Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate SDLY, complete genome.
ACC No: HM627884
Dated: 2010-11-22 | Length: 2781 | CRC: -1024031116
ID HM627884; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC HM627884;
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DT 22-NOV-2010 (Rel. 106, Created)
DT 22-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate SDLY, complete genome.
XX
KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Wang F., Ji W.L.;
RT "Molecular Characterization of Tomato Yellow Leaf Curl Virus in Shandong
RT Province of China";
RL Unpublished.
XX
RN [2]
RP 1-2781
RA Wang F., Ji W.L.;
RT ;
RL Submitted (05-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL College of Landscape and Horticulture, Qingdao Agricultural University,
RL No.700 Changcheng Road, Qingdao, Shandong 266109, China
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="Lycopersicon esculentum"
FT /isolate="SDLY"
FT /mol_type="genomic DNA"
FT /country="China:Laiyang, Shandong"
FT /collected_by="Wang Fu and Ji Wen-lei"
FT /collection_date="18-Mar-2010"
FT /db_xref="taxon:10832"
FT CDS 148. .498
FT /codon_start=1
FT /product="AV2 protein"
FT /protein_id="ADQ28135.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRGL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT CDS 308. .1084
FT /codon_start=1
FT /product="AV1 protein"
FT /protein_id="ADQ28134.1"
FT /translation="MSKRPGDIITSTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /product="AC3 protein"
FT /protein_id="ADQ28132.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKILGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /product="AC2 protein"
FT /protein_id="ADQ28131.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEDIGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /product="AC1 protein"
FT /protein_id="ADQ28130.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSFREYLDEEKNISLKNWALKNATFITLYEPLFA
FT SINQGPTQDSQEETNKA"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /product="AC4 protein"
FT /protein_id="ADQ28133.1"
FT /translation="MGNHISMCLSNSKASTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 757 A; 530 C; 612 G; 882 T; 0 other;
hm627884 Length: 2781 22-NOV-2010 Type: N Check: 1571 ..
1 accggatggc cgcgcctttt ctttttatgt ggtcctcacg agggttccac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtttgtc ttgcactatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attaggggtc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcacttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgacatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatattaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccttatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata tcttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg atgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctaa atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt cttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gacgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta cttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaataca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t