Sequence of DPV Cotton leaf curl Burewala virus

Cotton leaf curl Burewala virus clone lko new segment A, complete sequence.

ACC No: HM461867

Dated: 2010-10-21 | Length: 2761 | CRC: -666366785

                
ID   HM461867; SV 1; circular; genomic DNA; STD; VRL; 2761 BP.
XX
AC   HM461867;
XX
DT   21-OCT-2010 (Rel. 106, Created)
DT   21-OCT-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Cotton leaf curl Burewala virus clone lko new segment A, complete sequence.
XX
KW   .
XX
OS   Cotton leaf curl Burewala virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2761
RA   Kumar J., Kumar A.;
RT   "Molecular analysis of cotton leaf curl Burewala virus isolated from
RT   northern India";
RL   Unpublished.
XX
RN   [2]
RP   1-2761
RA   Kumar J., Kumar A.;
RT   ;
RL   Submitted (08-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology Lab, National Botanical Research Institute, Rana Pratap
RL   Marg, Lucknow, Uttar Pradesh 226001, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2761
FT                   /organism="Cotton leaf curl Burewala virus"
FT                   /segment="A"
FT                   /host="cotton"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /isolation_source="leaf tissue"
FT                   /clone="lko new"
FT                   /db_xref="taxon:620894"
FT   gene            131. .487
FT                   /gene="AV2"
FT   CDS             131. .487
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="movement/precoat protein"
FT                   /protein_id="ADO41110.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT                   ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT                   KAQDILDVQKSRCS"
FT   gene            291. .1064
FT                   /gene="AV1"
FT   CDS             291. .1064
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="ADO41111.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRIYWMYRSPDVPRGCEGPCKVQSFEFYTSYQHNRYSNVCSDVTRGTGLTQY
FT                   KLVRDFAVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNE
FT                   PSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYEN
FT                   HSENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1061. .1465)
FT                   /gene="AC3"
FT   CDS             complement(1061. .1465)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="ADO41112.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT                   LTIRIQFNHNLRKALGIHKCFIAFRIWMTSHPPTGLFLRVFRTQVLKYLNNLGIVSINN
FT                   VVRAVDHVLWNVLQHVVFIDQSSSIKFNIY"
FT   gene            complement(1206. .1610)
FT                   /gene="AC2"
FT   CDS             complement(1206. .1610)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /protein_id="ADO41113.1"
FT                   /translation="MQSSSLSKDHCTQLPIIVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP
FT                   EESVGDTQMFHSFPNLDDLTPSDWSFLKGL"
FT   gene            complement(1507. .2598)
FT                   /gene="AC1"
FT   CDS             complement(1507. .2598)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /protein_id="ADO41114.1"
FT                   /translation="MAPPKRFKVQTKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT                   LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSVHFHPNIQGAKSSSDVKAYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVVQFH
FT                   NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAINNVVDAAARPLRPRSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMRAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT                   YSASNHSTAQGSEETQQEEESRS"
FT   gene            complement(2244. .2684)
FT                   /gene="AC4"
FT   CDS             complement(2244. .2684)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="regulatory protein"
FT                   /protein_id="ADO41115.1"
FT                   /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS
FT                   LIHSAHSPKRKHSPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS
FT                   STWYPQPGQYISIRTFRELNQAQMSRPTSTRTGTLSSGESFR"
XX
SQ   Sequence 2761 BP; 720 A; 545 C; 647 G; 849 T; 0 other;

hm461867 Length: 2761  21-OCT-2010  Type: N  Check: 7337  ..

