Sequence of DPV Tomato chino La Paz virus
Tomato chino La Paz virus isolate pepper segment A, complete sequence.
ACC No: HM459852
Dated: 2010-11-04 | Length: 2609 | CRC: -1952202335
ID HM459852; SV 1; circular; genomic DNA; STD; VRL; 2609 BP. XX AC HM459852; XX DT 04-NOV-2010 (Rel. 106, Created) DT 04-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Tomato chino La Paz virus isolate pepper segment A, complete sequence. XX KW . XX OS Tomato chino La Paz virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2609 RA Cardenas-Conejo Y., Arguello-Astorga G., Poghosyan A., RA Hernandez-Gonzalez J., Lebsky V., Holguin J., Medina-Hernandez D., Vega S.; RT "First Report of Tomato yellow leaf curl virus Co-infecting Pepper with RT Tomato chino La Paz virus in Baja California Sur, Mexico"; RL Plant Dis. 94(10):1266-1266(2010). XX RN [2] RP 1-2609 RA Cardenas-Conejo Y., Arguello-Astorga G.R., Hernandez-Gonzalez J., RA Lebsky V., Holguin J., Pena S., Poghosyan A.; RT ; RL Submitted (06-JUN-2010) to the EMBL/GenBank/DDBJ databases. RL Molecular Biology of Plants, Instituto Potosino de Investigacion Cientifica RL y Tecnologica (IPICyT), Camino a la Presa San Jose 2055. Col. Lomas 4 RL Seccion, San Luis Potosi, San Luis Potosi 78216, Mexico XX FH Key Location/Qualifiers FH FT source 1. .2609 FT /organism="Tomato chino La Paz virus" FT /segment="A" FT /host="Capsicum annuum L." FT /isolate="pepper" FT /mol_type="genomic DNA" FT /country="Mexico:Baja California Sur" FT /collection_date="2008" FT /db_xref="taxon:240492" FT gene 182. .937 FT /gene="AV1" FT CDS 182. .937 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP; capsid protein; encapsulates the viral genome" FT /protein_id="ADP21186.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(934. .1332) FT /gene="AC3" FT CDS complement(934. .1332) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; enhances function of Rep FT protein; AL3; REn" FT /protein_id="ADP21189.1" FT /translation="MDSRTGESITADQAENSVFIWEVPNPLYFTIIDVEDPIYTNTRIY FT HIQIRFNHNLRKALNLHKAYLNYQIWTTSVRASGTNYLSRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENHSIKFKIY" FT gene complement(1079. .1465) FT /gene="AC2" FT CDS complement(1079. .1465) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; transcription activator; activation of late FT genes; silencing-suppressor; AL2" FT /protein_id="ADP21188.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFSHRGEHHCGSGREFRFYLGGSKSPLFHDNRCRGPNLHEHQDIPHPNTVQPQPEEGVE FT STQSIPQLPNLDDISSSFWDELLK" FT gene complement(1422. .2465) FT /gene="AC1" FT CDS complement(1422. .2465) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep; rolling-circle replication protein; initiator FT of virus replication via a RC mechanism" FT /protein_id="ADP21187.1" FT /translation="MPLAPKKFLINSKNYFLTYPHCSLSKEETLEQLLRLNTPTNKKYI FT KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY FT HNLSSNIDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPTIVLCNPGEGASYKDFLEKEENASLKAWTLHNAKFIFL FT NSTLYQT" FT gene complement(2048. .2305) FT /gene="AC4" FT CDS complement(2048. .2305) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /protein_id="ADP21190.1" FT /translation="MGNIISTCLSNSKANSKHKIADSSTWYPQPGQHISIRTFRELNQA FT PTSSPMSTRMEIQSNGENSRSTADLLEEVSKQLTTLPQRP" XX SQ Sequence 2609 BP; 647 A; 532 C; 600 G; 830 T; 0 other; hm459852 Length: 2609 04-NOV-2010 Type: N Check: 3834 .. 