Sequence of DPV Grapevine leafroll-associated virus 3

Grapevine leafroll-associated virus 3 isolate 3-14 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds.

ACC No: HQ130289

Dated: 2010-11-24 | Length: 4711 | CRC: 247590078

                
ID   HQ130289; SV 1; linear; genomic RNA; STD; VRL; 4711 BP.
XX
AC   HQ130289;
XX
DT   24-NOV-2010 (Rel. 106, Created)
DT   24-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Grapevine leafroll-associated virus 3 isolate 3-14 coat protein, divergent
DE   coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa
DE   protein, and 7 kDa protein genes, complete cds.
XX
KW   .
XX
OS   Grapevine leafroll-associated virus 3
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Ampelovirus.
XX
RN   [1]
RP   1-4711
RA   Wang J., Sharma A.M., Duffy S., Almeida R.P.P.;
RT   "3' terminal 4.7-kb region of Grapevine leafroll-associated virus 3";
RL   Phytopathology 0:0-0(2011).
XX
RN   [2]
RP   1-4711
RA   Wang J., Sharma A.M., Duffy S., Almeida R.P.P.;
RT   ;
RL   Submitted (12-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Environmental Science, Policy and Management, University of
RL   California, Berkeley, Berkeley, CA 94720, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4711
FT                   /organism="Grapevine leafroll-associated virus 3"
FT                   /host="Vitis vinifera cv. Merlot"
FT                   /isolate="3-14"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:California, Napa Valley"
FT                   /collection_date="16-Jun-2009"
FT                   /db_xref="taxon:55951"
FT   CDS             117. .1058
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP; ORF6"
FT                   /protein_id="ADQ57510.1"
FT                   /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ
FT                   AELTGIAVVPEKYVFATAALATAAQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVF
FT                   EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDD
FT                   TTTKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE
FT                   NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAI
FT                   LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK"
FT   CDS             1121. .2554
FT                   /codon_start=1
FT                   /product="divergent coat protein"
FT                   /note="CPm; ORF7"
FT                   /protein_id="ADQ57511.1"
FT                   /translation="MGAYTHIDFHESRLLVDKQDYLSFKSAGEAPPDPPGYVRPDSYTR
FT                   AYLIQRADFPRIENLSVTLSIASNKLASGLMGSDAVSSSFMLMNDGGDYFECGVCHNKP
FT                   YLGREVVFCKKYIGGRGVEITTGKNYSSNNWNESSYVLHVNIVGGTAQTSVNSTYTQTD
FT                   VSGLPKNWTRIYKITKIVSVDQNLYPGCFSSSKLNVMLIRSLVVSPVRTFFRVVLLKPL
FT                   RKSFNARVEDVLSIDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGK
FT                   ISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL
FT                   FVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFT
FT                   HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAVAI
FT                   KAANLRRKGSETYNILESI"
FT   CDS             2565. .3122
FT                   /codon_start=1
FT                   /product="21 kDa protein"
FT                   /note="p21; ORF8"
FT                   /protein_id="ADQ57512.1"
FT                   /translation="MEFRPVLITVRRDPGVNTGSLKVMAYDLHYDNIFDNCVVKSFRDT
FT                   DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEI
FT                   SEIQRAGYLETYLGDGQADTDIFFDVLTNNKTKIRWLVNKDHSAWCGILNDLKWEESNK
FT                   EKFKGRDILDTYILSSDYPGFK"
FT   CDS             3119. .3652
FT                   /codon_start=1
FT                   /product="19.6 kDa protein"
FT                   /note="p20a; ORF9"
FT                   /protein_id="ADQ57513.1"
FT                   /translation="MRLLSLRYLILRLSKSLKTNDHLVLILIKEALINYYNASFTDESA
FT                   VLSDSRESIGNFLIARCSSQNSCRVMKALITNIVCKATIETARSFIGDLILVADSSISA
FT                   LEEAKSIRDNFRLRKRRGKYFYSGDCGSDVAKVRYILSGENRGLGYTDSLKLACVGREG
FT                   GGNILQHLLISSLG"
FT   CDS             3659. .4198
FT                   /codon_start=1
FT                   /product="19.7 kDa protein"
FT                   /note="p20b; ORF10"
FT                   /protein_id="ADQ57514.1"
FT                   /translation="MDLSFIIVQILSALYNNDVTALYILINAYKNVDDTTRWAAMGDPR
FT                   AEVDVVKAYVTTTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKS
FT                   MELFEVCRGKRGSKKYLGYLSDQCSGKHIMLTQTGLTAVEEADILRTNYLVSGNGYISN
FT                   CGIARMLILTLCCGVL"
FT   CDS             4201. .4311
FT                   /codon_start=1
FT                   /product="4 kDa protein"
FT                   /note="p4; ORF11"
FT                   /protein_id="ADQ57515.1"
FT                   /translation="MLCCSAVVKSSIGLRLTLLICAFLLAVLVVSFCRRR"
FT   CDS             4308. .4490
FT                   /codon_start=1
FT                   /product="7 kDa protein"
FT                   /note="p7; ORF12"
FT                   /protein_id="ADQ57516.1"
FT                   /translation="MRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIAMFISYYLYAL
FT                   IGICRKREGLTTSNG"
XX
SQ   Sequence 4711 BP; 1413 A; 880 C; 1150 G; 1268 T; 0 other;

hq130289 Length: 4711  24-NOV-2010  Type: N  Check: 1472  ..

