Sequence of DPV Rice ragged stunt virus

Rice ragged stunt virus isolate CT segment 9, complete sequence.

ACC No: HM125547

Dated: 2011-05-01 | Length: 1132 | CRC: 723099311

                
ID   HM125547; SV 1; linear; genomic RNA; STD; VRL; 1132 BP.
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AC   HM125547;
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DT   01-MAY-2011 (Rel. 108, Created)
DT   01-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE   Rice ragged stunt virus isolate CT segment 9, complete sequence.
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KW   .
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OS   Rice ragged stunt virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Oryzavirus.
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RN   [1]
RP   1-1132
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   "Phylogenetic evidence for origin and evolution of rice rigged stunt
RT   virus";
RL   Unpublished.
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RN   [2]
RP   1-1132
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   ;
RL   Submitted (15-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Plant Virology, Fujian Agricultural and Forestry University,
RL   Fuzhou, Fujian 350002, P.R. China
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CC   GenBank Accession Numbers HM125539-HM125548 represent sequences
CC   from the 10 segments of Rice ragged stunt virus.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1132
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="9"
FT                   /host="rice"
FT                   /isolate="CT"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Changting, Fujian province"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:42475"
FT   CDS             14. .1030
FT                   /codon_start=1
FT                   /product="spike protein"
FT                   /note="RRSVs9gp1; P9"
FT                   /protein_id="AEC32889.1"
FT                   /translation="MKTAFARDPFTAPATGTYGTIYASRSLPRLSISKFLEDANPEIYE
FT                   LSRYEALGTNRPSSGKRAMQPAVSKPALLETVFTLDIWYRRTNNQNIGNLRDSVSRFLS
FT                   DDRVREAVMVRLDLDIVVQLKEYWLIVKDKEAQTFADRLAFDSHLFVNRGENANYDLVT
FT                   QTFIPSDAFLKDNFKTEALKKLLLSVQNHTGLDAGLQGDSSKATYNIGLGQYLEDEALL
FT                   YRQGVALQQMAFAELELARGAEKEAFPSTFDLSNRPACNLILKRTCKWYQQTFKAEERK
FT                   EFAKSLWVDDFAEANWNTGNLSFGFSTTLNVIERWRLTRFYVHMYSSVHIYSQKASG"
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SQ   Sequence 1132 BP; 332 A; 237 C; 273 G; 290 T; 0 other;

hm125547 Length: 1132  01-MAY-2011  Type: N  Check: 5807  ..

       1  gataaatctc gccatgaaga ctgcctttgc cagagatcct tttacagctc
      51  ctgctacagg tacgtacgga actatatatg cctccagatc attaccccga
     101  ctctctatct ctaagttctt ggaagatgca aatccagaaa tttatgaact
     151  atcaagatat gaagcgctcg gaaccaacag acccagctca gggaagcgag
     201  caatgcaacc agccgtcagt aaaccagctt tactggaaac cgtattcaca
     251  ctcgatatat ggtacagaag gacgaacaac cagaacatcg gcaatttaag
     301  agattcggta tctcgatttc tatctgatga tcgagtaaga gaagcggtga
     351  tggtgcgact agatttagac attgttgtcc agctaaaaga atactggttg
     401  atagttaaag acaaagaagc ccagactttc gcggaccgat tggcctttga
     451  ctcgcatcta tttgtcaatc gcggcgaaaa cgcgaattac gatcttgtaa
     501  ctcagacgtt cattccgagt gatgcttttc ttaaggataa ctttaagacg
     551  gaagcactta agaagttgtt gctaagtgtc caaaaccata cgggactaga
     601  cgctggattg caaggtgata gttcgaaagc gacttacaac attggcctag
     651  gacaatatct cgaggatgag gccctcctgt accgtcaagg tgtggctcta
     701  caacaaatgg cttttgcgga gttggaatta gctaggggag cagagaaaga
     751  ggcgtttcca tcaaccttcg atctaagcaa tagaccggct tgcaacttga
     801  tccttaagcg aacgtgtaag tggtatcaac aaacgtttaa ggctgaggag
     851  agaaaggaat ttgcgaagag tttgtgggtg gatgactttg ccgaggctaa
     901  ttggaacaca ggtaatttgt cttttggctt ttcaaccaca ttaaatgtaa
     951  ttgagagatg gcgtttgacc agattttatg ttcatatgta ctcatctgtg
    1001  catatatatt ctcagaaggc ctcggggtag gaaacgctgg ggatcaaggt
    1051  gaattgaaat gaggacttct caccctcatg gacattcggc ctcttcacgg
    1101  gtggcacccc gaaaactgcg agaccatggt gc