Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDHZ36 segment S10, complete sequence.
ACC No: HM188453
Dated: 2013-01-31 | Length: 1801 | CRC: 138716348
ID HM188453; SV 1; linear; genomic RNA; STD; VRL; 1801 BP. XX AC HM188453; XX DT 31-JAN-2013 (Rel. 115, Created) DT 31-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDHZ36 segment S10, complete DE sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1801 RA Zhu Q.; RT "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in RT China"; RL Unpublished. XX RN [2] RP 1-1801 RA Zhu Q.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .1801 FT /organism="Rice black streaked dwarf virus" FT /segment="S10" FT /host="maize" FT /isolate="SDHZ36" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="20-Jul-2008" FT /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca, FT rev_name: P2, rev_seq: gacaatagctgaatttcccccta" FT /db_xref="taxon:10990" FT 5'UTR 1. .21 FT CDS 22. .1698 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="ADI33168.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVIR" FT 3'UTR 1699. .1801 XX SQ Sequence 1801 BP; 572 A; 330 C; 328 G; 571 T; 0 other; hm188453 Length: 1801 31-JAN-2013 Type: N Check: 3831 .. 1 aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc 51 cgatcttatc cataatggtg taccccagag actttccgat acaataattt 101 tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt 151 catgaattaa acattgtcaa atcgccccac gttgcatctt cccaaactac 201 cgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac 251 tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac 301 catattcgta gcttctttca aaatgaacat caacctattt ttcagacact 351 aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac 401 taagcttgtt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta 451 caaattgaga ccctaactga aggaaacatt actttgaaac ccttttctgc 501 tgacggttta gaagtcattc tcgatgatag ttatattggt atagttggta 551 aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa 601 gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg 651 tactggtaaa ttaagaattg acggtggtta cgattttaat tgtcctgcaa 701 gcactactga tgttacacat tatggtggtt atgaccaatt ttcacgtcaa 751 atgttcgaac gtttgaatct attttataac attagcctta gcataattcc 801 cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa ctaagtgttt 851 tagatgcaga taaatcttta ctcgaacaaa cttggagcgc ggtagcgtca 901 tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga 951 tgaatatgaa ttgaccagtt tgtccacttt gcgcactaat tacgatggca 1001 cctctgcttc tagtcctttt acagataaga aattcattga ttggtacatt 1051 aagacttttt ctaagactga gaaaggatcg tcgttgcgtc gaaacgaatt 1101 agaagagaaa agtgccacta gtacttcaac tacagtaaag aaggttaaaa 1151 ttcatttttc cgttcaatat tttgatgaat ttaaggttaa tggacatgaa 1201 aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta 1251 tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt 1301 tggctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt 1351 catttagcac ccgtaattct gaagaagtat aatttgacta ttgatgacat 1401 tatcaacttt attgataaag gaccttctta tttagctaaa ttagacaaga 1451 ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct 1501 aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa 1551 ctcggtaatc atcagtagag cgaacaattt gttgaaatct gatagggaca 1601 ggctattaaa gaaggcactt tccgccaacg tttcttcttc caacacatct 1651 agtcatgaac atgtacagaa gatagtatta aacaaagtga taagatgacc 1701 actgggagta catccttagc gcgactagtt cagtgctgtg cgatcttcag 1751 ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt 1801 c