Sequence of DPV Sida golden mosaic Liguanea virus
Sida golden mosaic Liguanea virus-[Jamaica:1:2008] clone pLigA1 segment DNA-A, complete sequence.
ACC No: HQ009522
Dated: 2011-08-02 | Length: 2608 | CRC: -461898764
ID HQ009522; SV 1; circular; genomic DNA; STD; VRL; 2608 BP.
XX
AC HQ009522;
XX
DT 13-DEC-2010 (Rel. 107, Created)
DT 02-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE Sida golden mosaic Liguanea virus-[Jamaica:1:2008] clone pLigA1 segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Sida golden mosaic Liguanea virus-[Jamaica:1:2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2608
RX PUBMED; 21625977.
RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.;
RT "First report of the complete sequence of Sida golden yellow vein virus
RT from Jamaica";
RL Arch. Virol. 156(8):1481-1484(2011).
XX
RN [2]
RP 1-2608
RA Stewart C.S., Kon T., Gilbertson B.L., Roye M.E.;
RT ;
RL Submitted (03-AUG-2010) to the INSDC.
RL The Biotechnology Centre, The University of the West Indies, Mona Road,
RL Mona, St. Andrew Kgn 7, Jamaica
XX
FH Key Location/Qualifiers
FH
FT source 1. .2608
FT /organism="Sida golden mosaic Liguanea
FT virus-[Jamaica:1:2008]"
FT /segment="DNA-A"
FT /host="Sida sp."
FT /mol_type="genomic DNA"
FT /country="Jamaica"
FT /collection_date="2008"
FT /clone="pLigA1"
FT /db_xref="taxon:929768"
FT misc_feature 15. .2461
FT /note="IR; contains sequences essential to the initiation
FT of replication"
FT gene 183. .938
FT /gene="CP"
FT CDS 183. .938
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /function="viral encapsidation"
FT /db_xref="GOA:E5KC01"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E5KC01"
FT /protein_id="ADR77531.1"
FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY
FT RKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI
FT KNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(935. .1333)
FT /gene="REn"
FT CDS complement(935. .1333)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer"
FT /function="enhances replication"
FT /db_xref="GOA:E5KC02"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E5KC02"
FT /protein_id="ADR77534.1"
FT /translation="MDSRAGELITARQAENGVYIWEIENPLYFKIYWIEDQLHTRTRVY
FT HIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGLTYLTRFRQLVNEYLYQLGVIGINN
FT VIRAVRFATAKPYVTHVLENHEIKFKFY"
FT gene complement(1080. .1544)
FT /gene="TrAP"
FT CDS complement(1080. .1544)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /function="may act as a gene silencing suppressor"
FT /db_xref="GOA:E5KC03"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E5KC03"
FT /protein_id="ADR77533.1"
FT /translation="MVRVPAIKNSWTKLKTQLSGTGPTRTLSSSPSQPPSIKKAHRQAK
FT RRAIRRRRIDLECGCSIYFHINCTGHGFTRRGTHHCTSGREWRIYLGDRKSPVFQDILD
FT RGPATHQDQSVPHTNQIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFN"
FT gene complement(1381. .2466)
FT /gene="Rep"
FT CDS complement(1381. .2466)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /function="essential for viral replication"
FT /db_xref="GOA:E5KC04"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E5KC04"
FT /protein_id="ADR77532.1"
FT /translation="MPSVKHFRINAKNFFLTYADCSLSKEEALSQLQNINTPVNQKFIK
FT ICREFHKNGNPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT NKDGDTLEWGEFQIDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT NLVANAHRIFTKAPEPWVPPFPLSSFTAVPDEMQDWADEYFGRGAAARPERPVSIIVEG
FT DSRTGKTMWARSLGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALRNWTNKNAIFITLT
FT APLYQEGTQASQEAGNQETQD"
FT gene complement(2052. .2309)
FT /gene="AC4"
FT CDS complement(2052. .2309)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /function="may act as a gene silencing suppressor"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E5KC05"
FT /protein_id="ADR77535.1"
FT /translation="MGILISTCSYSLKENTSARITDSSIWSPQPGQHISIQTYRELNPA
FT PTSSPTSTRTATHWNGGNSRSTGEVLEEAANRLTTHMPRR"
XX
SQ Sequence 2608 BP; 624 A; 595 C; 622 G; 767 T; 0 other;
hq009522 Length: 2608 02-AUG-2011 Type: N Check: 9108 ..
