Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate Knockalva1 coat protein gene, complete cds.
ACC No: HM160517
Dated: 2012-05-28 | Length: 672 | CRC: 442376637
ID HM160517; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC HM160517; XX DT 28-MAY-2012 (Rel. 112, Created) DT 28-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Citrus tristeza virus isolate Knockalva1 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Fisher L.C., Tennant P.F., McLaughlin W.A.; RT "Molecular characterization of the coat protein gene of some biological RT Jamaican Citrus tristeza virus isolates"; RL Unpublished. XX RN [2] RP 1-672 RA Fisher L.C., Tennant P.F., McLaughlin W.A.; RT ; RL Submitted (28-APR-2010) to the INSDC. RL Life Sciences, University of the West Indies, Mona Campus, 2 St. John's RL Close, Kingston 7 0, Jamaica XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus sp." FT /strain="severe" FT /isolate="Knockalva1" FT /mol_type="genomic RNA" FT /country="Jamaica" FT /collection_date="Mar-2007" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEG77350.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGTVLTPSRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 196 A; 124 C; 170 G; 182 T; 0 other; hm160517 Length: 672 28-MAY-2012 Type: N Check: 981 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga 51 aggcgacgat gttgtagctg ccgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgggcacc 151 caacagaacg ctgctttgaa cagagactta ttccttactt tgaaagggaa 201 gtatcctaac ttacctgata aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc 301 actggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgataa 351 actttggact gacgtcgtgt ttaactctaa gggtattggt accgtactaa 401 cgccttcgag agtttggggt agaactaacg atgcccttta cttagccttt 451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg 501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg 551 gtttgactga cttagaatgt gctgtgtaca tacaagctaa agaacaatta 601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga