Sequence of DPV Tuber aestivum virus 1
Tuber aestivum virus 1 capsid protein and RNA polymerase genes, complete cds.
ACC No: HQ158596
Dated: 2010-11-24 | Length: 4587 | CRC: 1433687698
ID HQ158596; SV 1; linear; genomic RNA; STD; VRL; 4587 BP. XX AC HQ158596; XX DT 24-NOV-2010 (Rel. 106, Created) DT 24-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Tuber aestivum virus 1 capsid protein and RNA polymerase genes, complete DE cds. XX KW . XX OS Tuber aestivum virus 1 OC Viruses; dsRNA viruses; Totiviridae; Totivirus. XX RN [1] RP 1-4587 RA Stielow B., Menzel W.; RT "Complete nucleotide sequence of TaV1, a novel totivirus isolated from a RT black truffle ascocarp (Tuber aestivum Vittad.)"; RL Arch. Virol. 155(12):2075-2078(2010). XX RN [2] RP 1-4587 RA Menzel W., Stielow B.; RT ; RL Submitted (18-AUG-2010) to the EMBL/GenBank/DDBJ databases. RL DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, RL Inhoffenstrasse 7 B, Braunschweig 38124, Germany XX FH Key Location/Qualifiers FH FT source 1. .4587 FT /organism="Tuber aestivum virus 1" FT /host="Tuber aestivum" FT /isolate="Buekk" FT /mol_type="genomic RNA" FT /country="Hungary" FT /collection_date="2009" FT /db_xref="taxon:927810" FT CDS 31. .2076 FT /codon_start=1 FT /product="capsid protein" FT /protein_id="ADQ54105.1" FT /translation="MYKTFNSLSENAPVSTFETIQSRGTTSLMTRLRLNLAYDNLDFNR FT VYSSKQDYTWLGKAAAFIVEAELSLDGIAKQYLTLDGAINFDNVLAELRTGAGLQTTNV FT SNHSVSVSSWRWYDNHVTLLFNLLRLYVMADLQLKGPITTGSYPKYDDGHVEIDLNAGL FT PLPDETIVWSWPGSKNSLNYPEWGNFTEYMPLNDEAYIDVGGLLPEEVKMVLMATGAWE FT RQTNFKLDFPTPKLAERIYYRYPSKVTMIDDWLDGEIPDINFGLPNPKVVWNAIRKYVT FT TNNLYNQFYSAAAIINQVMLTPLPDSAEGMSWLIHEAQVVLPKFGSVRGRYPFLLRGEG FT ALIQAKALEDWTMLQTNPNLLFSTSMVTASLFNIGLAVRDSMLRGIANDSLSGVDTSLF FT QQPELAWAAAVSLACGIDVPLNGMSNCYVYYPTLADSNVRLALPALIKTPRGYWIEGDS FT IVIDGVPFVGSPYVLYPLAVYDFANPYSGAFALPKPIRRTRKGAVFTVIGAWMYSWVAR FT LAGYDVHISVNGSNVDYYKYFASNENSWVHPLWNGISDEIEGVFVHAIVRRNKHFLDIP FT DYTIPGNLTDVSVSVKILDRYVSDSSLTTKFRANYNVGSVTVPKSGIQVVTSGDLRKFW FT GYVRRSQPGLTMVGMAQPAIMPQPKHQLVEIDQEPEVTSEMVNMIE" FT CDS 2169. .4556 FT /codon_start=1 FT /product="RNA polymerase" FT /protein_id="ADQ54106.1" FT /translation="MCAVSRHSSTHMLVDVIPCSQLGLGAVYYHTEVAVRVYGEARYCR FT LFRLDDVYGCYMRTDAYTPCLGPVTKRLMSQVYSLVNSVCFNSCDISDYLSLTLGSTLQ FT MPKIEWPVKHGIYERSKITATHHTHLRPQELEAVAEGMGGRTKFVYAVCLQRLLSIGVV FT TEAVYSSFLAYIIGVEYNFALLLLRSTTVWSGTRGEEQLLSKLKSFASAIKASHSAKYQ FT PLTQLFELTVLLNRGIGSVDWAGEKENRVNPNTVDLDPADVYKSSMTIFRKARKSGYKY FT PKMHYDKFIESRWEWIPGGSVHSQYVDDDEYIYPGLYTRNKFITVNKMPSHHLQLFLSS FT TPQIKAWTSTKYEWGKQRAIYGTDLRSTIITNFAMYRCEEVLLHLFPVGDQADVEKVHR FT RISMMLDGYDSFCFDYDDFNSQHSLSSMQAVLLAYMDAFSDVMSPEQLQAMEWVILSVA FT DMQALSPTDNEWYRLTGTLLSGWRLTTFMNTVLNWVYMDVAGVFNIDGVHDSVHNGDDV FT MISISSIKAANLVMNKMHKVNARAQPTKCNVLSISEFLRIEHGMSGYDGLGAQYLSRSC FT ATLVHSRVESKEPITATRLVEADLSRLKDYRSRCANVDAVDLIQQQLFCRTAKLFNIEL FT GNIYKISELHRVVGGCSDRRWAPIEQQVTTTSGKYEIPHEIDDPSFWPGVNDYSAMLYR FT KIGEQVKMSVIVDAVSQGSRLTIAKSRSVTLAVERTANIKAKEWERALYRTYKGSTVHY FT YANLAKFLNVPPLFGIETRGGASAISAALASSDTMRALKVLL" XX SQ Sequence 4587 BP; 1356 A; 847 C; 1099 G; 1285 T; 0 other; hq158596 Length: 4587 24-NOV-2010 Type: N Check: 8706 .. 