Sequence of DPV Aquareovirus E
Scophthalmus maximus reovirus segment M4, complete sequence.
ACC No: HM989933
Dated: 2011-06-28 | Length: 2640 | CRC: 550755564
ID HM989933; SV 1; linear; genomic RNA; STD; VRL; 2640 BP.
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AC HM989933;
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DT 15-MAR-2011 (Rel. 108, Created)
DT 28-JUN-2011 (Rel. 109, Last updated, Version 2)
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DE Scophthalmus maximus reovirus segment M4, complete sequence.
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KW .
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OS Scophthalmus maximus reovirus
OC Viruses; dsRNA viruses; Reoviridae; unclassified Reoviridae.
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RN [1]
RC Publication Status: Online-Only
RP 1-2640
RX PUBMED; 21689389.
RA Ke F., He L.B., Pei C., Zhang Q.Y.;
RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG
RT start site";
RL BMC Genomics 12(1):323-323(2011).
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RN [2]
RP 1-2640
RA Ke F., He L.B., Pei C., Zhang Q.Y.;
RT ;
RL Submitted (26-JUL-2010) to the INSDC.
RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of
RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan,
RL Hubei 430072, China
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CC GenBank Accession Numbers HM989930-HM989940 represent the complete
CC genome of Scophthalmus maximus reovirus.
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FH Key Location/Qualifiers
FH
FT source 1. .2640
FT /organism="Scophthalmus maximus reovirus"
FT /segment="M4"
FT /host="Scophthalmus maximus (turbot)"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Jun-2007"
FT /note="acronym: SMReV"
FT /db_xref="taxon:994485"
FT CDS 25. .2478
FT /codon_start=1
FT /product="NS88"
FT /note="nonstructural protein; involved in the formation of
FT viral inclusion bodies with NS38"
FT /db_xref="UniProtKB/TrEMBL:F2WJK9"
FT /protein_id="ADZ31979.1"
FT /translation="MAARINLRMLSADSSLTTNKPSTPSHPPSDNPSTSAAAGFQSLPN
FT LSFRSPPTWSLTYKGVAFHGVCDPPCEPFIPIAGYLSQMISHMTPSSEPHRIEDVNNLV
FT AVGLSQLGVTPSMSLGEVEVLLNDRVARVHDGSGPFFDPVPAPVPAPLSPVPAATVSPP
FT PPAPPASLAPAVTSLNPALAAAPTLKPSSVPTGTQTLLMPLQLTAATSTATPTASPTVT
FT DALSTTRADCGPTSVNEPSTLWSESALDEFDGPAHCSLATNPPLIDGRLYSQVVQPPVK
FT PVDQFIVCDSRRVSIGSTSKASSVASETPALMELNVTPASTGPRRPPRPAPGPFPPRTG
FT RRRAHHIADDNTYNEARLAYARGRPTTSPLYNQGLEIHSERAFFSSFPHHINGKWVAPT
FT SVLNVVAGADEDLNDSTIHSVRATDCSGMYEVTATNGEVISRLNVMFIDSDTTSQALTH
FT FITPHSLIAITPYAAALMVQFRLTKGVFSKSHRRMVMGIDPVMIHLNSRGVALWNVLTQ
FT HLLEYAELYASASLRDLVTALLDPVNVTTMRWMKRTLPNCVAAVCEMRTDPIPTLSHIL
FT NVETPTTPVSSAASSLKLSELQAENTALTSQISTLEAQLEAATLSLATTRESIQREQAV
FT HSADSLKQYLHDHVCVNCHEEPFLNATVGVEAAGQILSARQNARERAADKVRQAVSAGF
FT AETVTMLQERNLSLDQRVKATVDELNATATQLRSALSRLSSAEGRSHDLVQRNELLESQ
FT LVEARQLSSYQDSHQKETITALQTTIRDSLPYTPVHYGQGQFTMPSLPPVRSMMPDFDP
FT SDLLM"
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SQ Sequence 2640 BP; 498 A; 979 C; 540 G; 623 T; 0 other;
hm989933 Length: 2640 28-JUN-2011 Type: N Check: 5097 ..
