Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus isolate Hubei segment S5, complete sequence.
ACC No: HM585275
Dated: 2013-05-07 | Length: 3167 | CRC: -616200982
ID HM585275; SV 1; linear; genomic RNA; STD; VRL; 3167 BP.
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AC HM585275;
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DT 07-MAY-2013 (Rel. 116, Created)
DT 07-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Southern rice black-streaked dwarf virus isolate Hubei segment S5, complete
DE sequence.
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KW .
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OS Southern rice black-streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC unclassified Fijivirus.
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RN [1]
RP 1-3167
RA Zhang S., Wu Z., Wei T., Xie L.;
RT "The complete genome sequence of Hubei isolate of Southern rice
RT black-streaked dwarf virus, a new member of the genus Fijivirus";
RL Unpublished.
XX
RN [2]
RP 1-3167
RA Zhang S., Wu Z., Wei T., Zhuang J., Xiao D., Lin Q., Xie L.;
RT ;
RL Submitted (23-JUN-2010) to the INSDC.
RL Fujian Agriculture and Forestry University, Key Laboratory of Biopesticide
RL and Chemical Biology, Ministry of Education, Kingshan, Fuzhou, Fujian
RL 350000, P.R. China
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CC GenBank Accession Numbers HM585270-HM585279 represent sequences
CC from the 10 segments of Southern rice black-streaked dwarf virus.
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FH Key Location/Qualifiers
FH
FT source 1. .3167
FT /organism="Southern rice black-streaked dwarf virus"
FT /segment="S5"
FT /host="rice"
FT /isolate="Hubei"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:519497"
FT CDS 16. .2835
FT /codon_start=1
FT /product="S5-1"
FT /protein_id="AEI59018.1"
FT /translation="MTYSKVKMTTDPSEMSLKKVLFNPTNEIRILNHEQADNTLLTTLM
FT IIHDFEDTHTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL
FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI
FT SDETYYEYVSAMIIVFEVFLCVITVNSVYGGLIFSALNLMSGGHNYIPILGLLLHAIVQ
FT AVKIYLDKSAANQIEEKTTSYVDKVTNNDVKDVMIDDTMFIFVDKPKEPIFQNFDISLK
FT VHTHKSSAFQPFKTGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYSE
FT RHAIGVKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPPDFFTVDFNE
FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSVNFYDPIFECFFPN
FT HFIKIVKKDAITIDPTKVVTEDDMIHFGRLVERHEDLTYNKTTAYSILKFLNENCHSCG
FT CSEYFANFVSDYLTSIDVLNHMKDSKLSKVEYHLKQEYENLFKKTKRQELSKTPIAEHS
FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDENLEKLNVLSLYDLVV
FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY
FT LIPEWLGESLTVYEEKHEGARLFEKSSSFSTLSCIPATFLANHILIECLEKSSNKLISF
FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSRNKSFRSYLRSSR
FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN
FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR
FT AKLQPTTAR"
FT CDS 2459. .3076
FT /codon_start=1
FT /product="S5-2"
FT /protein_id="AEI59019.1"
FT /translation="MSMTRCPIVSPRNRTGCSHQKKCACLIISDHLEKWELTIATVNCH
FT MISRQEKSCTTIIPVRFDLEISDILSLENILDAKYVATITELALNFPCVNWDIKKQQLK
FT QFDPTQSLVKLEQNFNQLQRDDKLHFNCCYNYPTLHILNRILNVSKDVIPFLFDHNHNA
FT NNKTMFDLSSTLNNCRDMKVSERHNLLRTLLFGSTLGVILHV"
XX
SQ Sequence 3167 BP; 996 A; 634 C; 569 G; 968 T; 0 other;
hm585275 Length: 3167 07-MAY-2013 Type: N Check: 3679 ..
