Sequence of DPV Tuber aestivum virus 1

Tuber aestivum virus 1 capsid protein and RNA polymerase genes, complete cds.

ACC No: HQ158596

Dated: 2010-11-24 | Length: 4587 | CRC: 1433687698

                
ID   HQ158596; SV 1; linear; genomic RNA; STD; VRL; 4587 BP.
XX
AC   HQ158596;
XX
DT   24-NOV-2010 (Rel. 106, Created)
DT   24-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Tuber aestivum virus 1 capsid protein and RNA polymerase genes, complete
DE   cds.
XX
KW   .
XX
OS   Tuber aestivum virus 1
OC   Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN   [1]
RP   1-4587
RA   Stielow B., Menzel W.;
RT   "Complete nucleotide sequence of TaV1, a novel totivirus isolated from a
RT   black truffle ascocarp (Tuber aestivum Vittad.)";
RL   Arch. Virol. 155(12):2075-2078(2010).
XX
RN   [2]
RP   1-4587
RA   Menzel W., Stielow B.;
RT   ;
RL   Submitted (18-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL   DSMZ-German Collection of Microorganisms and Cell Cultures GmbH,
RL   Inhoffenstrasse 7 B, Braunschweig 38124, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4587
FT                   /organism="Tuber aestivum virus 1"
FT                   /host="Tuber aestivum"
FT                   /isolate="Buekk"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:927810"
FT   CDS             31. .2076
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="ADQ54105.1"
FT                   /translation="MYKTFNSLSENAPVSTFETIQSRGTTSLMTRLRLNLAYDNLDFNR
FT                   VYSSKQDYTWLGKAAAFIVEAELSLDGIAKQYLTLDGAINFDNVLAELRTGAGLQTTNV
FT                   SNHSVSVSSWRWYDNHVTLLFNLLRLYVMADLQLKGPITTGSYPKYDDGHVEIDLNAGL
FT                   PLPDETIVWSWPGSKNSLNYPEWGNFTEYMPLNDEAYIDVGGLLPEEVKMVLMATGAWE
FT                   RQTNFKLDFPTPKLAERIYYRYPSKVTMIDDWLDGEIPDINFGLPNPKVVWNAIRKYVT
FT                   TNNLYNQFYSAAAIINQVMLTPLPDSAEGMSWLIHEAQVVLPKFGSVRGRYPFLLRGEG
FT                   ALIQAKALEDWTMLQTNPNLLFSTSMVTASLFNIGLAVRDSMLRGIANDSLSGVDTSLF
FT                   QQPELAWAAAVSLACGIDVPLNGMSNCYVYYPTLADSNVRLALPALIKTPRGYWIEGDS
FT                   IVIDGVPFVGSPYVLYPLAVYDFANPYSGAFALPKPIRRTRKGAVFTVIGAWMYSWVAR
FT                   LAGYDVHISVNGSNVDYYKYFASNENSWVHPLWNGISDEIEGVFVHAIVRRNKHFLDIP
FT                   DYTIPGNLTDVSVSVKILDRYVSDSSLTTKFRANYNVGSVTVPKSGIQVVTSGDLRKFW
FT                   GYVRRSQPGLTMVGMAQPAIMPQPKHQLVEIDQEPEVTSEMVNMIE"
FT   CDS             2169. .4556
FT                   /codon_start=1
FT                   /product="RNA polymerase"
FT                   /protein_id="ADQ54106.1"
FT                   /translation="MCAVSRHSSTHMLVDVIPCSQLGLGAVYYHTEVAVRVYGEARYCR
FT                   LFRLDDVYGCYMRTDAYTPCLGPVTKRLMSQVYSLVNSVCFNSCDISDYLSLTLGSTLQ
FT                   MPKIEWPVKHGIYERSKITATHHTHLRPQELEAVAEGMGGRTKFVYAVCLQRLLSIGVV
FT                   TEAVYSSFLAYIIGVEYNFALLLLRSTTVWSGTRGEEQLLSKLKSFASAIKASHSAKYQ
FT                   PLTQLFELTVLLNRGIGSVDWAGEKENRVNPNTVDLDPADVYKSSMTIFRKARKSGYKY
FT                   PKMHYDKFIESRWEWIPGGSVHSQYVDDDEYIYPGLYTRNKFITVNKMPSHHLQLFLSS
FT                   TPQIKAWTSTKYEWGKQRAIYGTDLRSTIITNFAMYRCEEVLLHLFPVGDQADVEKVHR
FT                   RISMMLDGYDSFCFDYDDFNSQHSLSSMQAVLLAYMDAFSDVMSPEQLQAMEWVILSVA
FT                   DMQALSPTDNEWYRLTGTLLSGWRLTTFMNTVLNWVYMDVAGVFNIDGVHDSVHNGDDV
FT                   MISISSIKAANLVMNKMHKVNARAQPTKCNVLSISEFLRIEHGMSGYDGLGAQYLSRSC
FT                   ATLVHSRVESKEPITATRLVEADLSRLKDYRSRCANVDAVDLIQQQLFCRTAKLFNIEL
FT                   GNIYKISELHRVVGGCSDRRWAPIEQQVTTTSGKYEIPHEIDDPSFWPGVNDYSAMLYR
FT                   KIGEQVKMSVIVDAVSQGSRLTIAKSRSVTLAVERTANIKAKEWERALYRTYKGSTVHY
FT                   YANLAKFLNVPPLFGIETRGGASAISAALASSDTMRALKVLL"
XX
SQ   Sequence 4587 BP; 1356 A; 847 C; 1099 G; 1285 T; 0 other;

