Sequence of DPV Grapevine leafroll-associated virus 3
Grapevine leafroll-associated virus 3 isolate 3-14 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds.
ACC No: HQ130289
Dated: 2010-11-24 | Length: 4711 | CRC: 247590078
ID HQ130289; SV 1; linear; genomic RNA; STD; VRL; 4711 BP. XX AC HQ130289; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate 3-14 coat protein, divergent DE coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa DE protein, and 7 kDa protein genes, complete cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Ampelovirus. XX RN [1] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT "3' terminal 4.7-kb region of Grapevine leafroll-associated virus 3"; RL Phytopathology 0:0-0(2011). XX RN [2] RP 1-4711 RA Wang J., Sharma A.M., Duffy S., Almeida R.P.P.; RT ; RL Submitted (12-AUG-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Environmental Science, Policy and Management, University of RL California, Berkeley, Berkeley, CA 94720, USA XX FH Key Location/Qualifiers FH FT source 1. .4711 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera cv. Merlot" FT /isolate="3-14" FT /mol_type="genomic RNA" FT /country="USA:California, Napa Valley" FT /collection_date="16-Jun-2009" FT /db_xref="taxon:55951" FT CDS 117. .1058 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF6" FT /protein_id="ADQ57510.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIAVVPEKYVFATAALATAAQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDD FT TTTKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK" FT CDS 1121. .2554 FT /codon_start=1 FT /product="divergent coat protein" FT /note="CPm; ORF7" FT /protein_id="ADQ57511.1" FT /translation="MGAYTHIDFHESRLLVDKQDYLSFKSAGEAPPDPPGYVRPDSYTR FT AYLIQRADFPRIENLSVTLSIASNKLASGLMGSDAVSSSFMLMNDGGDYFECGVCHNKP FT YLGREVVFCKKYIGGRGVEITTGKNYSSNNWNESSYVLHVNIVGGTAQTSVNSTYTQTD FT VSGLPKNWTRIYKITKIVSVDQNLYPGCFSSSKLNVMLIRSLVVSPVRTFFRVVLLKPL FT RKSFNARVEDVLSIDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGK FT ISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL FT FVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAVAI FT KAANLRRKGSETYNILESI" FT CDS 2565. .3122 FT /codon_start=1 FT /product="21 kDa protein" FT /note="p21; ORF8" FT /protein_id="ADQ57512.1" FT /translation="MEFRPVLITVRRDPGVNTGSLKVMAYDLHYDNIFDNCVVKSFRDT FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEI FT SEIQRAGYLETYLGDGQADTDIFFDVLTNNKTKIRWLVNKDHSAWCGILNDLKWEESNK FT EKFKGRDILDTYILSSDYPGFK" FT CDS 3119. .3652 FT /codon_start=1 FT /product="19.6 kDa protein" FT /note="p20a; ORF9" FT /protein_id="ADQ57513.1" FT /translation="MRLLSLRYLILRLSKSLKTNDHLVLILIKEALINYYNASFTDESA FT VLSDSRESIGNFLIARCSSQNSCRVMKALITNIVCKATIETARSFIGDLILVADSSISA FT LEEAKSIRDNFRLRKRRGKYFYSGDCGSDVAKVRYILSGENRGLGYTDSLKLACVGREG FT GGNILQHLLISSLG" FT CDS 3659. .4198 FT /codon_start=1 FT /product="19.7 kDa protein" FT /note="p20b; ORF10" FT /protein_id="ADQ57514.1" FT /translation="MDLSFIIVQILSALYNNDVTALYILINAYKNVDDTTRWAAMGDPR FT AEVDVVKAYVTTTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKS FT MELFEVCRGKRGSKKYLGYLSDQCSGKHIMLTQTGLTAVEEADILRTNYLVSGNGYISN