1 accggatggc cgcgcgattt ttccgccttt tactttccac gcgcgctccg
51 cttttctcac tcgcgctatc gtccaatcat attgcgtctg ccgcgcctaa
101 ttaattcaaa caacttgggc cctaagttgt tgtctgggcc tatataggaa
151 aagcgggttt gggccatagt ctttaattca aaatgactaa gcgcgattcg
201 tcttggcgct cgattgctgg aacctcaaag gttcgtcgca cgttgaattt
251 ctccccacgt ggaggtggtg gcccaaaaca gacaagggcc tcagaatggg
301 ttaacaggcc tatgtacagg aagcccttga tctatcggac tctacggacg
351 cccgacgttc ccagaggttg cgaaggcccg tgcaaggtcc agtcctatga
401 acagcgtcat gatatctccc acgtcggcaa ggtgatgtgt atttctgatg
451 tcactcgtgg taatggcatt acccaccgtg tgggtaagcg tttttgtgta
501 aagtctgtgt atattttagg gaagatatgg atggatgaga acattaagct
551 caagaaccat acgaacagcg tcatgttctg gttggtcaga gaccgacgac
601 cctatggcac cccaatggat tttggccagg tgttcaacat gtatgataac
651 gagcctagca ccgccacgat taagaacgat ctccgtgatc gttatcaggt
701 tatgcacagg ttctatggca aggtcactgg tggtcaatat gccagcaacg
751 agcaggcgtt ggttaggcga ttctggaagg tcaacaatca tgtggtctac
801 aaccaccaag aggctgggaa atatgagaat cacactgaga acgctttatt
851 attgtacatg gcatgtactc atgcttcaaa ccccgtgtat gcaacattga
901 aaattcgaat ctatttttat gattcgataa caaattaata aaatttaaat
951 tttatttcat gattctcaag cacatgagtt acatatggtt tggctgttgc
1001 aaaacgaaca gctctaatta cattgtttat cccaattaca cctaattggt
1051 acaggtactc attaactaat tgtctaaatc tagttaaata agttaaccca
1101 gaagctgtca tcgatgtcgt ccagacttgg aagttcaggt aggctttgtg
1151 gagacccaac gctctcctca ggttgtggtt gaatctgatt tgtatgtggt
1201 acactctggt cctggtgtgt agctggtcct ctatccagta tatcttgaaa
1251 tacaggggat tttctatctc ccagatatat acgccattct ctgcctgacg
1301 tgcagtgatg agttcccctg cgcgtgaatc catgtcccgt gcagttgatg
1351 tggaagtata tggagcaccc gcactctaga tcaatcctgc gtctcctgat
1401 tgcccgcctc ttggcttgcc tgtgtgcctt cttgatagag gggggctgtg
1451 agggtgatga agatagcgtt cttgttggtc cagttcctga gagctgagtt
1501 ttcagctttg tccaggaatt ctttatagct ggcaccctca ccaggattgc
1551 aaagtacgat tgatgggatc cctcctttaa tttggactgg cttgccgtac
1601 ttgcaatttg actgccagtc cttctgggcc cccagaagtt ctttccagtg
1651 ctttagcttt agatattgcg gtgcgacgtc atcaatgacg ttatattcca
1701 cttcgtttga aaagacccgg gaattgaagt ctaggtgtcc actgagataa
1751 ttatgtgggc ctaacgaccg agcccacatc gtcttccctg tcctcgagtc
1801 accttctact atgatactca caggcctctc tggccgcgca gcggcacctc
1851 ttccaaaata ctcatcggcc cagtcttgca tctcgtccgg aacggcagtg
1901 aaagaggaga ggggaaacgg aggtacccat ggttccggag ccttagtgaa
1951 aatccgatga gcattggcaa ccaaattgtg atgttgaagg aagaaatgtt
2001 gaggctgctc ctccttgatt atttgcagag cctcttctgc agaagaggca
2051 ttcaacgcct tggcatatgt gtcgttagcc gattggcagc ctcctctagc
2101 acttctcccg tcgatctgga attcccccca ttccagtgtg tcgccgtcct
2151 tgttgatgta ggacttgacg tcggagctgg atttagctcc ctgtatgttt
2201 ggatggaaat gtgctgacct ggttggggag accagatcga agaatctgtt
2251 attcgtgcac tggtattttc cttcaaactg tatgagcacg tggagatgag
2301 gattcccatt cttgtgaaat tctctgcaga tcttgatgaa cttttgattt
2351 actggagtat taatgttttg taactgtgat agtgcttcct ctttgcttag
2401 ggagcaatct gcataagtga ggaaaaagtt tttggcattt attctgaaat
2451 gtttaaccga tggcattttg taatatgaag ggtgtacacc gattgagctc
2501 tctcaaactt gctcattcaa tcggtgtaac ggtgtataat ttatactaga
2551 accctcaata gaactctcaa tctcgttcac acacgtggcg gccatccgct
2601 ataatatt