Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-PE[BR:PV:08], complete genome.
ACC No: HQ393456
Dated: 2012-11-14 | Length: 2829 | CRC: -50420291
ID HQ393456; SV 1; circular; genomic DNA; STD; VRL; 2829 BP.
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AC HQ393456;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-PE[BR:PV:08], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2829
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [2]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
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RN [3]
RP 1-2829
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2829
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="Pernambuco"
FT /isolate="SPLCV-PE[BR:PV:08]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Rondonia"
FT /lat_lon="9.55 S 63.25 W"
FT /collected_by="Joao Bosco Silva"
FT /collection_date="2008"
FT /clone="346Eco2"
FT /db_xref="taxon:100755"
FT CDS 98. .469
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96555.1"
FT /translation="MLFQSWSPSMADMWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYE
FT PGTLGFELCSELIRIFRVRQYDRANARYAEISSVWGETGKTEAELRDSYRALHWECCPN
FT CCPKLCPGFKRRPDEEKEG"
FT CDS 294. .1058
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96556.1"
FT /translation="MTGRMRVTQRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHRRTFVCYSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFDQVFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEANYENQLE
FT NALMLYSASSHASNPVYQTLRCRVYFYDSHNN"
FT CDS complement(1074. .1508)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96557.1"
FT /translation="MDSRTGESLSHAQTMRALEFDNNPMSAGRTAPFNLRIMYVHESTQ
FT GRTILKFQMRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNGLAN
FT IGFLSLVNLVFVIRYLPRVCSWIDEVDTIDCTDDVKVLLY"
FT CDS complement(1225. .1671)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96558.1"
FT /translation="MSNLPSGLKRKCPIQEPLHAEAKKVKRKVPETRTRIVWKGCGCSA
FT FITTTCKYQHGFTHRGITKSCSDYESTRIRQQPHVCGSDCPIQSPNNVCPREHTGENHP
FT QIPNEGQLQGKEATGIPQDLPPIQDLDDPTNWCYSQLDWYFGTP"
FT CDS complement(1580. .2674)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96559.1"
FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLAQLLHIQTPTNKKYIH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQYH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAKKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WTQEEVSHSGATARRGEEGQEESS"
FT CDS complement(2260. .2517)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96560.1"
FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPR
FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL"
XX
SQ Sequence 2829 BP; 745 A; 581 C; 678 G; 825 T; 0 other;
hq393456 Length: 2829 14-NOV-2012 Type: N Check: 1075 ..
1 accggtgccc gccgcgccct ttaaaagtgg gccccaccaa ttgacaacgc
51 gtcttttccg tactctcttt aatgatgaca ttgctttata aggaccaatg
101 ctgttccagt cttggtcgcc aagtatggct gatatgtggg accctttgca
151 gaacccacta ccagatactt tatacggttt taggtgtatg ctatccgtaa
201 aatacttgca aagtattttg aaaaaatacg agccaggaac cctagggttc