1 gaatttaatt taattcaccg ataatcccca atgtataaga cttttaactc 51 tctcagtgaa aacgccccgg tttcaacctt tgaaaccatt caatcaagag 101 gtactacctc gttgatgact agacttagac tcaacttggc ttacgacaac 151 ttagacttca atagagtcta cagtagtaag caagactaca cctggctcgg 201 taaagctgcg gcattcatcg tcgaggcaga gctgtcatta gacggtattg 251 ccaaacagta tttaacttta gatggtgcca tcaattttga caacgtttta 301 gctgaattac ggactggtgc aggtttgcag actactaatg tttcgaacca 351 ttcagtctcg gtatcatctt ggagatggta cgataatcac gtaactttat 401 tgtttaattt gttacgtttg tatgttatgg cagacctcca gctgaaaggt 451 ccgatcacta cagggtcgta tcctaagtat gacgacggtc atgttgaaat 501 cgacttgaac gcagggttac cactcccgga tgaaacgatt gtctggagtt 551 ggcctggatc taagaattca ttgaactacc ctgaatgggg caacttcact 601 gaatatatgc cattaaacga tgaggcatac attgatgtag gaggtttgtt 651 acctgaagaa gtcaagatgg tgttaatggc taccggagct tgggaacgtc 701 agactaattt taagctagac ttccctactc cgaaattagc cgagcgtatt 751 tattaccgtt atccgtcgaa ggttactatg attgatgatt ggttggatgg 801 cgagatacct gacattaact tcggattacc taaccctaag gttgtgtgga 851 atgcgatccg taagtatgtt actaccaaca atttgtataa ccagttttat 901 tcggcagccg cgattattaa tcaagtgatg ttgactccgt tacctgattc 951 agctgaaggt atgtcttggt tgatccatga agctcaggta gtacttccta 1001 agttcggatc agttagaggt agataccctt ttttgttacg tggagaaggt 1051 gcgcttattc aagcgaaagc cttggaagat tggactatgt tacaaactaa 1101 ccccaattta ttattttcaa ctagcatggt tactgcatct ttatttaata 1151 tcgggttagc cgtaagggat tcaatgctgc gcgggatagc aaatgattct 1201 ttatcgggag ttgataccag cttattccaa caaccagaac tggcatgggc 1251 agccgcagtg tctctcgcgt gtggaattga tgtccctttg aacggaatga 1301 gtaactgcta tgtatattac ccaacattag ctgactctaa tgtgaggtta 1351 gcgttaccgg cgttaatcaa gactcctaga ggttactgga ttgaaggaga 1401 tagtatcgtg attgacggtg tcccattcgt tgggtcacca tatgtgttat 1451 atccgttagc agtgtacgat tttgcaaatc cttattctgg tgcctttgcg 1501 ctcccgaaac ctattaggcg tactagaaaa ggagctgtgt ttacagtaat 1551 cggtgcctgg atgtacagtt gggtagctag actagcaggt tatgatgtcc 1601 acatttcagt taatggcagc aatgtagatt attataagta tttcgcgtcg 1651 aatgagaaca gttgggtaca tccattgtgg aacggtattt ctgatgaaat 1701 agaaggagta ttcgttcacg cgatagtccg ccgtaacaaa cactttttag 1751 acataccaga ttacactatt ccagggaatt tgactgacgt cagtgtttcc 1801 gttaaaatat tagataggta tgtgtctgac tcaagcttaa caactaagtt 1851 cagggcgaac tacaatgtag gatcagtcac tgtacctaaa agtgggattc 1901 aagtagttac tagtggagat ttaagaaagt tctggggtta tgtccgtaga 1951 tcacagccgg gtttaacgat ggtaggcatg gctcaaccag cgatcatgcc 2001 gcaaccaaaa caccagctgg tagaaataga tcaggaaccc gaagtaacat 2051 cagagatggt caatatgata gaataagctt gtatgaatgt gaacacggtg 2101 ccaaaccgag aagatactta agttaccagc ctaacagctt accgacgtgg 2151 gtgtcgttta agaatcgcat gtgcgcggta tctaggcatt catcaactca 