Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus-HD [India:New Delhi:Papaya:2007], complete genome.
ACC No: HM140365
Dated: 2012-07-04 | Length: 2763 | CRC: 1193495382
ID HM140365; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
XX
AC HM140365;
XX
DT 19-NOV-2010 (Rel. 106, Created)
DT 04-JUL-2012 (Rel. 113, Last updated, Version 3)
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DE Chilli leaf curl virus-HD [India:New Delhi:Papaya:2007], complete genome.
XX
KW .
XX
OS Chilli leaf curl virus-HD [India:New Delhi:Papaya:2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2763
RX PUBMED; 22437254.
RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.;
RT "Spatial and temporal diversity of begomoviral complexes in papayas with
RT leaf curl disease";
RL Arch. Virol. 157(7):1217-1232(2012).
XX
RN [2]
RP 1-2763
RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.;
RT ;
RL Submitted (21-APR-2010) to the INSDC.
RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Chilli leaf curl virus-HD [India:New
FT Delhi:Papaya:2007]"
FT /segment="DNA-A"
FT /host="Carica papaya"
FT /isolate="HD"
FT /mol_type="genomic DNA"
FT /country="India:New Delhi"
FT /isolation_source="leaf"
FT /collection_date="Jun-2007"
FT /db_xref="taxon:913596"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /note="pre-coat protein"
FT /db_xref="GOA:E5F1J6"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E5F1J6"
FT /protein_id="ADQ13193.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL
FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ
FT EAQDVQDVQKPRCS"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /note="coat protein; encapsidation/insect transmission"
FT /db_xref="GOA:E5F1J7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E5F1J7"
FT /protein_id="ADQ13194.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1074. .1478)
FT /gene="AC3"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /note="replication enhancer protein"
FT /db_xref="GOA:E5F1J8"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E5F1J8"
FT /protein_id="ADQ13195.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI
FT ITVQIQFNHNLRKALGIHKCFLTYRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN
FT VLRAVNHVLWNVLAQTIHVHSSNIIKFNLY"
FT gene complement(1219. .1623)
FT /gene="AC2"
FT CDS complement(1219. .1623)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /note="transcription activator protein"
FT /db_xref="GOA:E5F1J9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E5F1J9"
FT /protein_id="ADQ13196.1"
FT /translation="MRPSSPSKAHSTQLPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRPDTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1526. .2611)
FT /gene="AC1"
FT CDS complement(1526. .2611)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /note="replication associated protein"
FT /db_xref="GOA:E5F1K0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E5F1K0"
FT /protein_id="ADQ13197.1"
FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR
FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV
FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH
FT NLSANLDRIFTPPLEVYVSPFCSSSFDQVPEELEDWAAENVLGAAARPLRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSASNQSAAQAGQEGDQASSS"
FT gene complement(2161. .2460)
FT /gene="AC4"
FT CDS complement(2161. .2460)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E5F1K1"
FT /protein_id="ADQ13198.1"
FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIQTFRELK
FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2763 BP; 734 A; 568 C; 653 G; 808 T; 0 other;
hm140365 Length: 2763 04-JUL-2012 Type: N Check: 8098 ..
