Sequence of DPV Tomato chino La Paz virus

Tomato chino La Paz virus isolate pepper segment A, complete sequence.

ACC No: HM459852

Dated: 2010-11-04 | Length: 2609 | CRC: -1952202335

                
ID   HM459852; SV 1; circular; genomic DNA; STD; VRL; 2609 BP.
XX
AC   HM459852;
XX
DT   04-NOV-2010 (Rel. 106, Created)
DT   04-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Tomato chino La Paz virus isolate pepper segment A, complete sequence.
XX
KW   .
XX
OS   Tomato chino La Paz virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2609
RA   Cardenas-Conejo Y., Arguello-Astorga G., Poghosyan A.,
RA   Hernandez-Gonzalez J., Lebsky V., Holguin J., Medina-Hernandez D., Vega S.;
RT   "First Report of Tomato yellow leaf curl virus Co-infecting Pepper with
RT   Tomato chino La Paz virus in Baja California Sur, Mexico";
RL   Plant Dis. 94(10):1266-1266(2010).
XX
RN   [2]
RP   1-2609
RA   Cardenas-Conejo Y., Arguello-Astorga G.R., Hernandez-Gonzalez J.,
RA   Lebsky V., Holguin J., Pena S., Poghosyan A.;
RT   ;
RL   Submitted (06-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Biology of Plants, Instituto Potosino de Investigacion Cientifica
RL   y Tecnologica (IPICyT), Camino a la Presa San Jose 2055. Col. Lomas 4
RL   Seccion, San Luis Potosi, San Luis Potosi 78216, Mexico
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2609
FT                   /organism="Tomato chino La Paz virus"
FT                   /segment="A"
FT                   /host="Capsicum annuum L."
FT                   /isolate="pepper"
FT                   /mol_type="genomic DNA"
FT                   /country="Mexico:Baja California Sur"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:240492"
FT   gene            182. .937
FT                   /gene="AV1"
FT   CDS             182. .937
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="CP; capsid protein; encapsulates the viral genome"
FT                   /protein_id="ADP21186.1"
FT                   /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY
FT                   RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV
FT                   KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL
FT                   MLYMACTHASNPVYATLKIRIYFYDSVLN"
FT   gene            complement(934. .1332)
FT                   /gene="AC3"
FT   CDS             complement(934. .1332)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="rep-interacting protein; enhances function of Rep
FT                   protein; AL3; REn"
FT                   /protein_id="ADP21189.1"
FT                   /translation="MDSRTGESITADQAENSVFIWEVPNPLYFTIIDVEDPIYTNTRIY
FT                   HIQIRFNHNLRKALNLHKAYLNYQIWTTSVRASGTNYLSRFKYLVLLYLDRLGVICINN
FT                   VIRAVRFATDKSYVNHVLENHSIKFKIY"
FT   gene            complement(1079. .1465)
FT                   /gene="AC2"
FT   CDS             complement(1079. .1465)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein"
FT                   /note="TrAP; transcription activator; activation of late
FT                   genes; silencing-suppressor; AL2"
FT                   /protein_id="ADP21188.1"
FT                   /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH
FT                   GFSHRGEHHCGSGREFRFYLGGSKSPLFHDNRCRGPNLHEHQDIPHPNTVQPQPEEGVE
FT                   STQSIPQLPNLDDISSSFWDELLK"
FT   gene            complement(1422. .2465)
FT                   /gene="AC1"
FT   CDS             complement(1422. .2465)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication initiator protein"
FT                   /note="Rep; rolling-circle replication protein; initiator
FT                   of virus replication via a RC mechanism"
FT                   /protein_id="ADP21187.1"
FT                   /translation="MPLAPKKFLINSKNYFLTYPHCSLSKEETLEQLLRLNTPTNKKYI
FT                   KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY
FT                   VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY
FT                   HNLSSNIDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGAAARPERPISIIIE
FT                   GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGA
FT                   QKDWQSNCKYGKPVQIKGGIPTIVLCNPGEGASYKDFLEKEENASLKAWTLHNAKFIFL
FT                   NSTLYQT"
FT   gene            complement(2048. .2305)
FT                   /gene="AC4"
FT   CDS             complement(2048. .2305)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /protein_id="ADP21190.1"
FT                   /translation="MGNIISTCLSNSKANSKHKIADSSTWYPQPGQHISIRTFRELNQA
FT                   PTSSPMSTRMEIQSNGENSRSTADLLEEVSKQLTTLPQRP"
XX
SQ   Sequence 2609 BP; 647 A; 532 C; 600 G; 830 T; 0 other;

hm459852 Length: 2609  04-NOV-2010  Type: N  Check: 3834  ..

