Sequence of DPV Oyo virus
Oyo virus segment L RNA polymerase gene, complete cds.
ACC No: HM639780
Dated: 2012-05-03 | Length: 6822 | CRC: 1110291046
ID HM639780; SV 1; linear; viral cRNA; STD; VRL; 6822 BP.
XX
AC HM639780;
XX
DT 03-MAY-2012 (Rel. 112, Created)
DT 03-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE Oyo virus segment L RNA polymerase gene, complete cds.
XX
KW .
XX
OS Oyo virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Orthobunyavirus;
OC unclassified Orthobunyavirus.
XX
RN [1]
RP 1-6822
RA Palacios G., Savji N., Tesh R., Bussetti A.V., Lipkin W.;
RT "Genetic Diversity of Orthobunyaviruses";
RL Unpublished.
XX
RN [2]
RP 1-6822
RA Palacios G., Savji N., Tesh R., Bussetti A.V., Lipkin W.;
RT ;
RL Submitted (07-JUL-2010) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 West 168th
RL Street, New York, NY 10032, USA
XX
CC GenBank Accession Numbers HM639778-HM639780 represent sequences
CC from the 3 segments of Oyo virus.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6822
FT /organism="Oyo virus"
FT /segment="L"
FT /mol_type="viral cRNA"
FT /country="Nigeria"
FT /collection_date="1964"
FT /db_xref="taxon:1027632"
FT CDS 35. .6757
FT /codon_start=1
FT /product="RNA polymerase"
FT /protein_id="AEE01391.1"
FT /translation="MDPSKVNQFRHRINAVKEATLARDILSDMYMARHEYFATEYCLSN
FT NIEYRNDVRASEIYCTVYPDRSPFDIERIRYTPDNYVFLGDRLYIIDFKVSTDSDSSIE
FT TYNKYINAFQEFFPDIEFEVVIVRCNPMSMQITINSDSFQQLFPNIPTNLSFHWFFELR
FT RILLEKFRDNEEFQDMIDHGDFTLTAPWLDEDTEDLYTHPVYLEFIESLSSKHESLFQR
FT SLNFDAYSSQTDKWNSNLIYLKEKTTETYNNYVHDMAQSIFETPDIDIPTKDKIIEGWN
FT NMYMRIQNERELSKSPVDQKPSIHFIWGKPDKNKPTGNNEKIIRLSKSLQGIKDNTGYA
FT NNFKSIGILSDFSSDVNKYENFCSVLKKEARSKAKPNSKGVEPIKIKNCTILWEQQFKY
FT EIIDNDKYSRSNFYKNYLGIGKHKQFKDRTDIDLSRPKILDFEDMIIKLASKTMIQKAK
FT SVLNDENILEHKGCFLDEYIENIKVCSVETFDFINKLTKTNFWSSINDFSILMKNMLSV
FT SQYNKYNTFRIVTCANNNLFGIVFPSSNIRTKKSTIVFVTIVLHEDKSEILDAGALFNT
FT YETSGGFISISKAIRLDKERCQRIISSPGLFILTAVLLKNDNKTIVDSDVMTFSYFTSL
FT SITKAMLSLTEPARYMIMNSLALSSQVKEYIEEKFSPYTKTLFSVYMTELIKRGCMNAN
FT SIREKINLRNIHMSDLEMTQKGVSDDKTLTGIWFPGEVSLKEYINQVYLPFYFNSKGLH
FT EKHHVAIDLAKTVLEIEKDQRESLPSAWGVNFEKQTVNLDILIYSLAENLMLDTSRHKH
FT LRHRVESRNNFKRSLTTISTFTSSKSCIKIGDFYEEKSKQNAKYLKDRNTEIKKYKVAN
FT PLFDNEILEHEIKHSDYNDLIRAIPEYIDMKSTKVFDEMYVYIEKNPKNTIEEIMEVMK
FT DHKTFYFTFFNKGQKTFKDREIFVGELQAKMCLYCIERISKERCKLNPEEMISEPGDGK
FT LKKLEQKAEDEMRFIVENLQPVGKCDPNSLIEAVNKPKGSKFEINADMSKWSAQDVLFK
FT YFWLFAMDPILYPNEKKRILYFLCNYMQKRLILPDEMMCSILDQKEVRQFDLIREMTEN
FT YKRNYVIIKRNWLQGNLNYTSSYLHSCSMSVYKEVVKRATALLDGKVVVNSLVHSDDNQ
FT TSVNFIQDKLSNDYLLSFVMKTFQKVCASFGNQVNMKKTYATNFIKEFVSLFNIYGEPY
FT SVYGRFLLTCVGDCAYIGPYEDFASRLSATQTALKHGCPPSNAWLSIAMNSWMTYNTYN
FT MLPGQANDPVKSLAMERKHIPIELGGLLNSELSTIALLGLESGNTTFLTSLLKRMSGVM
FT IRRENVTKQVQDIKKWDISSLKKHELFYLKLLRYVYMDAIITNDSTVGETSEMRNRSLI
FT TPRKFTTKGSLKRLKSYDDYKEICESSEKIEELFQYMIRNPELLVTKGETITEYKMTIL
FT YRYNSKKFKESLSVQTPVQLMIEQILYSNKPTVDYNSISDKFYSIDDLELESDEIIGKY
FT TISETLSKIVLDLEKLPLTNDDVATVYNFCICNDPLTLSIANSLILKVESSEVSRTGLV
FT ATTMPEIRNLKLIQYSPAIVIRAYIHSNYDFKGIDEAELRRDVLHLSEFIDKTGLKDRM
FT EKKIEDYYNSNDDESLMFRLRELTKFYQICYDYIKSTEHKVKVFILPTRTYTSQDFISV
FT VMGNYLSDKSWSIVHFLKPLEGNNYKGQVAKDPMIELQIADECFRLLAHFTDYFIADYT
FT KKQFLIKILSEFKFKDFKVSNLWQLLKQSEHRLKFLPILYIMDELTNRDLVKYDSYRTD
FT ERITWNDWQLSQRLNIGRIDLVINGYNKRIAIYGEDNKLLEAILYIKRDTFDQIPSQSR
FT KLLNARHNLLLEKMEPIKVLDSRSWYICYQKGRKNRYDYVVLNGYQINSRNKSIDDAAH
FT RSKNYTVAVCPVGINTFTDTESVDIASVKNLNYEHTSCTKLKINEYETATIRRCNLSKM
FT SFFDGPQIIAGSLNINNLIVSKSLLTLNYKSILKVDLLSILPIFNCNQTDQEIDFEFLS
FT EEPVDVDEVMDLESQPVFSITVSKKSKGKITYKKAIEECIKINTEKFEDLFDFFEDGFY
FT SSKNLGVIRTIVALIDELTTNEWSTKLKESIHLCMSTKGYDAMFHTFTLQDAFLLKDGV
FT NKIINWEKIIIFLKKMPDIREEPWKEIFANFKTKAILNANEEMSKKSASLTLEDLAEEL
FT AEAGGHSKYQFH"
XX
SQ Sequence 6822 BP; 2620 A; 1044 C; 1179 G; 1979 T; 0 other;
hm639780 Length: 6822 03-MAY-2012 Type: N Check: 341 ..