hq158596 Length: 4587  24-NOV-2010  Type: N  Check: 8706  ..

       1  gaatttaatt taattcaccg ataatcccca atgtataaga cttttaactc
      51  tctcagtgaa aacgccccgg tttcaacctt tgaaaccatt caatcaagag
     101  gtactacctc gttgatgact agacttagac tcaacttggc ttacgacaac
     151  ttagacttca atagagtcta cagtagtaag caagactaca cctggctcgg
     201  taaagctgcg gcattcatcg tcgaggcaga gctgtcatta gacggtattg
     251  ccaaacagta tttaacttta gatggtgcca tcaattttga caacgtttta
     301  gctgaattac ggactggtgc aggtttgcag actactaatg tttcgaacca
     351  ttcagtctcg gtatcatctt ggagatggta cgataatcac gtaactttat
     401  tgtttaattt gttacgtttg tatgttatgg cagacctcca gctgaaaggt
     451  ccgatcacta cagggtcgta tcctaagtat gacgacggtc atgttgaaat
     501  cgacttgaac gcagggttac cactcccgga tgaaacgatt gtctggagtt
     551  ggcctggatc taagaattca ttgaactacc ctgaatgggg caacttcact
     601  gaatatatgc cattaaacga tgaggcatac attgatgtag gaggtttgtt
     651  acctgaagaa gtcaagatgg tgttaatggc taccggagct tgggaacgtc
     701  agactaattt taagctagac ttccctactc cgaaattagc cgagcgtatt
     751  tattaccgtt atccgtcgaa ggttactatg attgatgatt ggttggatgg
     801  cgagatacct gacattaact tcggattacc taaccctaag gttgtgtgga
     851  atgcgatccg taagtatgtt actaccaaca atttgtataa ccagttttat
     901  tcggcagccg cgattattaa tcaagtgatg ttgactccgt tacctgattc
     951  agctgaaggt atgtcttggt tgatccatga agctcaggta gtacttccta
    1001  agttcggatc agttagaggt agataccctt ttttgttacg tggagaaggt
    1051  gcgcttattc aagcgaaagc cttggaagat tggactatgt tacaaactaa
    1101  ccccaattta ttattttcaa ctagcatggt tactgcatct ttatttaata
    1151  tcgggttagc cgtaagggat tcaatgctgc gcgggatagc aaatgattct
    1201  ttatcgggag ttgataccag cttattccaa caaccagaac tggcatgggc
    1251  agccgcagtg tctctcgcgt gtggaattga tgtccctttg aacggaatga
    1301  gtaactgcta tgtatattac ccaacattag ctgactctaa tgtgaggtta
    1351  gcgttaccgg cgttaatcaa gactcctaga ggttactgga ttgaaggaga
    1401  tagtatcgtg attgacggtg tcccattcgt tgggtcacca tatgtgttat
    1451  atccgttagc agtgtacgat tttgcaaatc cttattctgg tgcctttgcg
    1501  ctcccgaaac ctattaggcg tactagaaaa ggagctgtgt ttacagtaat
    1551  cggtgcctgg atgtacagtt gggtagctag actagcaggt tatgatgtcc
    1601  acatttcagt taatggcagc aatgtagatt attataagta tttcgcgtcg
    1651  aatgagaaca gttgggtaca tccattgtgg aacggtattt ctgatgaaat
    1701  agaaggagta ttcgttcacg cgatagtccg ccgtaacaaa cactttttag
    1751  acataccaga ttacactatt ccagggaatt tgactgacgt cagtgtttcc
    1801  gttaaaatat tagataggta tgtgtctgac tcaagcttaa caactaagtt
    1851  cagggcgaac tacaatgtag gatcagtcac tgtacctaaa agtgggattc
    1901  aagtagttac tagtggagat ttaagaaagt tctggggtta tgtccgtaga
    1951  tcacagccgg gtttaacgat ggtaggcatg gctcaaccag cgatcatgcc
    2001  gcaaccaaaa caccagctgg tagaaataga tcaggaaccc gaagtaacat
    2051  cagagatggt caatatgata gaataagctt gtatgaatgt gaacacggtg
    2101  ccaaaccgag aagatactta agttaccagc ctaacagctt accgacgtgg
    2151  gtgtcgttta agaatcgcat gtgcgcggta tctaggcatt catcaactca
    2201  tatgttagta gatgtgatac cttgctctca gttaggctta ggggcagtat