       1  accggatggc cgcgcttttt tgacccggcc catttcctga aatttcgtag
      51  aaatttacta gataaagtta gccaatcagc gcacgcgtgt gcggtctaat
     101  tattaataac ttggcgacta agtcgttttt ggtctataaa tttgtcgtta
     151  tgtgtgtggt ccagatatac atattttgaa aatgcctaag cgggatgccc
     201  catggcgttt aatgtcgggt acccctaagg tgagtcgctc ctctaattat
     251  gtccctcctg atggattggg ccgtaaattt gataaatctt ctgcttgggc
     301  caacaggccc atgtacagaa agcccaggat atatcggacc gtaaggtctg
     351  ccgatgttcc tcgaggctgt gaagggcctt gcaagattca gtcgtttgag
     401  cagcgtcacg atatctctca cacagggaag gtgatgtgta tctccgatgt
     451  tactagaggc aatggcatta cccatcgggt tggtaaacgt ttctgcgtta
     501  agtccgtgta tatattaggg aaggtttgga tggacgataa catcaagctg
     551  aagaaccaca ctaacagcgt tatgttctgg ttagttaggg ataggaggcc
     601  cagcggaacg gctatggatt ttggtcacct ctttaacatg tttgacaatg
     651  agcctagtac cgccactgtg aagaacgatc ttcgagatcg tttccaagtg
     701  ctgcacaggt ttcatgccaa ggttactggt ggtcagtatg ctagtaatga
     751  gcagacgttg gtgaagcgtt tttggcgggt gaatcatcgt gtaacatata
     801  ataatcagga ggcggctcgg tatgagaatc ataccgagaa cgctttaatg
     851  ttgtatatgg catgtactca tgcctctaac cctgtgtatg ctactcttaa
     901  gatccggatc tacttttatg attcggtatt aaattaataa attttgaatt
     951  ttattgaatg attttcaagt acatgattta catacgattt atctgttgcg
    1001  aagcgaacag ctctaattac attattaata caaataacgc ctaacctatc
    1051  taaatacaat aagactaaat atttaaacct acttaagtaa ttcgtcccag
    1101  aagctcgaac tgatgtcgtc cagatttggt agttgaggta tgctttgtgt
    1151  agattcaacg ccttcctcag gttgtggttg aaccgtattt ggatgtggta
    1201  tatcctggtg ttcgtgtaga ttgggtcctc tacatcgatt atcgtgaaat
    1251  agaggggatt tggaacctcc cagataaaaa cggaattctc tgcctgatcc
    1301  gcagtgatgc tctcccctgt gcgagaatcc atggttggca caatctatat
    1351  gctggtagaa tgagcagcca cagtttaggt ctatcctctt acgacgaatc
    1401  ctcgattttg caatcttgtg tttaggtttg atagagggtg gagttgagga
    1451  agatgaattt tgcattgtgg agtgtccagg ctttgagtga tgcgttttcc
    1501  tctttctcga ggaagtcttt atagctggct ccctctcctg gattgcagag
    1551  cacgattgtt ggtatcccac ctttaatttg aactggcttt ccgtatttgc
    1601  agttggactg ccagtccttt tgggccccaa tcagctcttt ccaatgtttc
    1651  atctttaaat attgtggagt tacgtcatca atgacgttgt actccacatc
    1701  atttgagtaa accctaggat tgaaatccaa gtgtccactc aaataattat
    1751  gtggtcctaa agcacgagcc cacattgtct ttcctgtcct cgaatcaccc
    1801  tcgattatta tactaatagg tctctccggc cgcgcagcgg cacccctacc
    1851  aaaataatca tcagcccact cttgcatctc gtccggaacg ttcgtgaagg
    1901  aggagagtgg aaacggagga acccatggtt ccggagcctt agcgaatatc
    1951  ctgtctatgt tgctagacag gttgtgatat tgaaaaagaa actctttggg
    2001  gagcttctct ttaataattc gcattgcctc ctccttcgat gaggcattta
    2051  gggcctctgc ggcagcgtcg ttagctgttt gctgacctcc tctagcagat
    2101  ctgccgtcga tctggaattc tccccattcg attgtatctc catccttgtc
    2151  gacataggac ttgacgtcgg tgcttgattt agctccctga acgttcggat
    2201  ggaaatgtgt tgacctggtt gaggatacca ggtcgaagaa tcggcaattt
    2251  tgtgttttga atttgccttc gaattggata agcacgtgga gatgatattc
    2301  cccatcttcg tgtaattctc ttgcaatttt gatatatttt ttatttgtcg
    2351  gagtgttcag ccgtaatagt tgctctaggg tttcttcttt cgataaagaa
    2401  cagtggggat atgttagaaa ataatttttt gaatttataa gaaatttctt
    2451  tggagctaag ggcatttttt gtaaatattt taggtatacc caattgagct
    2501  ctcttcaaaa ctctgaggaa ttgggtatat tgggtcctta tttatactag
    2551  aaggtcctat agaactttta atcgcatccg ctcaccgtgg cggccatccg
    2601  aataatatt