1 accggatggc cgcgcttttt tgacccggcc catttcctga aatttcgtag 51 aaatttacta gataaagtta gccaatcagc gcacgcgtgt gcggtctaat 101 tattaataac ttggcgacta agtcgttttt ggtctataaa tttgtcgtta 151 tgtgtgtggt ccagatatac atattttgaa aatgcctaag cgggatgccc 201 catggcgttt aatgtcgggt acccctaagg tgagtcgctc ctctaattat 251 gtccctcctg atggattggg ccgtaaattt gataaatctt ctgcttgggc 301 caacaggccc atgtacagaa agcccaggat atatcggacc gtaaggtctg 351 ccgatgttcc tcgaggctgt gaagggcctt gcaagattca gtcgtttgag 401 cagcgtcacg atatctctca cacagggaag gtgatgtgta tctccgatgt 451 tactagaggc aatggcatta cccatcgggt tggtaaacgt ttctgcgtta 501 agtccgtgta tatattaggg aaggtttgga tggacgataa catcaagctg 551 aagaaccaca ctaacagcgt tatgttctgg ttagttaggg ataggaggcc 601 cagcggaacg gctatggatt ttggtcacct ctttaacatg tttgacaatg 651 agcctagtac cgccactgtg aagaacgatc ttcgagatcg tttccaagtg 701 ctgcacaggt ttcatgccaa ggttactggt ggtcagtatg ctagtaatga 751 gcagacgttg gtgaagcgtt tttggcgggt gaatcatcgt gtaacatata 801 ataatcagga ggcggctcgg tatgagaatc ataccgagaa cgctttaatg 851 ttgtatatgg catgtactca tgcctctaac cctgtgtatg ctactcttaa 901 gatccggatc tacttttatg attcggtatt aaattaataa attttgaatt 951 ttattgaatg attttcaagt acatgattta catacgattt atctgttgcg 1001 aagcgaacag ctctaattac attattaata caaataacgc ctaacctatc 1051 taaatacaat aagactaaat atttaaacct acttaagtaa ttcgtcccag 1101 aagctcgaac tgatgtcgtc cagatttggt agttgaggta tgctttgtgt 1151 agattcaacg ccttcctcag gttgtggttg aaccgtattt ggatgtggta 1201 tatcctggtg ttcgtgtaga ttgggtcctc tacatcgatt atcgtgaaat 1251 agaggggatt tggaacctcc cagataaaaa cggaattctc tgcctgatcc 1301 gcagtgatgc tctcccctgt gcgagaatcc atggttggca caatctatat 1351 gctggtagaa tgagcagcca cagtttaggt ctatcctctt acgacgaatc 1401 ctcgattttg caatcttgtg tttaggtttg atagagggtg gagttgagga 1451 agatgaattt tgcattgtgg agtgtccagg ctttgagtga tgcgttttcc 1501 tctttctcga ggaagtcttt atagctggct ccctctcctg gattgcagag 1551 cacgattgtt ggtatcccac ctttaatttg aactggcttt ccgtatttgc 1601 agttggactg ccagtccttt tgggccccaa tcagctcttt ccaatgtttc 1651 atctttaaat attgtggagt tacgtcatca atgacgttgt actccacatc 1701 atttgagtaa accctaggat tgaaatccaa gtgtccactc aaataattat 1751 gtggtcctaa agcacgagcc cacattgtct ttcctgtcct cgaatcaccc 1801 tcgattatta tactaatagg tctctccggc cgcgcagcgg cacccctacc 1851 aaaataatca tcagcccact cttgcatctc gtccggaacg ttcgtgaagg 1901 aggagagtgg aaacggagga acccatggtt ccggagcctt agcgaatatc 1951 ctgtctatgt tgctagacag gttgtgatat tgaaaaagaa actctttggg 2001 gagcttctct ttaataattc gcattgcctc ctccttcgat gaggcattta 2051 gggcctctgc ggcagcgtcg ttagctgttt gctgacctcc tctagcagat 2101 ctgccgtcga tctggaattc tccccattcg attgtatctc catccttgtc 2151 gacataggac ttgacgtcgg tgcttgattt agctccctga acgttcggat 2201 ggaaatgtgt tgacctggtt gaggatacca ggtcgaagaa tcggcaattt 2251 tgtgttttga atttgccttc gaattggata agcacgtgga gatgatattc 2301 cccatcttcg tgtaattctc ttgcaatttt gatatatttt ttatttgtcg 2351 gagtgttcag ccgtaatagt tgctctaggg tttcttcttt cgataaagaa 2401 cagtggggat atgttagaaa ataatttttt gaatttataa gaaatttctt 2451 tggagctaag ggcatttttt gtaaatattt taggtatacc caattgagct 2501 ctcttcaaaa ctctgaggaa ttgggtatat tgggtcctta tttatactag 2551 aaggtcctat agaactttta atcgcatccg ctcaccgtgg cggccatccg 2601 aataatatt