Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDJNi11 segment S10, complete sequence.
ACC No: HM188512
Dated: 2013-01-31 | Length: 1801 | CRC: -90431482
ID HM188512; SV 1; linear; genomic RNA; STD; VRL; 1801 BP. XX AC HM188512; XX DT 31-JAN-2013 (Rel. 115, Created) DT 31-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDJNi11 segment S10, complete DE sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1801 RA Zhu Q.; RT "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in RT China"; RL Unpublished. XX RN [2] RP 1-1801 RA Zhu Q.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .1801 FT /organism="Rice black streaked dwarf virus" FT /segment="S10" FT /host="maize" FT /isolate="SDJNi11" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="20-Jul-2008" FT /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca, FT rev_name: P2, rev_seq: gacaatagctgaatttcccccta" FT /db_xref="taxon:10990" FT 5'UTR 1. .21 FT CDS 22. .1698 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="ADI33227.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLCTLRTNYDGTSASSPFTDKKFID FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKSDRDRLLKKALSANVSPSNTSSHEHVQKIVLSKVTR" XX SQ Sequence 1801 BP; 575 A; 333 C; 328 G; 565 T; 0 other; hm188512 Length: 1801 31-JAN-2013 Type: N Check: 9797 .. 1 aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc 51 cgatcttatc cataatggtg taccccagag actttccgat acaataattt 101 tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt 151 catgaattaa acattgtcaa atcgccccac gttgcatctt cccaaactac 201 cgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac 251 tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagat 301 catattcgta gcttctttca aaatgaacac caacctattt ttcagaccct 351 aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac 401 taagcttatt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta 451 caaattgaga ccctaactga aggaaacatt actttgaagc ccttttccgc 501 tgatggttta gaagtcattc tcgatgatag ttatattggt atagttggta 551 aaattccagg tttagaagtt cataaattgt tagataaatg ttgtcgtgaa 601 gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg 651 tactggtaaa ttaagaattg atggtggtta cgattttaac tgtcctgcaa 701 gcactacgga tgttacacat tacggtggtt atgaccaatt ttcacgtcaa 751 atgttcgaac gtttgaatct attttataat attagcctta gcataatccc 801 cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa ctaagtgttt 851 tggatgcaga taaatctcta ctcgaacaaa cttggagcgc agtagcgtca 901 tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga 951 tgaatatgaa ttgaccagtt tgtgcacgtt gcgcactaat tacgatggca 1001 cctctgcttc tagtcctttc acagataaga aattcattga ttggtacatt 1051 aagacttttt ctaaaactga gaaaggatcg tcgttgcgtc gaaacgaatt 1101 agaagagaaa agtgccacta gtacttcaac tacagtaaag aaagttaaaa 1151 ttcatttctc tgttcaatat tttgatgaat ttaaagttaa tggacatgaa 1201 aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta 1251 tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt 1301 tagctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt 1351 catttagcac ccgtaattct gaagaagtat aacttgacta ttgatgatat 1401 tatcaacttc attgataaag gaccttctta tttagctaaa ttagacaaga 1451 ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttaccc 1501 aatatcattc aagctgttta caaaacagat ccaagtaata atgttatgaa 1551 ctcagtaatt atcagtagag cgaacaattt gttgaaatct gatagggaca 1601 ggctattaaa gaaggcactt tccgccaacg tttctccttc caacacatct 1651 agtcatgaac atgtgcagaa gatagtatta agcaaagtga caagatgacc 1701 actgggagta catccttagt gcgactagtt cagtgctgtg cgatcttcag 1751 ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt 1801 c