1 gttttaagtg aactgctcga gaagatggcc gcccgcatca acctccgaat
51 gctcagtgcc gactctagtc ttactacaaa caaaccgtct accccttccc
101 atcctccttc cgacaaccca tccacctccg ccgcagccgg cttccagtcc
151 ctgcctaacc tgtccttccg ttccccaccc acctggtccc tcacctacaa
201 aggtgttgct ttccatggcg tctgtgaccc tccttgcgag cctttcatcc
251 ccattgctgg ctaccttagt cagatgatat cgcacatgac cccttcctcc
301 gaaccccatc gcatcgagga tgtcaacaac ctggttgccg ttggtctttc
351 ccagctcggt gtaacaccca gcatgtctct cggcgaagtg gaagtccttc
401 tgaatgatcg tgtggctcgt gtccatgacg gatctggccc tttcttcgac
451 cctgtccccg ctccggttcc tgctcctctc tcccctgttc cagccgctac
501 tgtctctcct cccccacccg cacctcccgc atctctggct ccggccgtca
551 cctcccttaa cccggctctc gccgcagccc ccaccctcaa gccctcctct
601 gtcccgactg gcacccagac cctcctcatg ccactccaac tgaccgctgc
651 cacctctacc gctacaccga ctgcctcccc tactgtgacc gacgctctct
701 ccaccacccg tgctgactgt ggcccgacat ccgtgaacga accctccacc
751 ctgtggtccg aatctgctct ggatgaattt gatggccctg ctcactgttc
801 tctcgctacc aatccacctc tgattgatgg ccgcctgtac tcccaagtcg
851 ttcagccccc cgtcaagccc gtcgaccagt tcatcgtgtg tgactcacgt
901 cgtgtgtcca ttggttccac ctccaaggct tcctctgtcg ctagcgagac
951 cccggcattg atggagctta atgtcacccc agcttcgact ggtccccgtc
1001 gtcctcctcg ccctgccccc ggccccttcc cacctcggac tggtagacgt
1051 agggcccacc atatcgctga cgacaacacg tacaatgagg cacgtttggc
1101 ttacgctcgc ggtcgaccca ctacttcccc tctgtacaac caaggtttgg
1151 agattcactc cgagcgcgct ttcttctcct ccttccctca ccacatcaac
1201 ggcaaatggg ttgctcctac atctgtgctc aacgtcgttg ctggtgctga
1251 tgaggatctg aatgactcca ccatccactc cgtccgcgcc accgactgta
1301 gtggtatgta cgaggtcacc gcgaccaacg gcgaagtcat ctcccgactg
1351 aacgtcatgt tcatcgacag tgacaccacc tcacaggctc tgactcactt
1401 catcaccccg cattcactca ttgctattac tccttatgcc gccgccctca
1451 tggtccagtt tagactcacc aaaggcgtct tctccaagtc acaccgacgt
1501 atggtcatgg ggattgatcc agtgatgatc cacctgaact cgcgtggagt
1551 tgctctctgg aacgtcctta ctcagcatct gctggagtac gccgagctat
1601 acgcctctgc cagtctgagg gatcttgtca ccgccctgct cgaccctgtg
1651 aatgtcacca ccatgcgatg gatgaagcgc acgcttccca attgtgtcgc
1701 agccgtgtgc gagatgcgta ccgatcccat ccccaccctg tcccacattc
1751 tgaacgtcga gacccccacc acgcctgttt ccagtgccgc cagcagcctc
1801 aagttgtccg aacttcaagc cgagaatacc gctctgacat cccagatctc
1851 aaccttggag gcccaacttg aggcagctac cctctctctc gccaccaccc
1901 gcgaatccat ccaacgtgag caggcggtgc attcagccga ctccctaaag
1951 cagtacctcc atgaccacgt ctgtgtgaac tgtcatgagg aaccattcct
2001 taacgcgacc gttggcgtcg aagccgctgg ccagattctc tctgcccgtc
2051 agaatgcccg agagcgtgcc gctgataaag ttcgtcaggc tgtcagtgct
2101 ggtttcgccg agactgtcac catgcttcaa gagcgtaatc tttccctgga
2151 tcaacgtgtc aaagccaccg tagacgaatt gaatgccacc gccacacaac
2201 tccgatctgc acttagccgt ttgtcgtccg cagagggccg ttcccatgac
2251 ttggttcaga gaaatgagct gcttgaatcc caactcgtcg aagcccgcca
2301 gctctcatcc tatcaagaca gccaccagaa ggagaccatc accgctctcc
2351 agactactat tcgagacagc ttaccttaca ccccagtcca ctatggacaa
2401 ggccaattca ctatgccctc ccttccaccc gtccggtcca tgatgcctga
2451 cttcgacccg tcagaccttc tcatgtagtc acttactcgt tatcgacctc
2501 acgctctgcc tcccgaccat gatttaagcg cgccgatccc cacccgcccg
2551 tattcacccc attccctttt cccaggctaa gtccactggc cttctctggt
2601 tgttgccgac cctctcttcc gatgcttcac tctattcatc