1 tgatatatac ttaaacatca caactcttta aaccatggat ccttcaaaag
51 tcaaccaatt ccgacacaga atcaatgctg tgaaagaagc cactcttgca
101 agagatatac tttcagatat gtatatggca agacatgagt attttgctac
151 agaatattgc ctttcaaaca atattgaata caggaatgat gttagagctt
201 cagaaatata ctgtacagtg tatcctgaca gatctccgtt tgatattgag
251 aggattagat acacccccga taactatgta tttttgggag ataggttata
301 cataatagat ttcaaagtgt caacagattc tgacagttct attgagactt
351 ataacaaata cataaatgca ttccaagaat ttttcccaga tattgaattt
401 gaagttgtca tagtgaggtg taatcctatg agtatgcaga tcacaatcaa
451 ttctgatagt tttcagcaat tatttccgaa tataccaaca aatctttcat
501 tccattggtt ctttgaatta cgtcggatac tacttgaaaa atttagagat
551 aatgaagaat tccaagatat gatagaccat ggagatttta cattaactgc
601 accatggctg gatgaagata cagaagactt atatacccat ccagtttatt
651 tagaattcat tgaatcatta agctcaaaac atgaaagctt atttcaaagg
701 tctttaaatt tcgatgctta ttcaagccaa actgataagt ggaattccaa
751 tctaatatat ctcaaagaga aaactactga aacctacaat aattatgtac
801 acgatatggc acaaagtatt tttgaaacac cagatataga catcccgacc
851 aaagacaaga taatagaagg ctggaataac atgtacatgc gaatacaaaa
901 tgagagagaa ttgtcaaaaa gccctgttga tcagaagccg tccatacatt
951 ttatatgggg gaaacctgac aaaaataaac caacaggtaa caatgaaaag
1001 ataattaggc tctcaaaatc gttacaagga attaaggaca acacaggtta
1051 tgcaaataat tttaagtcta taggcatatt gtcagatttt tcatcagatg
1101 taaacaaata tgaaaatttt tgctcagtat taaaaaagga agcacgatca
1151 aaggctaagc ctaatagcaa gggggtagaa cctataaaaa ttaagaattg
1201 caccatacta tgggaacaac aatttaaata tgaaatcatc gacaatgata
1251 agtattctag atctaatttt tataagaatt atttagggat tggcaaacat
1301 aaacaattta aagatagaac tgatatagac ttatctagac ctaaaatact
1351 agattttgaa gatatgataa taaaacttgc atccaaaact atgatccaaa
1401 aggccaaatc cgtgctgaat gatgaaaata tcttggagca taaaggctgt
1451 tttttagacg agtacattga gaacataaaa gtatgttctg tagaaacatt
1501 tgacttcatc aacaaattga ccaaaacaaa cttttggtca tcaataaatg
1551 atttttctat tcttatgaaa aatatgctct cagtatctca gtataataaa
1601 tataatactt tcagaattgt aacatgcgca aacaataatc tatttggaat
1651 tgtcttccct tcttcgaata taagaacaaa gaaatctact atcgtctttg
1701 tgacgatagt gctacatgaa gacaagtcag aaattttgga cgctggggca
1751 ttgtttaata catatgaaac aagtggagga ttcatctcta tatcaaaagc
1801 aattagactt gataaagaga gatgtcaaag aataatttca tctcctggtc
1851 tgtttatact aacagcagtg ctattgaaaa atgacaacaa gactatagtt
1901 gattcagatg ttatgacttt ctcatacttc acatctttgt caataactaa
1951 ggctatgcta agtctaacag aacctgctag atacatgatc atgaactcgt
2001 tagctttatc tagtcaagtc aaagaataca tagaagaaaa attttctcca
2051 tatacaaaaa ctttattttc tgtttatatg acagaattaa tcaaaagagg
2101 atgtatgaat gccaattcaa tacgagaaaa gattaatcta agaaatatcc
2151 atatgagtga tttagaaatg acacaaaaag gtgtttcaga tgataaaaca
2201 ttaacaggta tttggtttcc tggggaagtc tcattgaagg agtatatcaa
2251 tcaagtctat ttgccatttt atttcaattc aaaaggcttg catgaaaagc