1 aagttttttt cactcatgac atattcgaaa gtgaagatga ccacagatcc
51 ttccgaaatg tctctgaaaa aagtgctttt caacccaacg aacgaaatcc
101 gaattctcaa ccacgaacaa gcagacaaca ctcttttgac cacactgatg
151 attattcacg actttgaaga cacccacact cgtgactcaa ttctgcctca
201 aattgtcaat gaagaaaaag ccgaattcga ccgaactatt gaatccattc
251 ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa
301 gaaaacgcga aattgggtaa tcctcttgct ccaaattaca aaaacgtcgt
351 gtctgtagaa acatgcattc caggtcttga aaaacttttt gttgatcgcg
401 aaagatggga actgtttacc cgtttgtatc ggctagatcg aaaaatgagt
451 caaaaatatc ctctagagaa gatgctaaaa ggcaatttcc ttaacatttc
501 catttccgac gaaacttatt atgagtacgt ttccgctatg atcatagttt
551 ttgaagtgtt tctttgtgtt ataactgtca acagtgttta cggtggcttg
601 atctttagtg ctttgaactt gatgagcggc ggacataact acattcctat
651 tcttggccta cttttacatg ctattgttca agctgtaaaa atttatttgg
701 ataaatcagc tgcgaatcaa attgaagaaa agactacttc ctacgtagac
751 aaagtgacaa acaacgacgt taaagacgtt atgattgatg acaccatgtt
801 tatttttgtt gataaaccga aagaaccaat attccaaaat ttcgacatca
851 gtctaaaagt tcatactcac aaatcatctg cttttcaacc ttttaaaacc
901 ggtttcaatg ctcttttaac taaaatcatt cgtattcaca aaatcaaagg
951 tgaaattctc aaagttggtt acattgatgg aatcagtcgt gacgaattga
1001 ttggcgcatc aggaaagaaa ctctcgtatt ctgaaagaca tgccattgga
1051 gttaagtatg atcaggaaac caagacattg ttcatcagtc accccattct
1101 acgagatgct tttgagcgtt tgaacaagct ttcactatta catgacaacc
1151 ttctgttgaa agacgatttc gctaacattc cgcctgattt tttcactgtt
1201 gattttaatg agccagattc tgtcagtgat tacgtagttc ccttcttgaa
1251 taatgctgat ttgaagtttt ccactcaaat gtcttacaac tggagaagca
1301 ttaacacgga aaaaagacct tactgcttct tgaaagaagg aactagcgtg
1351 aacttttacg atccaatttt tgaatgcttt tttccaaacc atttcatcaa
1401 aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa gttgtaactg
1451 aagatgacat gatccatttt ggacggttgg ttgaaagaca tgaagatttg
1501 acgtacaaca agactactgc ttattccatc ttgaaatttt tgaatgaaaa
1551 ttgccacagt tgtggttgtt ctgaatattt cgccaatttc gtttctgatt
1601 acttaacatc aatcgacgtt cttaatcaca tgaaggattc aaaattatca
1651 aaggtcgaat atcatctcaa gcaggaatac gaaaacttgt tcaagaagac
1701 aaaaagacaa gagctttcaa aaacgccgat tgctgaacat tcagatttcc
1751 tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc
1801 ctggaagatg gtgactgtca ttcactcgtc attcgattcg ctaaacgcaa
1851 accttatttt cgcttcaaag acgaaaactt ggaaaagctc aacgttctgt
1901 ccctgtacga tcttgttgtg aattgtaatc acggagaact ttcttcatct
1951 agcagagttg gatggaattt ggttgacatt gacaacatgg gatcagatga
2001 taacctcaat cgtaccattc gtcgtactaa cagcaaacca cgccatttta
2051 cttacgatct aatgatgatt accttcactg gctcagttac gcaatacctc
2101 atacctgaat ggcttggtga aagtttgacg gtttacgaag aaaaacatga
2151 aggcgctcgt ctttttgaaa aatctagctc gttttcaact ttaagctgca
2201 ttccggcaac gtttttagca aatcacatac taatcgaatg tttagaaaaa
2251 agctcgaaca aactgatttc tttcatggat ggtgtgatca gtgccatgtc
2301 cactagcatc gaattctcga ctttcaaaaa taccatgctc aacaacttga
2351 aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccaatc
2401 gcaggaacta gcagaaacaa gtcttttcgt tcctatttac gatcttctcg
2451 accaaaccat gtctatgacg cgttgtccta ttgtatctcc aagaaacaga
2501 acgggttgtt cacatcagaa gaaatgtgca tgtcttataa tctcagatca
2551 tttggaaaag tgggagttga ctatagcaac ggtgaattgt catatgatat
2601 ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg cttcgactta
2651 gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt
2701 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca
2751 tcaagaaaca gcaattgaag cagttcgatc caacacaatc actagtcaaa
2801 ttagagcaaa acttcaacca actacagcgc gatgataagc ttcattttaa
2851 ctgttgttat aattatccta ctttacacat attaaaccgt attttaaatg
2901 tttctaaaga cgtaattcca tttttatttg atcacaatca caacgctaac
2951 aataaaacga tgtttgactt atcttctacg cttaacaatt gtcgtgatat
3001 gaaagtttct gagagacata acttacttag aactttactt ttcggaagca
3051 cgctaggagt tatacttcat gtttgagggt gtgttatccc tggctgcaag
3101 cgggaggcgc gtgaacaggt gttccacgtc ttcttagatg cgggggggag
3151 tgaatacagc tgatgtc