Sequence of DPV Radish leaf curl virus
Radish leaf curl virus-Hajipur [IN:Bih06:10] segment DNA-A, complete sequence.
ACC No: HQ257375
Dated: 2013-04-26 | Length: 2752 | CRC: -415366418
ID HQ257375; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
XX
AC HQ257375;
XX
DT 16-MAR-2011 (Rel. 108, Created)
DT 26-APR-2013 (Rel. 116, Last updated, Version 2)
XX
DE Radish leaf curl virus-Hajipur [IN:Bih06:10] segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Radish leaf curl virus-Hajipur [IN:Bih06:10]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2752
RA Kumar J., Roy J.K., Tuli R.;
RT "Radish leaf curl virus infecting okra in India";
RL Unpublished.
XX
RN [2]
RP 1-2752
RA Kumar J., Roy J.K., Tuli R.;
RT ;
RL Submitted (12-SEP-2010) to the INSDC.
RL Agri-Biotechnology, National Agri-Food Biotechnology Institute, C-127,
RL Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab 160071, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2752
FT /organism="Radish leaf curl virus-Hajipur [IN:Bih06:10]"
FT /segment="DNA-A"
FT /host="okra"
FT /isolate="IN:Bih06:10"
FT /mol_type="genomic DNA"
FT /country="India"
FT /isolation_source="leaf tissue"
FT /collection_date="Sep-2009"
FT /db_xref="taxon:1325579"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="movement/precoat protein"
FT /db_xref="GOA:D5L0V3"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="UniProtKB/TrEMBL:D5L0V3"
FT /protein_id="ADZ45280.1"
FT /translation="MWDPLLNEFPETVHGFGCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARFEGTSRLNFDSPYVRRAAAPIVRVTKAKAWANRPMDR
FT KPRMYRMYRSPDVP"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:D5L0V4"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D5L0V4"
FT /protein_id="ADZ45281.1"
FT /translation="MSKRPADIIISTPASKVRRVSTSTAHMCAVLLPPLSASPKQKHGR
FT TDPWTESPGCTGCTEVQMFRRGCEGPCKVQSLSPDMIFSIYGKVMCVSDATRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMARTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1074. .1481)
FT /gene="AC3"
FT CDS complement(1074. .1481)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:D5L0V5"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D5L0V5"
FT /protein_id="ADZ45282.1"
FT /translation="MDSRTGELITATQAESGVYIWTVKNPLYFKISQHHERPFLSNNDI
FT LTIQVQFNYNLRKALGIHQCFLRIWTRLSRPHSLRLVVSSGSLRPKCLSIYITSELSVL
FT IMYWSSCSCIMECIRACVYVDQSSSIKFNIY"
FT gene complement(1217. .1621)
FT /gene="AC2"
FT CDS complement(1217. .1621)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /db_xref="GOA:D5L0V6"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:D5L0V6"
FT /protein_id="ADZ45283.1"
FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPVRIRSSLRLLLLFWTCLR
FT ITWIHAQGNSSLQLRQRVACIFGRSKIPSISRYPNTTRDHFYPTTTYSPYKSSSTTTCG
FT KRWGYTSVFYESGLVCLDLTASDWSFLPGL"
FT gene complement(1530. .2606)
FT /gene="AC1"
FT CDS complement(1530. .2606)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /db_xref="GOA:F2WUB0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:F2WUB0"
FT /protein_id="ADZ45284.1"
FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK
FT ICRELHENGEPHLRVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM
FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRIIKELAPKDYVLQFH
FT NLNANLDRIYTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARANRPISVVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW
FT LSNTTGSPCKIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWALKNAEFFTLTEPLY
FT SGTHQSPAQNSQEETSSH"
FT gene complement(2147. .2455)
FT /gene="AC4"
FT CDS complement(2147. .2455)
FT /codon_start=1
FT /gene="AC4"
FT /product="transcriptional regulator protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A9XCM0"
FT /protein_id="ADZ45285.1"
FT /translation="MKMGNLIFACSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN
FT QAPMSSPIWRRTETPSTGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS"
XX
SQ Sequence 2752 BP; 738 A; 547 C; 651 G; 816 T; 0 other;
hq257375 Length: 2752 26-APR-2013 Type: N Check: 1033 ..