2201 tatgttagta gatgtgatac cttgctctca gttaggctta ggggcagtat 2251 actaccacac tgaagtggcg gtacgagtat atggggaggc gaggtattgt 2301 agattgttta gactagatga cgtctacggt tgttatatga gaactgatgc 2351 atatacgcct tgcttagggc cagtgactaa acgactgatg tctcaagttt 2401 acagtttggt gaatagcgtg tgttttaata gttgcgacat atctgattat 2451 ttgtcattga cgttagggtc tactttacaa atgcctaaaa tagaatggcc 2501 ggttaagcac gggatctacg aaaggtcaaa gatcacggcc acacatcata 2551 cacatttaag gcctcaagaa ctagaagctg tagctgaggg tatgggcggt 2601 agaactaagt tcgtatacgc ggtttgcttg cagcgtttac tgtcgatagg 2651 cgttgttaca gaagccgttt actcttcatt cttagcgtac atcataggag 2701 tagagtataa cttcgctcta ctattattac gtagtacgac agtgtggtca 2751 ggaacgaggg gggaagagca gttactatca aaattaaaat cattcgcgtc 2801 agctataaaa gcaagtcatt cagccaagta tcaaccctta actcagttgt 2851 ttgagctaac cgttttgcta aatagaggta taggttcagt tgattgggct 2901 ggcgaaaagg aaaatcgggt taatcctaat accgtagact tagacccggc 2951 ggatgtgtat aagtcatcaa tgacaatatt tcggaaggcc agaaagtcag 3001 ggtacaaata tcctaagatg cactacgata aattcataga gtcaagatgg 3051 gaatggatac ctggagggag cgtgcattca caatatgtag atgatgacga 3101 atatatttac ccaggtttat atactaggaa taaatttatt acagtaaaca 3151 agatgccttc acatcacttg caactgtttt tgagttcaac gccacagatt 3201 aaggcttgga catcaactaa gtacgaatgg ggcaagcaga gagctatata 3251 cggtacagat ttgaggagta ctataattac gaactttgca atgtacagat 3301 gtgaagaagt gttgctgcac ttgttccctg ttggtgatca agcagacgtg 3351 gaaaaagttc acaggcggat atctatgatg ctagacggtt acgacagctt 3401 ctgcttcgat tatgatgact tcaactctca acattcatta agcagtatgc 3451 aagcagtttt actggcgtat atggatgctt tctcagacgt aatgagccca 3501 gaacagctac aagctatgga atgggtgata ctatcagtag cggacatgca 3551 ggccttgtca cccaccgaca atgagtggta taggctaacc ggtacgttat 3601 tgtcgggatg gcgtcttacc acattcatga acactgtatt gaattgggtg 3651 tacatggacg ttgcaggtgt gttcaatata gacggggttc atgattcggt 3701 gcacaacggt gacgacgtta tgataagtat atcaagcatt aaggcagcga 3751 acttggtcat gaataaaatg cataaggtta acgcaagggc acaaccaaca 3801 aagtgcaatg tattatcaat ttcggaattt ttaaggatag aacatggtat 3851 gtcagggtac gatgggctag gagcacaata tttgtcgcgt tcgtgcgcta 3901 cgctagtaca tagtagagta gaatctaaag agccaataac agcgacaaga 3951 ttagtggaag cggatttatc gcggcttaaa gattaccggt caagatgtgc 4001 gaacgtcgat gcagttgatc taatccagca acagttgttc tgcagaacag 4051 ccaagttgtt taatatcgaa ctagggaaca tatataaaat atctgaatta 4101 cacagagtag tgggcggttg tagtgaccgc aggtgggcgc ctattgaaca 4151 acaagtcact acaacaagcg ggaaatacga gatacctcat gaaatagacg 4201 atccgtcatt ttggccaggt gtcaacgatt attccgctat gctatatcgt 4251 aagataggtg agcaagttaa aatgtcggta atagtagacg cagtgagtca 4301 ggggtcaagg ttaactattg ccaagtctag gtccgtcaca ctagcagttg 4351 aacggacagc gaatataaag gccaaagagt gggaaagagc attgtatagg 4401 acttacaaag gaagtacagt acattattat gctaatttag caaaattttt 4451 gaatgtaccg ccattattcg gcattgagac tagaggcggg gcaagcgcaa 4501 tatcagccgc gcttgcaagc agtgatacta tgagagcact aaaagtgttg 4551 ttatagttag ctgctattga aggtagaaat accatat