Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDJNi1 segment S10, complete sequence.
ACC No: HM188539
Dated: 2013-01-31 | Length: 1801 | CRC: 1984821419
ID HM188539; SV 1; linear; genomic RNA; STD; VRL; 1801 BP. XX AC HM188539; XX DT 31-JAN-2013 (Rel. 115, Created) DT 31-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDJNi1 segment S10, complete DE sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1801 RA Zhu Q.; RT "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in RT China"; RL Unpublished. XX RN [2] RP 1-1801 RA Zhu Q.; RT ; RL Submitted (04-MAY-2010) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .1801 FT /organism="Rice black streaked dwarf virus" FT /segment="S10" FT /host="maize" FT /isolate="SDJNi1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="20-Jul-2008" FT /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca, FT rev_name: P2, rev_seq: gacaatagctgaatttcccccta" FT /db_xref="taxon:10990" FT 5'UTR 1. .21 FT CDS 22. .1698 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="ADI33254.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE FT LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ FT THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID FT DIINFIEKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR" XX SQ Sequence 1801 BP; 573 A; 331 C; 330 G; 567 T; 0 other; hm188539 Length: 1801 31-JAN-2013 Type: N Check: 184 .. 1 aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc 51 cgatcttatc cataatggtg taccccagag actttccgat acaataattt 101 tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt 151 catgaattaa acattgtcaa atcgccccac gttgcatctt cccaaactac 201 cgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac 251 tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac 301 catattcgta gcttctttca aaatgaacac caacctattt tccagaccct 351 aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac 401 taagcttatt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta 451 caaattgaga ccctaactga aggaaacatt actttgaagc ctttttccgc 501 tgatggtttg gaagtcattc tcgatgatag ttatattgga atagttggta 551 aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa 601 gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg 651 tactggtaaa ttaagaattg atggtggtta cgattttaat tgtcctgcaa 701 gcactacgga tgttacacat tacggtggtt atgaccaatt ttcacgtcaa 751 atgttcgaac gtttgaatct attttataat attagcctta gcataatccc 801 cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa ctaagtgttt 851 tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca 901 tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga 951 tgaatatgag ttgaccagtt tgtccacgtt gcgcactaat tacgatggca 1001 cttctgcttc tagtcctttc acagataaga aattcattga ttggtacatt 1051 aagacttttt ctaaaactga gaaaggatcg tcgttgcgtc gaaacgaatt 1101 agaagagaaa agtgccacta gtacttcaac tacagtaaag aaggttaaaa 1151 ttcatttctc cgttcaatat tttgatgaat ttaaagttaa cggacatgaa 1201 aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta 1251 tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt 1301 tggctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt 1351 catttagcac ccgtaattct gaagaagtat aacttgacta ttgatgatat 1401 tatcaacttc attgagaaag gaccttctta tttagctaaa ttagacaaga 1451 ttgatgattg gtctttaatt tcaaagctta tcattactag cgttttacct 1501 aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa 1551 ctcagtaatt atcagtagag cgaacaattt gttgaaatct gatagggata 1601 ggctattaaa gaaggcactt tccgccaacg tttcttcttc taacacatct 1651 agtcatgaac atgtacagaa gatagtatta aacaaagtga caagatgacc 1701 actgggagta catccttagt gcgactagtt cagtgctgtg cgatcttcag 1751 ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt 1801 c