2301 atcatgtggc aatagattta gccaaaacag tattagagat agaaaaggat
2351 caaagagaaa gcctaccatc tgcctggggc gttaactttg aaaagcagac
2401 agttaatcta gacatcctaa tttattcttt agctgagaat cttatgttag
2451 acacttctag acataaacat ttgagacatc gtgtggagtc tagaaacaat
2501 tttaaaaggt cactaactac tatttcaact ttcacaagta gcaaatcctg
2551 cattaaaata ggcgattttt atgaagaaaa atctaaacaa aatgcgaaat
2601 atttaaaaga tagaaacaca gaaattaaaa aatataaagt agcaaaccca
2651 ctgtttgaca atgagatact tgaacatgaa ataaaacatt ctgattataa
2701 cgatcttata agggcaatac cagaatacat agacatgaaa tcaacaaaag
2751 tcttcgatga aatgtatgtg tatatagaaa agaaccccaa gaacacaata
2801 gaagagatta tggaagtaat gaaagatcat aagacatttt atttcacatt
2851 ttttaataaa ggccagaaaa catttaaaga ccgagaaata tttgtgggcg
2901 aactacaggc caaaatgtgc ctttattgta ttgagcgtat ctcgaaggaa
2951 agatgcaagt taaacccaga agaaatgatt tctgaaccag gagatggtaa
3001 gttaaaaaaa ttagaacaaa aagcggaaga cgaaatgaga ttcattgtcg
3051 aaaacttaca accagtgggc aaatgtgacc ctaattcatt aatagaagct
3101 gttaacaaac ctaaaggttc caaatttgaa attaatgcag acatgtcaaa
3151 atggagtgcc caagatgtcc tattcaagta tttctggctt tttgcaatgg
3201 acccaatact ttatcctaat gagaaaaaaa gaatactata cttcctatgt
3251 aattacatgc agaaaagatt gatattacct gacgaaatga tgtgttcaat
3301 actagatcaa aaagaagtac gacagtttga tctaataagg gagatgactg
3351 agaattacaa aagaaactac gttataatta agagaaattg gcttcaaggg
3401 aatttaaatt atacttcaag ctatctacac agttgctcaa tgtcagtata
3451 caaagaagtt gtaaagagag caacggcact cttagatggg aaagttgtcg
3501 taaactctct tgtacactca gatgataacc agacttcagt caatttcatc
3551 caggataaat tgtcaaatga ttatctcttg tcatttgtaa tgaaaacatt
3601 tcaaaaagtc tgtgcatcat ttggaaacca ggtgaatatg aaaaagacat
3651 atgccacaaa tttcataaaa gagttcgtgt cactcttcaa catatacggt
3701 gaaccatata gcgtatatgg tagattcctt ttaacatgtg ttggtgattg
3751 tgcatatata ggtccatatg aggattttgc cagcagacta tctgcaacac
3801 agactgccct gaagcatggg tgtcctccat ccaatgcatg gcttagcatt
3851 gctatgaatt catggatgac atacaatact tacaacatgt taccaggtca
3901 agcaaatgac cctgttaaga gcttggcaat ggaaagaaaa catataccca
3951 tcgaacttgg gggtttactg aattcagaac tttcgactat agcattgctt
4001 gggctagaat ctggcaatac aacatttttg acaagcctat tgaaaaggat
4051 gtcaggtgtc atgattcgtc gagaaaacgt tactaaacaa gttcaagata
4101 taaaaaagtg ggatatctct tctctaaaaa agcatgaact cttttaccta
4151 aaattgttaa ggtatgttta tatggatgca atcatcacta atgactcgac
4201 cgtaggagaa acaagcgaaa tgaggaacag atcattgata acgcccagga
4251 aatttacaac caagggctca cttaagagat taaaatcata tgatgattat
4301 aaagaaattt gtgaaagttc agaaaaaatt gaggaactat ttcaatatat
4351 gattcggaac cctgaacttt tagttacaaa aggagaaaca atcactgagt
4401 acaaaatgac catattatat agatataact caaaaaaatt caaagaaagc
4451 ctctcagtac agacgccggt tcaactgatg atagaacaaa tattgtattc
4501 taataaacct acagtcgatt ataattcaat atctgataaa ttttatagta