1 accggatggc cgcgattttt ttcaccgtgg gccccaccac gcacgtgctg
51 acaaagatat gtgcaccaat taaaatcgtc cctcatagct taattatttc
101 atggtccccc ctataaactt gggctccaag tagtgcactc ttaccaatgt
151 gggatccatt agtaaacgag tttcctgaaa ccgttcacgg ttttaggtgt
201 atgttagcag ttaaatatct gcagctacta gaaaatacat atgctccaga
251 cactctgggg tacgatttaa tcagggattt gatctccgtt attagggcta
301 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc
351 gaaggtacgc cgccgtctca acttcgacag cccttatgcc agccgtgctg
401 ctgcccccac tgtccgcgtc acaaaggcca gagcatgggt gaacaggccc
451 atgaacagga agcccaggat gtacaggatg tacagaagcc cagatgttcc
501 taggggttgt gaaggcccat gtaaggtcca gtcttttgag tctagacacg
551 atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt
601 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta
651 cgtattaggg aagatatgga tggatgagaa tatcaagact aagaatcaca
701 cgaatagtgt gatgtttttc cttgtccgtg atcgtcgtcc tgttgataaa
751 ccacaagatt ttggagaggt gttcaacatg tttgacaacg agcctagcac
801 tgccactgtg aagaatatgc atagagatcg ttatcaggtt ttgaggaaat
851 ggcacgcaac ggttactggt ggacagtacg cgtcgaagga acaggcatta
901 gttaagaagt tcgttagggt taataattat gttgtgtata accagcagga
951 agctggtaaa tatgagaatc atactgagaa tgcattgatg ttgtacatgg
1001 cgtgtacgca tgcctctaac cccgtgtatg ccactttgaa gatacggatc
1051 tacttctatg attcagtatc gaattaataa agattgaatt ttattatatt
1101 tgaactgtgt acatgaattg tttgtgctaa tacattccat aatacatggt
1151 tgacagctct aagtacattg tttatactaa ttacagcaaa attatttaaa
1201 tacttataca cttgtgtcct aaataccctt aagaaatgac cagtctgagg
1251 ctgtaaggtc gtccagattc ggtaggttag aaaacatttg tgtatcccca
1301 acgctttcct caggttgtga ttgaactgta tctggacggt gatgatgtct
1351 tggttcctca ggaatggccg gttgtggtgc tcggttatct tgaaatacag
1401 gggatttgtt atctcccaaa taaacacgcc attctctgcc tgagctgcag
1451 tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgcgat
1501 gaaatatgaa cagccgcagt ctaggtcaac tcgacgacgc ctggtccccc
1551 tcttggccag cctgtgctgc actttgattg gaagctgagt agagtgggcc
1601 ttcgagggtg atgaaggtcg cattctttaa agcccaattt ttgagtgcgc
1651 tatttttctc ttcatccaag aactctttat agctggaatt gggtcctgga
1701 ttgcagagga agatagcggg aattccacct ttaatttgaa ctggctttcc
1751 gtattttgtg ttggattgcc agtccctttg ggcccccatg aattccttaa
1801 agtgctttag gtagtgggga tcgacgtcat caatgacgtt gtaccaggcg
1851 tcattactgt agacctttgg gctaaggtcg agatgtccac acaaatagtt
1901 gtgtggacct agtgacctgg cccacattgt cttgcccgtt ctactatcgc
1951 cctctatcac aatacttatg ggtctcaatg gccgcgcagc ggcaccgaga
2001 acattctcgg cagcccagtc ttcgagttcc tccggaactt gatcgaaaga
2051 agaagaacaa aaaggagaaa cataaacctc caacggaggc gtaaaaatcc
2101 tatctaaatt agcacttaaa ttatgaaatt gtaatacaaa atctttggga
2151 gctttctccc ttaatatatt gagggccgca gctttggacc ctgaattgat
2201 tgcctcggca tatgcgtcgt tggcagactg ctgacctcct ctagctgatc
2251 ttccatcgac ttggaaaact ccaaaatcaa tgaagtctcc gtttttttcc
2301 acataggcct tgacatctga cgagctttta gctccctgaa tgtttggatg
2351 gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt
2401 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc
2451 ccattttcat gtaattcgcg acaaaccctg atgaacaatt tattagtggg
2501 ggtgcttagg ttttgaagtt gggaaagtgc ttcttcttta gtgagggaac
2551 actgtggata tgttaagaaa taatttttag catatatttg aaaacgtttt
2601 ggaggagcca tgttgacttg gtcaatcggt actcaacaaa cttggctatg
2651 caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt
2701 cgtaattttg aaggcaaatt caaaattcaa attccgacaa aagcggccat
2751 ccgcactaat att