FT CGIARMLILTLCCGVL" FT CDS 4201. .4311 FT /codon_start=1 FT /product="4 kDa protein" FT /note="p4; ORF11" FT /protein_id="ADQ57515.1" FT /translation="MLCCSAVVKSSIGLRLTLLICAFLLAVLVVSFCRRR" FT CDS 4308. .4490 FT /codon_start=1 FT /product="7 kDa protein" FT /note="p7; ORF12" FT /protein_id="ADQ57516.1" FT /translation="MRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIAMFISYYLYAL FT IGICRKREGLTTSNG" XX SQ Sequence 4711 BP; 1413 A; 880 C; 1150 G; 1268 T; 0 other; hq130289 Length: 4711 24-NOV-2010 Type: N Check: 1472 .. 1 gggactactc taccacacca gctttaaagc tgcgtgtagt atgcgacgat 51 gtttctcgta ttagtttcat aaaaattttt tattgctttg agtgtggttt 101 ttgttgagtg gacgcgatgg cgtttgaact gaaattaggg cagatatatg 151 aagttgtccc cgaaaacaat ctgagagtta gagtagggga tgcggcacaa 201 ggaaagttta gtaaggcgag tttcttaaaa tacgttaagg acgggacgca 251 ggcggagtta acaggaatcg ctgtagtgcc ggaaaagtac gtattcgcca 301 cagcagcttt agctacagcg gcacaggagc cacctaagca gccgacaacg 351 caagtggtgg aaccaccaga agccgatata ggggtggtgc cggaatctga 401 gactcttaca ccaaataagc tggtttttga gaaagatcca gacaagttct 451 taaagactat gggtaagggg atagctttgg acttaacggg ggttacccat 501 aaaccgaaag ttattaacga gccgggaaaa gtatcagtag aggtagcaat 551 gaagattaat accgcattgg tagagctgtg taagaaggtt atgggctccg 601 atgacacaac aaccaagaca aaattcttct tgtacgtgat gcagatcgct 651 tgcacgttct ttacatcgtc ttcgacggag ttcaaagagt tcgactacat 701 agaaacggac gatggaaaga agatatatgc ggtgtgggta tacgattgca 751 ttaaacaagc tgccgcttca acgggttacg aaaacccggt aaggcagtat 801 ctagcatact tcacgccaac cttgatcacg gcgaccctga atggtaaact 851 ggtgatgaat gaaaaggtca tggcacagca tggagtacca ccgaaattct 901 ttccgtacgc gattgactgc gttcgtccga cgtacgatct gttcaataac 951 gacgcaatac tagcatggaa tttagctaga cagcaggcgt ttagaaataa 1001 gacggtgacg gccgataaca ccttacacaa cgtcttccaa ctattgcaga 1051 agaaatagtt acgatcgatg tccataaatc ggtgaaaaat ttagaaatat 1101 ttacctttta ttgataattc atgggggctt atacacacat agactttcat 1151 gagtcgcgat tgctggtaga caagcaagac tatctttctt tcaagtcagc 1201 aggtgaagct cctcctgatc ctcccgggta cgttcgccca gatagttata 1251 cgagggctta tttgatacaa agagctgact ttcctcgaat tgaaaactta 1301 tcagttacgt tatcgatagc cagtaataag ttagcttcag gtcttatggg 1351 aagcgacgca gtatcgtcgt cgtttatgct gatgaatgac gggggagatt 1401 acttcgagtg cggtgtgtgt cataacaaac cgtacttagg acgggaagtc 1451 gtcttctgta agaaatacat aggtgggaga ggagtggaga tcaccactgg 1501 taagaactac tcgtcgaaca actggaacga gtcgtcgtac gtattacatg 1551 tgaatatagt cggtgggacg gcacagacct cagttaattc tacttatacg 1601 caaacggacg ttagtggtct acccaaaaac tggacgcgta tctacaagat 1651 aacgaagata gtgtccgtag atcagaacct ctaccctggt tgtttctcaa 1701 gctcgaaact gaatgtaatg cttataaggt cactggtagt ttccccagta 1751 cgcaccttct ttagggtcgt cttattgaaa cctttgagga aatcgttcaa 1801 cgctagagtc gaggatgtgt taagcatcga cgatgcgacg ttgttagcgc 1851 caagtccagt agcaccagcg cctacggaag gtgtaggtcc atcagagcaa 1901 ctagacgtag tggctttaac gtctgacgta acggaattga tcaacaccag 1951 ggggcagggc aagataagtt ttcccgactc agtgttatcg atcaatgaag 2001 cggatatcta cgacgagcgg tatttaccga ttacggaagc tctacagata 2051 aacgcaaggc tacgcagact cgttctttcg aaaggcggga gtcaaacacc 2101 acgagatatg gggaacatga tagtggccat gatacaactt