Sequence of DPV Citrus tristeza virus

Citrus tristeza virus clone 108 P20 gene, complete cds.

ACC No: HQ329214

Dated: 2010-12-29 | Length: 549 | CRC: -1977402942

                
ID   HQ329214; SV 1; linear; genomic RNA; STD; VRL; 549 BP.
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AC   HQ329214;
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DT   29-DEC-2010 (Rel. 107, Created)
DT   29-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Citrus tristeza virus clone 108 P20 gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-549
RA   Atta S.;
RT   "citrus tristeza virus from Pakistan";
RL   Unpublished.
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RN   [2]
RP   1-549
RA   Atta S.;
RT   ;
RL   Submitted (30-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Sequencing Lab, Shanghai Biosune Biotechnology Co. Ltd., Donglan Road No.
RL   248, 5th floor, Shanghai 201102, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .549
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus sinensis"
FT                   /mol_type="genomic RNA"
FT                   /country="Pakistan"
FT                   /collection_date="2008"
FT                   /clone="108"
FT                   /db_xref="taxon:12162"
FT   CDS             1. .549
FT                   /codon_start=1
FT                   /product="P20"
FT                   /protein_id="ADU02544.1"
FT                   /translation="MRAYFSVNDYISLLAKVGAVVERLYDPSVTLTEVMDEINDFNSFL
FT                   ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRILLDIIRRRFTRDKLLCTSATD
FT                   VMGFFVMRYMASSHISFESVMRTELKLVVKAVLSDLSRTHKLDFSERAFAAYGILLQKG
FT                   TVATVCGQFDINLVSPSCV"
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SQ   Sequence 549 BP; 143 A; 114 C; 131 G; 161 T; 0 other;

hq329214 Length: 549  29-DEC-2010  Type: N  Check: 3151  ..

       1  atgcgagctt actttagtgt taacgattac ataagccttt tggctaaggt
      51  cggcgcagtt gtggaacgtt tatacgatcc cagcgtaact ctcacggaag
     101  tgatggacga aattaatgat tttaactcgt ttctcgcttt agtacactct
     151  atgaagtcag acatgaacgg tgatcatcag gatggtcacc atgagatggg
     201  tgaacacaag tctcgattgt tgtgcaatat agaggcgaaa ctgcgaatac
     251  ttctcgacat cataagacgt cggtttactc gcgacaagct gctctgtacc
     301  agcgcaacag acgtcatggg cttcttcgtt atgaggtaca tggcttctag
     351  tcacatcagt ttcgaatccg taatgcgaac ggagctgaaa ttagtagtta
     401  aagcagtact atcggactta tcccgcacgc ataagctaga ttttagcgag
     451  cgagcctttg cggcttacgg tatcctttta caaaagggta ctgtagcgac
     501  cgtttgtggt cagtttgaca ttaatttagt ttctccatct tgcgtgtag