4551 ttgatgattt agaacttgaa tcagatgaaa taattggaaa atacacaatc
4601 tcagaaacat tgtcaaaaat tgtactggat ttagaaaaac tgcctttaac
4651 taatgatgat gtagcaacag tatataattt ctgtatatgc aatgatcctc
4701 tgactttatc aattgccaac tcacttattt taaaagtaga aagtagtgag
4751 gtgagcagaa caggattagt tgctactacc atgcctgaga tcagaaacct
4801 aaagttgata cagtactcac cagctattgt gatacgggca tatattcatt
4851 ctaattatga ttttaaagga attgatgaag cagaactgag aagagacgtg
4901 cttcatttgt ctgagtttat agataaaaca ggtttaaaag acagaatgga
4951 gaaaaaaatt gaagattatt ataatagtaa tgatgatgaa agtctcatgt
5001 tcaggttaag agaactaact aagttttatc agatttgtta tgattatata
5051 aaatcaacag aacacaaagt gaaagttttt atattgccaa caaggacata
5101 tacaagccag gattttatct cagtagtaat ggggaattat ttgtctgaca
5151 aatcatggtc tatagttcat tttttgaaac cgcttgaggg aaataattat
5201 aaaggacagg ttgcaaaaga tccaatgatt gaattacaaa ttgcagatga
5251 gtgcttcaga ttactagctc atttcacaga ttatttcatt gctgattaca
5301 caaagaaaca attcttaata aaaattctct cagaatttaa attcaaagat
5351 tttaaagtta gcaatttatg gcagctgctc aaacagtcag agcatagatt
5401 aaagtttttg ccaatactct atatcatgga cgaattgaca aatagagatc
5451 tggtaaaata tgactcttat agaaccgatg agaggataac atggaatgat
5501 tggcagttat ctcaacgttt aaatattggc aggattgact tagtaataaa
5551 cggatataat aaaagaattg ctatatatgg tgaagacaat aaactattag
5601 aagccatact atatatcaag agagatactt ttgatcagat accaagtcaa
5651 tctcggaaat tgttgaatgc tagacacaat ttactgcttg agaaaatgga
5701 gccaatcaaa gtattagact ccagatcttg gtacatatgt taccagaagg
5751 gaaggaagaa caggtatgat tatgttgtgt tgaatgggta tcagataaac
5801 tctagaaaca agagtataga cgatgctgca cacaggtcaa aaaattatac
5851 agttgccgtc tgtccagtag gcatcaacac attcactgac actgaatctg
5901 ttgatattgc aagtgttaaa aatctgaact atgaacatac ctcttgtacg
5951 aaactaaaga tcaatgaata tgaaactgct actattagaa gatgcaacct
6001 ttctaaaatg tcattttttg atgggcctca aatcattgca ggatccttga
6051 acatcaacaa tttaatagta tctaaatcac ttctaactct aaattataaa
6101 agtattttga aagttgatct gctttccata ctgcctatat ttaactgcaa
6151 tcaaacggat caggaaatag attttgaatt cttgtcagaa gagccagttg
6201 atgtggacga agttatggat ttagaatcgc agcctgtttt ttctatcact
6251 gtttcaaaaa aatccaaagg caagataacg tacaagaagg caatagaaga
6301 atgtataaaa ataaatacag agaaatttga ggatttattt gatttctttg
6351 aagatggatt ttactcttca aagaatttag gagtaattag aactatagtt
6401 gcattaattg atgaactgac aactaatgaa tggagtacga aattaaaaga
6451 atcaatacat ttatgcatgt caacaaaggg ctatgatgca atgtttcaca
6501 cattcacatt acaagacgca tttttattga aagatggtgt taataaaatt
6551 ataaattggg agaaaataat aatcttcttg aaaaaaatgc cagacataag
6601 agaagaacca tggaaagaaa tatttgcaaa tttcaagaca aaagctatat
6651 tgaatgcaaa tgaggagatg agcaagaaaa gtgctagctt aacattggag
6701 gacttggcag aggaacttgc tgaagccgga ggccattcaa aatatcaatt
6751 tcactaatca agaaaatgta tacaatagaa tcccatagca acaaaacata
6801 atcatacctg ttcttccttc ct