251 gaactctgtt cggagttaat ccgtatcttc agggtcagac agtatgacag
301 ggcgaatgcg cgttacgcag agatttcatc cgtatggggg gagaccggta
351 agacggaggc tgaacttcga gacagctatc gtgccctaca ctgggaatgc
401 tgtcccaatt gctgcccgaa gctatgtccc ggtttcaaga ggcgtccgga
451 tgaagagaaa gaggggtgac cgcatcccga agggatgtgt tggtccctgt
501 aaggtccagg actatgagtt caagatggac gttcctcaca ggcgaacgtt
551 tgtctgttac tcggatttta caagggggac tgggcttacc catcgccttg
601 gtaagcgtgt ttgtgttaag tcaatgggta tcgatgggaa ggtctggatg
651 gatgacaatg ttgcgaagag agatcacacc aatatcatca cgtattggtt
701 gattcgtgac aggaggccca ataaggatcc actgaacttt gatcaagtat
751 tcaccatgta tgacaatgag ccgactactg ctaagattcg aatggatctg
801 agagatagaa tgcaggtgtt gaagaagttc tcagttacag tttcaggagg
851 tccatacaat cataaggagc aggcattagt taggaagttt tttaagggtt
901 tgtataatca tgtgacttat aatcacaaag aagaagctaa ctatgagaat
951 cagttagaaa atgctcttat gctgtatagt gctagcagtc atgctagtaa
1001 tcctgtgtat cagaccctgc gttgcagggt ttatttttat gattcacaca
1051 ataattaata aacttttatt ttattaatac agtaatacct ttacatcatc
1101 agtacagtcg attgtatcta cttcatctat ccaagaacat actcttggaa
1151 gatatctaat aacaaaaact aaattaacta gactaagaaa ccctatattt
1201 gctaatccat tacagattcg ccatttaagg cgttccaaaa taccagtcca
1251 actgtgaata gcaccagtta gtcgggtcgt caagatcctg aattggagga
1301 agatcttgtg gaatcccagt tgcctccttt ccctgtagtt gaccctcatt
1351 tggaatttga ggatggttct cccctgtgtg ctctcgtgga catacattat
1401 tcggagattg aatggggcag tccgacccgc agacatgggg ttgttgtcga
1451 attcgagtgc tctcatagtc tgagcatgac ttagtgattc ccctgtgcgt
1501 gaatccatgc tggtacttgc aggttgtggt tatgaaggct gaacaaccac
1551 aacccttcca cactatcctc gtccttgttt caggaacttt cctcttgacc
1601 ttcttcgcct ctgcgtgcag tggctcctga atgggacact tcctcttgag
1651 tccagaaggg agattggaca tcgcagaata tagcgtttgc tgttgcccaa
1701 ttcttgagtg ctccttgttc tggtttgtct agccagagtt taaatgagga
1751 accctctcct ggattgcaga ggaagatagt gggaattccg cctttaattt
1801 gaactggctt tccgtattta cagttggatt gccagtcctt cttggccccc
1851 atgaattctt taaagtgctt taggtattgg gggttgacgt catcaattac
1901 gttataccaa gcactgttgc tgtaaacttt tgggctaaga tctaaatgcc
1951 cacacaaata attgtgaggg cccaaagacc tggcccatac tgttttgcct
2001 attctgcttg ggccttcaat aacaatggat atgggtctat ccggccgcgc
2051 agcggaatcc atgacatttt cagcggccca gtcgctgata atgtcaggaa
2101 cggcattgaa agaagatgaa gaaaaagggg aagaatatac agaaggtgga
2151 ggagaaaaaa tcctatctaa attagaaact aaattatgat attgaaataa
2201 atatttttca gggagtttct ccctaattat ttgtaacgca gcttctttag
2251 aacctgcgtt tagagcctct gcggctgcgt cgttagcagt ctgctgacct
2301 cctctagcag atctgccgtc gacctggaat tcaccccagg tgagggtatc
2351 cccgtcctta tcaacgtagg acttgacatc ggacgaggat ttagctccct
2401 ggatgttggg gtgaaagtga ttcgaccttg tgggtgagac aaggtcgaag
2451 aatctgctat ttgtgcagac gaatttacct tcgaactgca ccagcacatg
2501 gaggtgaggt tccccatcct cgtgcagttc tttggctatg tgtatgtatt
2551 ttttgttggt tggggtttgg atgtgtagta gttgggctag gcagtcctct
2601 ttagagagag aacagcgtgg ataagtaatg aaatagtttt ttgaagaaat
2651 tctaaaacgt ttgggcggag ccatttggtg acactcagac tttcaaaatg
2701 aattggtgac tggtgacaat ttatactatg tcaccaaatg gcattttggt
2751 aatttagaag atccttttag ctttaattca aattccgaca actctgggtc
2801 cacataaagg cgggcaccgt attaatatt