Sequence of DPV Honeysuckle yellow vein virus
Tobacco leaf curl virus isolate TLCV-Korea-SC1, complete genome.
ACC No: HM164548
Dated: 2010-09-07 | Length: 2764 | CRC: -599630002
ID HM164548; SV 1; circular; genomic DNA; STD; VRL; 2764 BP.
XX
AC HM164548;
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DT 07-SEP-2010 (Rel. 106, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Tobacco leaf curl virus isolate TLCV-Korea-SC1, complete genome.
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KW .
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OS Tobacco leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2764
RA Lee H.J., Song W.G., Kwak H.R., Kim J.D., Kim M.K., Park J.A., Lee S.C.,
RA Choi H.S.;
RT "Molecular phylogenetic relationships of Tomato Yellow Leaf Curl Virus
RT (TYLCV) and Bemisia tabaci";
RL Unpublished.
XX
RN [2]
RP 1-2764
RA Kim M.K., Kwark H.R., Kim J.D., Lee H.J., Park J.A., Lee S.C., Choi H.S.;
RT ;
RL Submitted (29-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Departement of Agricultural Biology, Agricultural Microbiology Division,
RL National academy of Agricultural Science, RDA, 150, Suinro, Kwoenseon-gu,
RL Suwon, Gyeongi-do 441-707, Repubilc of Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2764
FT /organism="Tobacco leaf curl virus"
FT /host="tomato"
FT /isolate="TLCV-Korea-SC1"
FT /mol_type="genomic DNA"
FT /country="South Korea"
FT /collection_date="Nov-2007"
FT /db_xref="taxon:67762"
FT gene 138. .479
FT /gene="V2"
FT CDS 138. .479
FT /codon_start=1
FT /gene="V2"
FT /product="movement protein"
FT /protein_id="ADM47751.1"
FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL
FT IGVIRAKNYVQASCRYRDFHSRLEGTAPSELRQPVCQPCECPHCPRHKQKEIMGSKAHV
FT QEAQDVPNV"
FT gene 298. .1071
FT /gene="V1"
FT CDS 298. .1071
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="ADM47750.1"
FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRASAPIALVTNKRRSW
FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGNGLTH
FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE
FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAVIKRFWKLNHHVTYNHQEQAKYEN
FT HTENALLLYMAATHASNPVYATLKIRVYFYDSVQN"
FT gene complement(1068. .1472)
FT /gene="C3"
FT CDS complement(1068. .1472)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="ADM47752.1"
FT /translation="MDSRTGVTITAAQAWNGAYIWTVPNPLYFKITKHAQRPFNMDQDI
FT ITIQIQFNHNLRSQLGLHKCFLTFNIWTLLHPQTSHFLRVFRTQVLKYLDNLGVISINN
FT VIRAVDHVLYNVLEGTEYVQTLHDIKFKLY"
FT gene complement(1213. .1620)
FT /gene="C2"
FT CDS complement(1213. .1620)
FT /codon_start=1
FT /gene="C2"
FT /product="transactivator protein"
FT /protein_id="ADM47753.1"
FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL
FT GCANNGFTHRGHHHCSSGMEWRIYLDSAKSPIFQNHEARTAPIQHGSGHNNYTDTIQPQ
FT PQIATGSTQVLPDLQYLDSLTSSDLAFLEGI"
FT gene complement(1520. .2611)
FT /gene="C1"
FT CDS complement(1520. .2611)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="ADM47754.1"
FT /translation="MAPPRRFKINSKNYFLTYPHCSLTKEEALSQIRALETPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDVIDFGVFQVDGRSARGGCRSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH
FT NLNSNLDRIFAPPLEEFVCPFLSSSFDQVPEELESWAAENVRDSAARPWRPVSIVIEGD
FT SRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRD
FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEEKNAALKAWAIKNATFVTLYGS
FT LYSGTHQGATQIREEESTSQAED"
FT gene complement(2161. .2454)
FT /gene="C4"
FT CDS complement(2161. .2454)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ADM47755.1"
FT /translation="MGALICTSSSNSKENTNAQINDSSISYPHLGQHISIRTFRELRAR
FT RTLRPTWKKTETSLILEFSRSMEDQLEEVAGLPTTHMPRQSTQDPSHRPCLY"
XX
SQ Sequence 2764 BP; 714 A; 552 C; 657 G; 841 T; 0 other;
hm164548 Length: 2764 07-SEP-2010 Type: N Check: 4763 ..
