Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDLC26 segment S10, complete sequence.
ACC No: HM188518
Dated: 2013-01-31 | Length: 1801 | CRC: 1046062506
ID HM188518; SV 1; linear; genomic RNA; STD; VRL; 1801 BP. XX AC HM188518; XX DT 31-JAN-2013 (Rel. 115, Created) DT 31-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDLC26 segment S10, complete DE sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1801 RA Zhu Q.; RT "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in RT China"; RL Unpublished. XX RN [2] RP 1-1801 RA Zhu Q.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .1801 FT /organism="Rice black streaked dwarf virus" FT /segment="S10" FT /host="maize" FT /isolate="SDLC26" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="20-Jul-2008" FT /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca, FT rev_name: P2, rev_seq: gacaatagctgaatttcccccta" FT /db_xref="taxon:10990" FT 5'UTR 1. .21 FT CDS 22. .1698 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="ADI33233.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQDEHQ FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSILDADK FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR" XX SQ Sequence 1801 BP; 576 A; 328 C; 323 G; 574 T; 0 other; hm188518 Length: 1801 31-JAN-2013 Type: N Check: 5534 .. 1 aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc 51 cgatcttatc cataatggtg taccccagag actttccgat acaataattt 101 tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt 151 catgaactaa acattgtcaa atcgccccac gttgcatctt cccaaactac 201 tgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac 251 tacaaaccgt agaaactagc actttgccca acattacaca acttaaagac 301 catattcgta gcttttttca agatgaacac caacctattt ttcagaccct 351 aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac 401 taagcttatt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta 451 caaattgaga ccctaactga aggaaacatt actttgaaac ccttttctgc 501 tgatggttta gaagtcattc tcgatgatag ttatattggt atagttggta 551 aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa 601 gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg 651 tactggtaaa ttaagaattg atggtggtta cgattttaat tgtcctgcaa 701 gcactactga tgttacacat tatggtggtt atgaccaatt ttcacgtcaa 751 atgttcgaac gtttgaatct attttataac attagcctta gtataattcc 801 cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa ctaagtattt 851 tagatgcaga taaatcttta ctcgaacaaa cttggagcgc ggtagcgtca 901 tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga 951 tgaatatgaa ttgaccagtt tgtccacttt gcgcactaat tacgatggca 1001 cctctgcttc tagtcctttt acagataaga aattcattga ttggtacatt 1051 aagacttttt ctaagactga gaaaggatcg tcgttgcgtc gaaacgaatt 1101 agaagagaaa agtgccacta gtacttcaac tacagtaaag aaggttaaaa 1151 ttcatttctc cgttcaatat tttgatgaat ttaaagttaa tggacatgaa 1201 aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta 1251 tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt 1301 tggctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt 1351 catttagcac ccgtaattct gaagaagtat aatttaacta ttgatgacat 1401 tatcaacttt attgataaag gaccttctta tttagctaaa ttagacaaga 1451 ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct 1501 aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa 1551 ctcagtaatc atcagtagag cgaacaattt gttgaaatct gatagggaca 1601 ggctattaaa gaaggcactt tccgccaacg tttcttcttc caacacatct 1651 agtcatgaac atgtacagaa gatagtatta aacaaagtga caagatgacc 1701 actgggagta catccttagt gcgactagtt cagtgctgtg cgatcttcag 1751 ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt 1801 c