       1  accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg
      51  gccaatcata tgacccgctc aaagcttaaa taattctccc gcttattata
     101  agtacttcgt tgctaagtat gcgtttgaaa atgtgggatc cactgttaaa
     151  tgagttcccc gacaccgttc acggttttag gtgtatgtta gcagttaaat
     201  atttgcagtt agtagagaaa acttactctc ctgatacatt gggttacgat
     251  ttgataaggg atttaatcct ggtaataagg gctaggaatt atgtcgaagc
     301  gaccagcaga tataatcatt tccacgcccg cttcgaaggt acgccgccgt
     351  ctcaacttcg acagcccata tgtgagccgt gctgctgccc ccattgtccg
     401  cgtcaccaaa gcaaaagcat gggcgaacag gcccatgaac agaaagccca
     451  ggatatattg gatgtacaga agtccagatg ttcctagagg atgtgaaggt
     501  ccatgtaagg ttcagtcgtt tgagttctac acatcatatc agcataatag
     551  gtatagtaat gtgtgtagtg atgttactcg tggtactggg ctgacccaat
     601  acaagttggt aagagatttt gctgttaagt ctgtttatgt gttgggtaag
     651  atctggatgg atgagaacat taagacgaag aatcacacga atagtgtgat
     701  gtttttcttg gttagagatc gtagacctgt tgataaacct caagattttg
     751  gagaggtatt taatatgttt gataatgagc ccagtacggc gactgtgaag
     801  aatgttcatc gtgataggta tcaagttctg cgcaaatggt atgcaactgt
     851  caccggtgga caatacgctt caaaggaaca agctctcgtg aagaaattta
     901  ttagagttaa taattatgtt gtgtataacc agcaggaagc tggcaagtat
     951  gagaatcatt ctgagaatgc tttaatgttg tatatggcgt gtactcacgc
    1001  ctctaaccca gtgtatgcta ccttgaagat acggatctac ttctatgatt
    1051  ccgtgacaaa ttaataaata ttgaatttta ttgaagatga ttggtctata
    1101  aatacaacat gttgtaatac attccataat acatgatcaa ctgctctaac
    1151  tacattatta atactgacaa ttcctaagtt atttaaatat ttaagcactt
    1201  gagtcctaaa gacccttaag aaaagaccag tcggagggtg tgaggtcatc
    1251  cagattcgga aagctatgaa acatttgtgt atccccaacg ctttcctcag
    1301  gttgtgattg aactggatcc tgatcgtgag tatatccata ttcgtcgtga
    1351  atggacggtt gacgtggctg atgatcttga aatagagggg atttggaact
    1401  tcccagatat atgcgccatt ccctgcttga gctgcagtga tgggttcccc
    1451  tgtgcgtgaa tccatggttg tggcagttga ttgacagata ataagaacac
    1501  ccgcattcaa gatctactct cctcctcctg ttgcgtctct tcgcttccct
    1551  gtgctgtact atgattggaa gctgagtaca gtggtccttc gagagtgatg
    1601  aagattgcat tttttaaggc ccaattcttt aatgctgtgt ttttttcctc
    1651  gttgaggaat tccttataac tgctgttcgg accaggattg cacaggaaga
    1701  ttgtcggtat cccgccttta atttgaactg gctttccgta ttttgtgttg
    1751  gactgccagt ctctttgggc ccgcatgaac tctttaaagt gtttgaggaa
    1801  atgcgggtcg acgtcatcaa tgacgttgta ccaggcgtcg ttactgtata
    1851  ctttgggact caggtccaga tgtccgcaca aatagttatg tggtcccaaa
    1901  gatctagccc acatcgtctt ccccgttcga ctatctccct caattactat
    1951  actccgaggt ctaaggggcc gcgcagcggc atcgacaacg ttattgatgg
    2001  cccaaacttc aagttcttct ggaacttgat cgaaagaaga aggagaaaag
    2051  ggagaaatat agggagccgg tggctcctga aagattctgt ctagatttgc
    2101  atttaaatta tgaaattgta ctacaaaatc tttaggagct agttccttaa
    2151  tgactctaag agcctctgac ttactgcctg cattaagtgc tgcggcgtaa
    2201  gcgtcgttgg ctgtctgctg tcctcctctt gctgatcttc catctatctg
    2251  aaactctccc cactcgagag tgtccccgtc cttgtcgatg taggccttga
    2301  catctgagct tgatttagct ccctgaatgt tcggatggaa atgtactgac
    2351  ctggttgggg ataccaggtc gaagaatctg ttatttgtgc agacgaattt
    2401  gccctcgaac tggatgagca catggagatg agggctccca tcttcgtgta
    2451  actctctgca gagtttgatg tattttttat tcgagggtgt gttgatggct
    2501  tgaatttggg agagtgcttc ctctttggtg agtgagcact gtggataagt
    2551  gatgaaataa tttttggttt gtactttaaa acgtttgggg ggagccattg
    2601  actttggtca attagagaca actgatgggc ttttactctg ggaattggag
    2651  actggataca atttatagtg tctccaaatg gcatattctg taaacaacta
    2701  gaagttcgtt tgaaattcaa attccccttt gggctccaaa agcggccatc
    2751  cgtataatat t