1 accggatggc cgcccgaaat ttcgtggtgg tccccccctt gtcggccaat
51 gagatttgtg ctgtggaagt aagataagtg gaaagtgacg tatgcttttg
101 tctttatata cgtcagccct aattttaacg gtgtgagatg tgggatcctt
151 tacttaacga tttccctgaa accgttcacg gtttcaggtg tatgctagcg
201 gttaaatacc ttcttcttgt agaggctacg tattctccgg atacggtggg
251 ttacgatttg atacgtgatc ttataggtgt gattcgtgcg aagaattatg
301 tccaagcgtc ctgcagatat agggattttc actcccgtct cgaaggtacg
351 gcgccgtctg aacttcgaca gcccgtatgc caaccgtgcg agtgccccca
401 ttgccctcgt cacaaacaaa aggagatcat gggctcaaag gcccatgtac
451 aggaagccca ggatgtaccg aatgtataga agccctgatg tgcctaaggg
501 gtgtgaaggc ccgtgtaagg tccagtcatt tgagaagaaa aatgatgtgg
551 gtcattctgg taccctgctt tgtgtgtctg atattacccg tggtaatggg
601 cttactcatc gtgttgggaa gaggttttgt ataaaatctg tttatattat
651 tggtaaaata tggatggatg aaaatattaa gactaagaat cacactaaca
701 atgtgttatt ctggttagtt agagatcgaa gacctggttc aacgccatat
751 ggttttcagg aggcatttaa tatgtttgag aatgaaccca gtacggccac
801 tgtgaaacag gaattaaggg atcgtttgca ggtgttacac cggttcagtg
851 caactgttac tggtggacaa tatgcgtcta aggaacaagc tgtcataaag
901 aggttctgga agttgaatca ccatgtcact tacaaccatc aagagcaggc
951 taaatatgag aatcatacgg aaaatgcttt attattgtat atggctgcta
1001 ctcatgccag taatccagtg tatgctacat taaaaatcag agtgtatttc
1051 tacgattcag tacagaatta ataaagtttg aattttatat catgaagtgt
1101 ttgtacatac tctgttccct ctaatacatt atacaataca tgatcaactg
1151 ccctaattac attgttaatt gaaattacac ccaaattatc taaatacttt
1201 aacacttggg tcctaaatac cctcaagaaa tgcgaggtct gaggatgtaa
1251 gagagtccaa atattgaagg tcaggaagca cttgtgtaga cccagttgcg
1301 atctgaggtt gtggttgaat tgtatctgta tagttattat gtcctgatcc
1351 atgttgaatg ggcgctgtgc gtgcttcgtg attttgaaat ataggggatt
1401 tggcactgtc cagatatatg cgccattcca tgcctgagct gcagtgatgg
1451 tgacccctgt gcgtgaatcc attgtttgca caacccaatg cgacgtaaat
1501 agaacacccg cagttcagat caatcctccg cctgcgaggt gctctcctct
1551 tctctgatct gtgtcgcacc ttgatgggta cctgagtaga gtgagccgta
1601 gagggtgacg aaggttgcat ttttaattgc ccatgccttt agggctgcgt
1651 tcttctcttc gtctaaatac tcggtgtatg atgacgttgg gcctggattg
1701 cagaggaaga ttgttgggat accgcctttt atttgaattg gtttcccgta
1751 cttggtgttg ctttgccagt ccctttgggc ccccatgaat tccttaaagt
1801 gctttaggta gtggggatct acgtcatcaa tgacgttgta ccaggcgtcg
1851 ttgctgtaaa ccttggggct taagtcaaga tggccgcaaa ggtaattatg
1901 acgtggatgt aatgacctgg cccacatggt cttccctgtc ctgctatccc
1951 cctctatcac aatactcacg ggtctccacg gccgcgcagc ggaatccctg
2001 acgttctcgg cagcccatga ctcaagttct tctggaactt gatcaaaaga
2051 agaagataaa aatggacaaa caaattcctc caacggagga gcaaaaatcc
2101 tatctaaatt actatttaaa ttatgaaact gtaaaacaaa atctttggga
2151 gctttctccc ttaatataga caaggccgat gacttggatc ctgagttgat
2201 tgcctcggca tatgcgtcgt tggcagaccg gcaacctcct ctagctgatc
2251 ttccatcgac ctggaaaact ccaaaatcaa tgacgtctcc gtctttttcc
2301 atgtaggtct taacgtccga cgagctctta gctccctgaa tgttcggatg
2351 gaaatgtgct gacctagatg gggatacgag atcgaagaat cgttgatttg
2401 tgcattggta ttttccttcg aattggatga ggacgtgcag atgagggctc
2451 ccatcttcgt gtagttctct gcaaattcgg atgaataatt tattggttgg
2501 cgtttctagg gctcgaattt gggaaagggc ttcttctttg gttagagaac
2551 agtgtgggta tgtgaggaaa taatttttgc tatttatttt aaatcgtctt
2601 gggggtgcca tatttacaaa tatgcccttg taccccgatt gggagagaat
2651 tcttctttgc tgtgtatcgg tgtaatgggg tacaatatat actccttgtg
2701 tttttacttt tggaattttg aaattcaaaa tttaaattgg taaagcggcc
2751 atccgtataa tatt