Sequence of DPV Tobacco rattle virus
Tobacco rattle virus RNA 2 variant AL3`AL-d coat protein and 16K-like protein genes, complete cds.
ACC No: HM195284
Dated: 2011-03-23 | Length: 1824 | CRC: -1550581285
ID HM195284; SV 1; linear; genomic RNA; STD; VRL; 1824 BP. XX AC HM195284; XX DT 29-DEC-2010 (Rel. 107, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco rattle virus RNA 2 variant AL3`AL-d coat protein and 16K-like DE protein genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; OC Tobravirus. XX RN [1] RP 1-1824 RX PUBMED; 21169212. RA Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.; RT "Deletions and recombinations with the RNA1 3' ends of different RT tobraviruses have created a multitude of tobacco rattle virus TCM-related RT RNA2 species in Alstroemeria and tulip"; RL J. Gen. Virol. 92(PT 4):988-996(2011). XX RN [2] RP 1-1824 RA Koenig R.; RT ; RL Submitted (03-MAY-2010) to the EMBL/GenBank/DDBJ databases. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX FH Key Location/Qualifiers FH FT source 1. .1824 FT /organism="Tobacco rattle virus" FT /segment="2" FT /host="Alstroemeria" FT /strain="AL" FT /mol_type="genomic RNA" FT /note="RNA 2 variant AL3`AL-d" FT /db_xref="taxon:12295" FT CDS 524. .1135 FT /codon_start=1 FT /product="coat protein" FT /db_xref="UniProtKB/TrEMBL:E7CKZ0" FT /protein_id="ADU05342.1" FT /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR FT DMIPGIVEDLSTEIPVDENTRVPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN FT PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT" FT CDS 1178. .1588 FT /codon_start=1 FT /product="16K-like protein" FT /db_xref="UniProtKB/TrEMBL:E7CKY7" FT /protein_id="ADU05343.1" FT /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH FT NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF" XX SQ Sequence 1824 BP; 515 A; 301 C; 455 G; 553 T; 0 other; hm195284 Length: 1824 23-MAR-2011 Type: N Check: 6088 .. 1 tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca 51 agttggagaa cgcggtagaa cgtacttatc cgatacagcc tttatccctt 101 tgttgagagg tttttctcaa ctgcaccgaa attctggatt tagttggtcg 151 ctagaagact gaaggaatgt aggtgtattt ttagatagtt aataagtatc 201 ttctcaaata ccataaacct gagacgcatc gcttgcgaaa gtagcattaa 251 aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt 301 cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct 351 gttcggggtt tcacactatc ttaagagaaa gtgttaaaat agtgagaata 401 ttctcactat gagcataatt atactggtta tcctctcgct gatagagact 451 atcattctta aaatcacttt gaaaggtagt cttgttgata cacaggttgc 501 tttatcactt gcactactta cttatggcag gtagttatgg ggaaacgttc 551 gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa 601 ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg 651 cagacagaga tatgatccct ggaattgttg aggatctgag tacggaaata 701 ccagttgatg aaaacacgag ggttcctagt gggaaagtgt atcaccttct 751 gaccaaggaa atgttgatgg cgatcgaagc tatccatgcg gcttcgtcgt 801 tcaaaagaag agccgaggag aaaaataatg tcaatccgag acagagattt 851 gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag 901 acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga 951 atagtaaatt agatgacgcc agtacggcct ttcataagag tttagctact 1001 cttaagggaa gtcgtccaaa ggcggttgtc cagcgcactt tcgaaaaaga 1051 gtatagtttg aggtggacgg ctgctgctcc ggtcgctgct gctggtggaa 1101 caccaccagg tggaggtcgt ggacctggaa cctagtttga atactcgtct 1151 taatgcataa agaaatttat tgtcactatg acgtgtgtac tcaagggttg 1201 tgtgaatgaa gtcactgttc ttggtcacga gacgtgttgt attggtcatg 1251 ctaacaagtt gcgaaagcaa gttgctgaca tggttggtgt cacgcgtagg 1301 tgtgcggaaa ataattgtgg atggtttgtc tgtgttgtta tcaatgattt 1351 tacttttgat gtgtataatt gttgtggccg tagtcacctt gaaaagtgtc 1401 gtaagcgtgt cgaagcgaga aatcgagaag tctggaaaca gattcaacga 1451 gctcggaaag atacgtttgc tacagctaaa aagtctcata attcgaaatc 1501 ccaaaaaagg gagagagaat ttgggacacc aaaaagattt ttaagagatg 1551 atattccgtt tggaattgat caattgtttg ctttttgatt ttgtattaaa 1601 ttgttatctg tttctgtgta tagactgttt gagattggcg cttgaccgac 1651 tcattgtctt accatagggg aacggacttt gtttgtgttg ttattttatt 1701 tgtattttat aaaaattctc agtgatctga aaaggcttta ttgccaagag 1751 attgctgggg ggtgagtaag tacttttaaa gtgatgatgg ttacaaaggc 1801 aaaaggggta aaacccctcg ccta