1 accggatggc cgcgattttt tttgtggccc ccacaaagca ctaactgaca
51 atgacatgtg gtccaatgag aatcgttcct cgtagcctaa ttgtttgtgt
101 ggtcccctct ataaacttag tgcgcaagtt gtgttttcca ttcaatatgt
151 gggatccgtt attgaatgag tttcccgaaa ccgttcacgg ttttgggtgt
201 atgttagcag ttaaatatct gcagttagta gaaaatacgt attccccaga
251 tactctggga tacgatttaa ttagggattt gatttcagta ataagggcca
301 ggaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcttc
351 gaaggtacgt cgcgtctcaa cttcgacagc ccatatgtgc gccgtgctgc
401 tgcccccatt gtccgcgtca ccaaagcaaa agcatgggcg aacagaccca
451 tggacagaaa gcccaggatg tacaggatgt acagaagtcc agatgttccg
501 tagaggatgt gaaggcccat gtaaggttca gtccttgagt ccagacatga
551 tattcagcat atacggtaaa gtcatgtgtg tcagtgatgc tactcgtgga
601 actgggctta cccatagagt gggtaagaga ttttgtgtga agtctgtgta
651 tgttttgggt aagatatgga tggatgagaa cattaagacc aagaatcaca
701 cgaatagtgt gatgtttttc ttagttagag atcgtagacc agttgataaa
751 cctcaagatt ttggagaggt gtttaacatg tttgataatg agcccagtac
801 ggcgactgtg aagaatgttc atcgtgatag gtatcaagtg ctgcgcaaat
851 ggtatgcaac tgtcaccggt ggacaatacg cttcaaagga acaagctctc
901 gtgaagaagt ttattagggt taataattat gttgtgtata accagcaaga
951 agctggcaag tatgagaatc attctgagaa tgctttaatg ttgtatatgg
1001 cgcgtactca cgcctctaac ccagtgtatg ctactttgaa aatacggatc
1051 tacttctatg attccgtgac aaattaataa atattgaatt ttattgaaga
1101 tgattggtct acatatacac atgctctaat acattccata atacatgagc
1151 aactgctcca atacattatt aatactgaca attccgaagt tatgtaaata
1201 cttaagcact tgggtcttaa agacccggaa gaaacgacca atcggaggct
1251 gtgaggtcga gacagacgag tccagattcg tagaaaacac tggtgtatcc
1301 ccaacgcttt ccgcaggttg tagttgaact ggacttgtat ggtgagtatg
1351 tcgttgttgg atagaaatgg tctctcgtgg tgttgggata tcttgaaata
1401 gaggggattt ttgaccgtcc aaatatacac gccactctct gcctgagttg
1451 cagtgatgag ttcccctgtg cgtgaatcca tgtgatgcgc aggcaagtcc
1501 aaaatagtaa gagcaaccgc agggaagatc taatgcgaac tggtctcttc
1551 ttggctattc tgtgctggac tttgatgggt acctgagtac aacggctcgg
1601 tgagggtgaa gaattctgca ttctttaatg cccagtcttt tagtgctgaa
1651 ttcttttcct catccaagta ctctttatat gatgatgtcg ggcctggatt
1701 gcagaggaag atagtgggaa tcccaccttt aattttgcat gggcttcccg
1751 tagtatttga aagccagtcc ctttgggccc ccatgaattc tttaaagtgc
1801 tttaggtagt ggggatcgac gtcatcaatg atattgtacc aggcatcatt
1851 attgtagacc ttagggctaa ggtctagatg tccacacaaa taattatgtg
1901 gtcccagtga cctagcccac attgtcttcc ctgtcctact atcaccctca
1951 atcactacac ttattggtct attggcccgc gcagcggcac tgacgacgtt
2001 ctcggcagcc cattcctcaa gttcttccgg aacttgatca aaagaagaag
2051 aagaaaaagg agaaacataa acctccagag gaggtgtata aatcctatct
2101 aaattagcat ttaaattatg gaattgtaat acataatctt ttggagctaa
2151 ctccttaatg attctaagag cctctgactt actgcctgcg ttaagcgctg
2201 cggcgtaagc gtcgttggct gtctgttgtc cccctctagc agatcgtccg
2251 tcgatctgaa actctcccca gtcgagggtg tctccgtcct tctccatata
2301 ggacttgaca tcggagcttg atttagctcc ctgaatgttc ggatggaaat
2351 gtgctgacct ggttggggat acgaggtcga agaatctgtt atttttgcac
2401 ttgtatttgc cttcgaactg gatgagcacg cgaagatgag gttccccatt
2451 ttcatgaagc tctctgcaga ttttaatgta ttttttgttt actggggttt
2501 gtaggttttg tagttgggaa agtgcttcct ctttagtaag ggagcatttg
2551 ggataagtaa ggaaataatt tttggcatat atctgaaatt gtttgggagg
2601 agccattgac ttggtcaatc ggtacccaga actagtctta tggcaattgg
2651 tgaacggtac cctatatata gtgggtactg aatggcaata tttgtaatta
2701 tgaaagaaat tcaaaatcct cacgctccaa tcgcggccat ccgtataata
2751 tt