Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus isolate YJ-M segment S10, complete sequence.
ACC No: HQ394212
Dated: 2011-04-17 | Length: 1798 | CRC: 2025532755
ID HQ394212; SV 1; linear; genomic RNA; STD; VRL; 1798 BP. XX AC HQ394212; XX DT 17-APR-2011 (Rel. 108, Created) DT 17-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate YJ-M segment S10, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC unclassified Fijivirus. XX RN [1] RP 1-1798 RA Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.; RT "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan, RT China)"; RL Unpublished. XX RN [2] RP 1-1798 RA Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.; RT ; RL Submitted (12-OCT-2010) to the EMBL/GenBank/DDBJ databases. RL Institute of Biotechnology and Germplasma Resources, Yunnan Academy of RL Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China XX FH Key Location/Qualifiers FH FT source 1. .1798 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S10" FT /host="maize" FT /isolate="YJ-M" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="17-Sep-2009" FT /db_xref="taxon:519497" FT CDS 22. .1695 FT /codon_start=1 FT /product="p10" FT /note="coat protein" FT /protein_id="AEB40351.1" FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE FT SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ FT PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL FT EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF FT NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELGALDADK FT SLLEQTWSGVSSFIETCKVKTKVKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFIE FT WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI FT TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID FT DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA FT NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR" XX SQ Sequence 1798 BP; 613 A; 318 C; 316 G; 551 T; 0 other; hq394212 Length: 1798 17-APR-2011 Type: N Check: 1300 .. 1 aagttttttt cctcatccat aatggctgac ataagacttg acatagcgcc 51 cgatcttatc cataatggtg tgcctcaaag actttcagat acgataattc 101 taaacaaccg accaacaatc acacttctgt ctcacttcaa ctctcttttt 151 cacgaatcaa acattgtcaa atcaccccac atcgcgtcat ctcaaactac 201 tgttaattta tacattcgta agcatttatt gactcgactt catgatagat 251 tacaaactgt cgaaaccagt actctaccaa acattactca acttaaagaa 301 catattcaaa gttatttccg taatgaacat caacctattt tccaaaccct 351 gactaacaat aatcttagtg atgaattttt aggtgtaact acttttggtt 401 taagtctatt cgcaacttca aagttggatg cagaacaaat agaacgagta 451 caaattgaga ccctaactga aggaaacgtt acacttaaac cattctccgc 501 tgacggttta gaagtaattt tagatgatag ttacatcgga ataattggaa 551 aaatttctgg tttagaagta cataaattgc tcgataaatg ttgtcgtgaa 601 gttcctgctc aaatgggaat attaactgac gaagttaaac ttttaatacg 651 ttccggaaaa ttaagaattg acggtggata cgatttcaat tgtcctgcta 701 gtacaacaga cgtgacgcac tatggcggtt atgaccaata ttcgagacaa 751 atgtttgaaa aattgaattt gttctttaat atcagtttga gcattattcc 801 tgtttctgca cttaaaacta ttcatgtatt tgagaaagaa ctaggtgctt 851 tagatgctga caaatcactt ttagaacaaa catggagcgg agtctcctca 901 tttattgaaa cctgtaaagt aaaaactaaa gttaaagatg aagatcaaga 951 tgagtacgaa ctagctggac tgtctgcact tagaaaagga gtcgatggta 1001 attctgtatc tagcccttac aatgataaga aattcatcga atggtattct 1051 aagacgtttg ctaaaataga gaaaggttca tcgttgcgta agactgaaat 1101 tgaagacaaa aatacgtccg gtacttcaaa cataacaaag caagttaaaa 1151 ttcattttcc tgttcagtat ttcgatgaag tcaaatctaa cggtcatgaa 1201 aaaagtgtta ctgtaatcac taataaaggt gaaatgtcat tggaatctta 1251 ccgaaagata ggtgaaatat taagtgcgat ctggaaacgt ggtaaggcat 1301 tagctgctcc ctgcatcgat tacatcaaac ttggtgtcga aaaagcttat 1351 cacttagctc ctgtaatcat gaagaaatat aatttaacta ttgatgatat 1401 aattcatttt attgaaattg gtccttcata cttagcgaaa ttggataaaa 1451 ttgatgattg gtccttaatt gcaaaattga ttattaccag tgttttgcca 1501 aacatcattc aagcggtgta taaaacagat cctagcaata atgttatgaa 1551 ttcagtcatt attagcagag ctaacaattt attgaaggcg gatcgcgatc 1601 gtctaattaa gaaagctacc actgcaaatt catctaccag taattcaaat 1651 tcagaacatg gtcaaaagat tgtgttaaat aaagtcacca gatgataatt 1701 gaggtttcat cattagcgcg actagttcag tgctgtgtgg tcttcagttc 1751 attatcgacg ccgagtgacg acggctaggg ggaaattcag ctattgtc