ttcgtactct 2151 actctactgt aaagaatata agcgtcaaag atgggtatag ggtggagacc 2201 gaattaggtc aaaagaaggt ctacttgagt tattcggaag taagggaagc 2251 tatattagga gggaaatacg acgcgtctcc aaccaacact gtgcgatcct 2301 ttatgaggta ttttactcac accactatta cgctacttat agagaagaaa 2351 attcagccag cgtacactgc cctagctaag cacggcgtcc cgaagaggtt 2401 cactccgtac tgcttcgact tcgcactact ggataataga tattacccgg 2451 cagacgtgtt gaaggctaac gcaatggctt gcgctgtagc gattaaagcg 2501 gctaatttga ggcgtaaagg ttcggagacg tataacatct tagaaagtat 2551 ttgataatct agagatggaa ttcagaccag ttttaattac ggttcgtcgt 2601 gatcccggtg taaacactgg tagtttgaaa gtgatggctt atgacttaca 2651 ctacgacaac atattcgaca attgtgtggt aaagtcattt cgagacactg 2701 acactggatt caccgttatg aaagagtatt cgacgaattc agcgtttata 2751 ctaagtcctt ataaactgtt ttccgcggtt tttaataagg aaggtgagat 2801 gataagtaac gatgtaggat cgagtttcag ggtttacaac atcttttcgc 2851 aaatgtgtaa agatatcaac gagatcagcg agatacaacg tgctggttac 2901 ctagaaacat acttaggaga cgggcaagcc gacaccgaca tatttttcga 2951 cgtcttaacc aataacaaaa cgaagataag gtggttagtt aataaagacc 3001 atagcgcgtg gtgcgggata ttgaatgatt tgaagtggga agagagcaac 3051 aaggaaaaat ttaaggggag agacatatta gatacctaca tcttatcgtc 3101 tgattaccca gggtttaaat gaggttactt tcgctccgct atcttatctt 3151 gaggttgtca aagtcgctta aaacgaacga tcacctggtt ttgatactta 3201 taaaggaagc gcttataaac tattacaacg cctcttttac cgatgagagt 3251 gccgtactaa gcgactctcg cgaaagtata gggaattttc tcatagccag 3301 gtgtagttcg caaaactcct gccgcgtcat gaaggccttg atcactaata 3351 tagtctgtaa ggcgacgata gaaacagcta gaagctttat cggagactta 3401 atactcgtcg ctgactcttc tatctcagcg ttggaggaag cgaaatcaat 3451 tagagataat ttccgcttaa gaaaaaggag aggcaagtat ttttatagtg 3501 gtgattgtgg atccgacgtt gcgaaagtta ggtatatttt gtcaggggag 3551 aatcgaggat tagggtacac agattccttg aaactagcct gcgtaggtag 3601 agaaggaggt ggaaacatac tacagcactt actaatctca tctctaggtt 3651 aaagcatcat ggacctatcg tttattatcg tgcagatcct ttccgccttg 3701 tacaataatg acgtgacagc cctgtacatc ttgatcaacg cgtacaaaaa 3751 cgttgacgat acgacgcgct gggcagcgat gggcgatccg cgagctgagg 3801 ttgacgttgt aaaggcttac gtaactacta cagcgacgac tgagctgcat 3851 agaacaattc ttattgacag tatagactcc gccttcgctt acgaccaagt 3901 ggggtgtttg gtgggcatag ctagaggttt gcttaaacat tcagaagatg 3951 ttctggaagt catcaagtcg atggagttat tcgaagtgtg tcgtggaaag 4001 aggggaagta aaaaatatct tggatactta agtgatcaat gctctggcaa 4051 acatataatg ctaactcaga ccggactgac cgcagttgag gaagcagaca 4101 tactacgaac gaattatcta gtcagtggta atgggtatat ttcaaactgt 4151 gggatcgcta ggatgttgat cttgacgctt tgttgcggag tgctgtagaa 4201 atgttgtgtt gttcagccgt tgtcaaatct tcaatcgggt tacggttaac 4251 gttacttatt tgcgcatttt tgttagcggt gctagttgtc agcttttgta 4301 gaaggcgatg aggcacttag aaaaacccat aagagtagcg gtacactatt 4351 gcgtcgtgcg aagtgacgtt tgtgacgggt gggatgtatt tataggcgta 4401 acgttaatcg ctatgtttat tagttactat ttgtacgctc taattggcat 4451 atgtagaaaa agagaaggtt taacaaccag taatgggtaa aattccttca 4501 ataaatttaa aataaagaaa agtaagaaaa atgaaataat taggctagtc 4551 tttttgttcg tttttcgttt ttgtagaata ggttttattt cgaggtaaga 4601 tgactaaact ctacctcacg gtttaatact ctgatatttg taaaattagt 4651 ccgtaaagtc gatagtgata ttatattagt atagtataat aaacgccaaa 4701 atccaatcaa a