Sequence of DPV Tobacco rattle virus

Tobacco rattle virus RNA 2 variant AL3`AL-d coat protein and 16K-like protein genes, complete cds.

ACC No: HM195284

Dated: 2011-03-23 | Length: 1824 | CRC: -1550581285

                
ID   HM195284; SV 1; linear; genomic RNA; STD; VRL; 1824 BP.
XX
AC   HM195284;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Tobacco rattle virus RNA 2 variant AL3`AL-d coat protein and 16K-like
DE   protein genes, complete cds.
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KW   .
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OS   Tobacco rattle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC   Tobravirus.
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RN   [1]
RP   1-1824
RX   PUBMED; 21169212.
RA   Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.;
RT   "Deletions and recombinations with the RNA1 3' ends of different
RT   tobraviruses have created a multitude of tobacco rattle virus TCM-related
RT   RNA2 species in Alstroemeria and tulip";
RL   J. Gen. Virol. 92(PT 4):988-996(2011).
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RN   [2]
RP   1-1824
RA   Koenig R.;
RT   ;
RL   Submitted (03-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL   Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL   D38104, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1824
FT                   /organism="Tobacco rattle virus"
FT                   /segment="2"
FT                   /host="Alstroemeria"
FT                   /strain="AL"
FT                   /mol_type="genomic RNA"
FT                   /note="RNA 2 variant AL3`AL-d"
FT                   /db_xref="taxon:12295"
FT   CDS             524. .1135
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKZ0"
FT                   /protein_id="ADU05342.1"
FT                   /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR
FT                   DMIPGIVEDLSTEIPVDENTRVPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN
FT                   PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS
FT                   RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT"
FT   CDS             1178. .1588
FT                   /codon_start=1
FT                   /product="16K-like protein"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKY7"
FT                   /protein_id="ADU05343.1"
FT                   /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN
FT                   NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH
FT                   NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF"
XX
SQ   Sequence 1824 BP; 515 A; 301 C; 455 G; 553 T; 0 other;

hm195284 Length: 1824  23-MAR-2011  Type: N  Check: 6088  ..

       1  tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca
      51  agttggagaa cgcggtagaa cgtacttatc cgatacagcc tttatccctt
     101  tgttgagagg tttttctcaa ctgcaccgaa attctggatt tagttggtcg
     151  ctagaagact gaaggaatgt aggtgtattt ttagatagtt aataagtatc
     201  ttctcaaata ccataaacct gagacgcatc gcttgcgaaa gtagcattaa
     251  aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt
     301  cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct
     351  gttcggggtt tcacactatc ttaagagaaa gtgttaaaat agtgagaata
     401  ttctcactat gagcataatt atactggtta tcctctcgct gatagagact
     451  atcattctta aaatcacttt gaaaggtagt cttgttgata cacaggttgc
     501  tttatcactt gcactactta cttatggcag gtagttatgg ggaaacgttc
     551  gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa
     601  ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg
     651  cagacagaga tatgatccct ggaattgttg aggatctgag tacggaaata
     701  ccagttgatg aaaacacgag ggttcctagt gggaaagtgt atcaccttct
     751  gaccaaggaa atgttgatgg cgatcgaagc tatccatgcg gcttcgtcgt
     801  tcaaaagaag agccgaggag aaaaataatg tcaatccgag acagagattt
     851  gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag
     901  acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga
     951  atagtaaatt agatgacgcc agtacggcct ttcataagag tttagctact
    1001  cttaagggaa gtcgtccaaa ggcggttgtc cagcgcactt tcgaaaaaga
    1051  gtatagtttg aggtggacgg ctgctgctcc ggtcgctgct gctggtggaa
    1101  caccaccagg tggaggtcgt ggacctggaa cctagtttga atactcgtct
    1151  taatgcataa agaaatttat tgtcactatg acgtgtgtac tcaagggttg
    1201  tgtgaatgaa gtcactgttc ttggtcacga gacgtgttgt attggtcatg
    1251  ctaacaagtt gcgaaagcaa gttgctgaca tggttggtgt cacgcgtagg
    1301  tgtgcggaaa ataattgtgg atggtttgtc tgtgttgtta tcaatgattt
    1351  tacttttgat gtgtataatt gttgtggccg tagtcacctt gaaaagtgtc
    1401  gtaagcgtgt cgaagcgaga aatcgagaag tctggaaaca gattcaacga
    1451  gctcggaaag atacgtttgc tacagctaaa aagtctcata attcgaaatc
    1501  ccaaaaaagg gagagagaat ttgggacacc aaaaagattt ttaagagatg
    1551  atattccgtt tggaattgat caattgtttg ctttttgatt ttgtattaaa
    1601  ttgttatctg tttctgtgta tagactgttt gagattggcg cttgaccgac
    1651  tcattgtctt accatagggg aacggacttt gtttgtgttg ttattttatt
    1701  tgtattttat aaaaattctc agtgatctga aaaggcttta ttgccaagag
    1751  attgctgggg ggtgagtaag tacttttaaa gtgatgatgg ttacaaaggc
    1801  aaaaggggta aaacccctcg ccta