       1  gggactactc taccacacca gctttaaagc tgcgtgtagt atgcgacgat
      51  gtttctcgta ttagtttcat aaaaattttt tattgctttg agtgtggttt
     101  ttgttgagtg gacgcgatgg cgtttgaact gaaattaggg cagatatatg
     151  aagttgtccc cgaaaacaat ctgagagtta gagtagggga tgcggcacaa
     201  ggaaagttta gtaaggcgag tttcttaaaa tacgttaagg acgggacgca
     251  ggcggagtta acaggaatcg ctgtagtgcc ggaaaagtac gtattcgcca
     301  cagcagcttt agctacagcg gcacaggagc cacctaagca gccgacaacg
     351  caagtggtgg aaccaccaga agccgatata ggggtggtgc cggaatctga
     401  gactcttaca ccaaataagc tggtttttga gaaagatcca gacaagttct
     451  taaagactat gggtaagggg atagctttgg acttaacggg ggttacccat
     501  aaaccgaaag ttattaacga gccgggaaaa gtatcagtag aggtagcaat
     551  gaagattaat accgcattgg tagagctgtg taagaaggtt atgggctccg
     601  atgacacaac aaccaagaca aaattcttct tgtacgtgat gcagatcgct
     651  tgcacgttct ttacatcgtc ttcgacggag ttcaaagagt tcgactacat
     701  agaaacggac gatggaaaga agatatatgc ggtgtgggta tacgattgca
     751  ttaaacaagc tgccgcttca acgggttacg aaaacccggt aaggcagtat
     801  ctagcatact tcacgccaac cttgatcacg gcgaccctga atggtaaact
     851  ggtgatgaat gaaaaggtca tggcacagca tggagtacca ccgaaattct
     901  ttccgtacgc gattgactgc gttcgtccga cgtacgatct gttcaataac
     951  gacgcaatac tagcatggaa tttagctaga cagcaggcgt ttagaaataa
    1001  gacggtgacg gccgataaca ccttacacaa cgtcttccaa ctattgcaga
    1051  agaaatagtt acgatcgatg tccataaatc ggtgaaaaat ttagaaatat
    1101  ttacctttta ttgataattc atgggggctt atacacacat agactttcat
    1151  gagtcgcgat tgctggtaga caagcaagac tatctttctt tcaagtcagc
    1201  aggtgaagct cctcctgatc ctcccgggta cgttcgccca gatagttata
    1251  cgagggctta tttgatacaa agagctgact ttcctcgaat tgaaaactta
    1301  tcagttacgt tatcgatagc cagtaataag ttagcttcag gtcttatggg
    1351  aagcgacgca gtatcgtcgt cgtttatgct gatgaatgac gggggagatt
    1401  acttcgagtg cggtgtgtgt cataacaaac cgtacttagg acgggaagtc
    1451  gtcttctgta agaaatacat aggtgggaga ggagtggaga tcaccactgg
    1501  taagaactac tcgtcgaaca actggaacga gtcgtcgtac gtattacatg
    1551  tgaatatagt cggtgggacg gcacagacct cagttaattc tacttatacg
    1601  caaacggacg ttagtggtct acccaaaaac tggacgcgta tctacaagat
    1651  aacgaagata gtgtccgtag atcagaacct ctaccctggt tgtttctcaa
    1701  gctcgaaact gaatgtaatg cttataaggt cactggtagt ttccccagta
    1751  cgcaccttct ttagggtcgt cttattgaaa cctttgagga aatcgttcaa
    1801  cgctagagtc gaggatgtgt taagcatcga cgatgcgacg ttgttagcgc
    1851  caagtccagt agcaccagcg cctacggaag gtgtaggtcc atcagagcaa
    1901  ctagacgtag tggctttaac gtctgacgta acggaattga tcaacaccag
    1951  ggggcagggc aagataagtt ttcccgactc agtgttatcg atcaatgaag
    2001  cggatatcta cgacgagcgg tatttaccga ttacggaagc tctacagata
    2051  aacgcaaggc tacgcagact cgttctttcg aaaggcggga gtcaaacacc
    2101  acgagatatg gggaacatga tagtggccat gatacaactt ttcgtactct
    2151  actctactgt aaagaatata agcgtcaaag atgggtatag ggtggagacc
    2201  gaattaggtc aaaagaaggt ctacttgagt tattcggaag taagggaagc
    2251  tatattagga gggaaatacg acgcgtctcc aaccaacact gtgcgatcct
    2301  ttatgaggta ttttactcac accactatta cgctacttat agagaagaaa