    2251  actaccacac tgaagtggcg gtacgagtat atggggaggc gaggtattgt
    2301  agattgttta gactagatga cgtctacggt tgttatatga gaactgatgc
    2351  atatacgcct tgcttagggc cagtgactaa acgactgatg tctcaagttt
    2401  acagtttggt gaatagcgtg tgttttaata gttgcgacat atctgattat
    2451  ttgtcattga cgttagggtc tactttacaa atgcctaaaa tagaatggcc
    2501  ggttaagcac gggatctacg aaaggtcaaa gatcacggcc acacatcata
    2551  cacatttaag gcctcaagaa ctagaagctg tagctgaggg tatgggcggt
    2601  agaactaagt tcgtatacgc ggtttgcttg cagcgtttac tgtcgatagg
    2651  cgttgttaca gaagccgttt actcttcatt cttagcgtac atcataggag
    2701  tagagtataa cttcgctcta ctattattac gtagtacgac agtgtggtca
    2751  ggaacgaggg gggaagagca gttactatca aaattaaaat cattcgcgtc
    2801  agctataaaa gcaagtcatt cagccaagta tcaaccctta actcagttgt
    2851  ttgagctaac cgttttgcta aatagaggta taggttcagt tgattgggct
    2901  ggcgaaaagg aaaatcgggt taatcctaat accgtagact tagacccggc
    2951  ggatgtgtat aagtcatcaa tgacaatatt tcggaaggcc agaaagtcag
    3001  ggtacaaata tcctaagatg cactacgata aattcataga gtcaagatgg
    3051  gaatggatac ctggagggag cgtgcattca caatatgtag atgatgacga
    3101  atatatttac ccaggtttat atactaggaa taaatttatt acagtaaaca
    3151  agatgccttc acatcacttg caactgtttt tgagttcaac gccacagatt
    3201  aaggcttgga catcaactaa gtacgaatgg ggcaagcaga gagctatata
    3251  cggtacagat ttgaggagta ctataattac gaactttgca atgtacagat
    3301  gtgaagaagt gttgctgcac ttgttccctg ttggtgatca agcagacgtg
    3351  gaaaaagttc acaggcggat atctatgatg ctagacggtt acgacagctt
    3401  ctgcttcgat tatgatgact tcaactctca acattcatta agcagtatgc
    3451  aagcagtttt actggcgtat atggatgctt tctcagacgt aatgagccca
    3501  gaacagctac aagctatgga atgggtgata ctatcagtag cggacatgca
    3551  ggccttgtca cccaccgaca atgagtggta taggctaacc ggtacgttat
    3601  tgtcgggatg gcgtcttacc acattcatga acactgtatt gaattgggtg
    3651  tacatggacg ttgcaggtgt gttcaatata gacggggttc atgattcggt
    3701  gcacaacggt gacgacgtta tgataagtat atcaagcatt aaggcagcga
    3751  acttggtcat gaataaaatg cataaggtta acgcaagggc acaaccaaca
    3801  aagtgcaatg tattatcaat ttcggaattt ttaaggatag aacatggtat
    3851  gtcagggtac gatgggctag gagcacaata tttgtcgcgt tcgtgcgcta
    3901  cgctagtaca tagtagagta gaatctaaag agccaataac agcgacaaga
    3951  ttagtggaag cggatttatc gcggcttaaa gattaccggt caagatgtgc
    4001  gaacgtcgat gcagttgatc taatccagca acagttgttc tgcagaacag
    4051  ccaagttgtt taatatcgaa ctagggaaca tatataaaat atctgaatta
    4101  cacagagtag tgggcggttg tagtgaccgc aggtgggcgc ctattgaaca
    4151  acaagtcact acaacaagcg ggaaatacga gatacctcat gaaatagacg
    4201  atccgtcatt ttggccaggt gtcaacgatt attccgctat gctatatcgt
    4251  aagataggtg agcaagttaa aatgtcggta atagtagacg cagtgagtca
    4301  ggggtcaagg ttaactattg ccaagtctag gtccgtcaca ctagcagttg
    4351  aacggacagc gaatataaag gccaaagagt gggaaagagc attgtatagg
    4401  acttacaaag gaagtacagt acattattat gctaatttag caaaattttt
    4451  gaatgtaccg ccattattcg gcattgagac tagaggcggg gcaagcgcaa
    4501  tatcagccgc gcttgcaagc agtgatacta tgagagcact aaaagtgttg
    4551  ttatagttag ctgctattga aggtagaaat accatat