatgag ttcgtaaaac tactcaatcc acagaagatc 1851 cacagatgga cacacagaca ggtcattgag aaccagacga aaccaatgca 1901 aatccgcaga aatgaggagg ctgcaaaggt catcggttgg ctccatgccc 1951 tgaagtgcaa agtcaaggct atgctgaaag ttgaagccat caaccaatcc 2001 ggagccacca gaaacatcag cacagtcggg gccgaattca accttgaata 2051 cggttccttc atgcttcccg ctgctgaatg gctcaagcag aacacgaaat 2101 ggtacacagc tggtaaaccc ccaaaggaga tagccatccg agtaagggaa 2151 ctagccaccc aggcaagaac ccgaaacgct gaaccatatc tgtgctgcgc 2201 ggatgtctcc aagatggatg ccggaaaaca cgtcgagata actgcctacc 2251 tactctcagt catatacttc tccatgttcc cagatgatat cgacaccctc 2301 gccaacctca ggacaaccga ggccacagcc gaggcacaca cgaacactgg 2351 aatgaagtac aaaatcggag gcagtcaact gtctggaagc gccagcacca 2401 ccatcgacaa cacagtcacc aacgctttca tctcctacta cgctcaccgc 2451 gtcgaaggaa gatgtccgac agaggcttat gccgctctcg gaatctacgt 2501 tggtgatgac tcggtcagcc acaacaccac ggaatccatc gaacaagccg 2551 ggcgtgacct cggttacacc ctcacctccg agatcatcaa ggaaggcgag 2601 ccagttccgt tcctgtcccg gtacttctac caaccatggg aacagggact 2651 cagctcattc caagacccga tgcgactcct atccaaactc cacctctcca 2701 tagcaccaat gtacatcccg gacgccaccg cattcctcaa caagatgcga 2751 ggactcaccg agttggaccc cgccatcttc ctctacaagg ctctgtatga 2801 taaaatgcag gaccttgttg ggattgtcgg gacctccaac tcagacgaca 2851 caccgtggta caccaggacg tttggagctg gagagagttg gccgaccgac 2901 cacgaggcac aaattcgatg ggaagccatc gttggcatcg cccccaacac 2951 ctatgcaacc tggctactaa agatccacac gtacgaacag ctcatgacta 3001 tcgccccgcc caaagccgac aacactgcta agccgaagct ccaacactcc 3051 ctcgacccaa cagtcccggg agtggaagcc cctcctagca ccgatccggc 3101 cccagatcac gctacgatag gagtgagcca gtcgtcggcc atcgacctca 3151 tgaacgccat cgaggacaag gtcgagttcg ccatcgccaa cgttgcatcc 3201 cgcatgagtc gcggactgcc accagcaccc cgttcgctgc tggctcctca 3251 gacggaccgt caacctggag aaaaccagga ttgcttattt ggccccaatg 3301 agaagaagaa gaagaagaag agcggacccc ccacagcaaa acatcgggca 3351 gccccggcgg tgacaccaac agcaccaccc gccgaagagg aaccaacaac 3401 agcaccatcc gccccagcac cggcaccaat ccccatcgaa gatctgatgg 3451 ccatggctga cgccggcaac ctacgaagac ctaggcggtc cacggttcct 3501 aaccctaatg cctctcaccc gagaggaagg ccaccaccac ccagtggagt 3551 cacctaacgg tgactaggcc gaaacgtgtg tcagagcgcg aacactccaa 3601 cctactctga cgtcccttaa ggactggt