    2351  attcagccag cgtacactgc cctagctaag cacggcgtcc cgaagaggtt
    2401  cactccgtac tgcttcgact tcgcactact ggataataga tattacccgg
    2451  cagacgtgtt gaaggctaac gcaatggctt gcgctgtagc gattaaagcg
    2501  gctaatttga ggcgtaaagg ttcggagacg tataacatct tagaaagtat
    2551  ttgataatct agagatggaa ttcagaccag ttttaattac ggttcgtcgt
    2601  gatcccggtg taaacactgg tagtttgaaa gtgatggctt atgacttaca
    2651  ctacgacaac atattcgaca attgtgtggt aaagtcattt cgagacactg
    2701  acactggatt caccgttatg aaagagtatt cgacgaattc agcgtttata
    2751  ctaagtcctt ataaactgtt ttccgcggtt tttaataagg aaggtgagat
    2801  gataagtaac gatgtaggat cgagtttcag ggtttacaac atcttttcgc
    2851  aaatgtgtaa agatatcaac gagatcagcg agatacaacg tgctggttac
    2901  ctagaaacat acttaggaga cgggcaagcc gacaccgaca tatttttcga
    2951  cgtcttaacc aataacaaaa cgaagataag gtggttagtt aataaagacc
    3001  atagcgcgtg gtgcgggata ttgaatgatt tgaagtggga agagagcaac
    3051  aaggaaaaat ttaaggggag agacatatta gatacctaca tcttatcgtc
    3101  tgattaccca gggtttaaat gaggttactt tcgctccgct atcttatctt
    3151  gaggttgtca aagtcgctta aaacgaacga tcacctggtt ttgatactta
    3201  taaaggaagc gcttataaac tattacaacg cctcttttac cgatgagagt
    3251  gccgtactaa gcgactctcg cgaaagtata gggaattttc tcatagccag
    3301  gtgtagttcg caaaactcct gccgcgtcat gaaggccttg atcactaata
    3351  tagtctgtaa ggcgacgata gaaacagcta gaagctttat cggagactta
    3401  atactcgtcg ctgactcttc tatctcagcg ttggaggaag cgaaatcaat
    3451  tagagataat ttccgcttaa gaaaaaggag aggcaagtat ttttatagtg
    3501  gtgattgtgg atccgacgtt gcgaaagtta ggtatatttt gtcaggggag
    3551  aatcgaggat tagggtacac agattccttg aaactagcct gcgtaggtag
    3601  agaaggaggt ggaaacatac tacagcactt actaatctca tctctaggtt
    3651  aaagcatcat ggacctatcg tttattatcg tgcagatcct ttccgccttg
    3701  tacaataatg acgtgacagc cctgtacatc ttgatcaacg cgtacaaaaa
    3751  cgttgacgat acgacgcgct gggcagcgat gggcgatccg cgagctgagg
    3801  ttgacgttgt aaaggcttac gtaactacta cagcgacgac tgagctgcat
    3851  agaacaattc ttattgacag tatagactcc gccttcgctt acgaccaagt
    3901  ggggtgtttg gtgggcatag ctagaggttt gcttaaacat tcagaagatg
    3951  ttctggaagt catcaagtcg atggagttat tcgaagtgtg tcgtggaaag
    4001  aggggaagta aaaaatatct tggatactta agtgatcaat gctctggcaa
    4051  acatataatg ctaactcaga ccggactgac cgcagttgag gaagcagaca
    4101  tactacgaac gaattatcta gtcagtggta atgggtatat ttcaaactgt
    4151  gggatcgcta ggatgttgat cttgacgctt tgttgcggag tgctgtagaa
    4201  atgttgtgtt gttcagccgt tgtcaaatct tcaatcgggt tacggttaac
    4251  gttacttatt tgcgcatttt tgttagcggt gctagttgtc agcttttgta
    4301  gaaggcgatg aggcacttag aaaaacccat aagagtagcg gtacactatt
    4351  gcgtcgtgcg aagtgacgtt tgtgacgggt gggatgtatt tataggcgta
    4401  acgttaatcg ctatgtttat tagttactat ttgtacgctc taattggcat
    4451  atgtagaaaa agagaaggtt taacaaccag taatgggtaa aattccttca
    4501  ataaatttaa aataaagaaa agtaagaaaa atgaaataat taggctagtc
    4551  tttttgttcg tttttcgttt ttgtagaata ggttttattt cgaggtaaga
    4601  tgactaaact ctacctcacg gtttaatact ctgatatttg taaaattagt
    4651  ccgtaaagtc gatagtgata ttatattagt atagtataat aaacgccaaa
    4701  atccaatcaa a