Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate Linstead2 coat protein gene, complete cds.
ACC No: HM160502
Dated: 2012-05-28 | Length: 672 | CRC: -91085918
ID HM160502; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC HM160502; XX DT 28-MAY-2012 (Rel. 112, Created) DT 28-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Citrus tristeza virus isolate Linstead2 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Fisher L.C., Tennant P.F., McLaughlin W.A.; RT "Molecular characterization of the coat protein gene of some biological RT Jamaican Citrus tristeza virus isolates"; RL Unpublished. XX RN [2] RP 1-672 RA Fisher L.C., Tennant P.F., McLaughlin W.A.; RT ; RL Submitted (28-APR-2010) to the INSDC. RL Life Sciences, University of the West Indies, Mona Campus, 2 St. John's RL Close, Kingston 7 0, Jamaica XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus sp." FT /strain="severe" FT /isolate="Linstead2" FT /mol_type="genomic RNA" FT /country="Jamaica" FT /collection_date="Mar-2007" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEG77335.1" FT /translation="MDDETKKLKNKNKEAKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 195 A; 124 C; 171 G; 182 T; 0 other; hm160502 Length: 672 28-MAY-2012 Type: N Check: 1923 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aagcgaaaga 51 aggcgacgat gttgtagctg ccgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgggcacc 151 caacagaacg ctgctttgaa cagagactta ttccttactt tgaaagggaa 201 gtatcctaac ttacctgata aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc 301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgataa 351 actttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta 401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt 451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg 501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg 551 gtttgactga cttagaatgt gctgtgtaca tacaagctaa agaacaatta 601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga