Sequence of DPV Southern rice black-streaked dwarf virus

Southern rice black-streaked dwarf virus isolate YJ-M segment S10, complete sequence.

ACC No: HQ394212

Dated: 2011-04-17 | Length: 1798 | CRC: 2025532755

                
ID   HQ394212; SV 1; linear; genomic RNA; STD; VRL; 1798 BP.
XX
AC   HQ394212;
XX
DT   17-APR-2011 (Rel. 108, Created)
DT   17-APR-2011 (Rel. 108, Last updated, Version 1)
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DE   Southern rice black-streaked dwarf virus isolate YJ-M segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   unclassified Fijivirus.
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RN   [1]
RP   1-1798
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   "Molecular identification of maize rough dwarf disease in Lijiang (Yunnan,
RT   China)";
RL   Unpublished.
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RN   [2]
RP   1-1798
RA   Yin Y.-Y., Wang D., Dong J.-H., Zhang Z.-K.;
RT   ;
RL   Submitted (12-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Biotechnology and Germplasma Resources, Yunnan Academy of
RL   Agricultural Sciences, Xueyun Road No. 9, Kunming, Yunnan 650223, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1798
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="YJ-M"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="17-Sep-2009"
FT                   /db_xref="taxon:519497"
FT   CDS             22. .1695
FT                   /codon_start=1
FT                   /product="p10"
FT                   /note="coat protein"
FT                   /protein_id="AEB40351.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELGALDADK
FT                   SLLEQTWSGVSSFIETCKVKTKVKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1798 BP; 613 A; 318 C; 316 G; 551 T; 0 other;

hq394212 Length: 1798  17-APR-2011  Type: N  Check: 1300  ..

       1  aagttttttt cctcatccat aatggctgac ataagacttg acatagcgcc
      51  cgatcttatc cataatggtg tgcctcaaag actttcagat acgataattc
     101  taaacaaccg accaacaatc acacttctgt ctcacttcaa ctctcttttt
     151  cacgaatcaa acattgtcaa atcaccccac atcgcgtcat ctcaaactac
     201  tgttaattta tacattcgta agcatttatt gactcgactt catgatagat
     251  tacaaactgt cgaaaccagt actctaccaa acattactca acttaaagaa
     301  catattcaaa gttatttccg taatgaacat caacctattt tccaaaccct
     351  gactaacaat aatcttagtg atgaattttt aggtgtaact acttttggtt
     401  taagtctatt cgcaacttca aagttggatg cagaacaaat agaacgagta
     451  caaattgaga ccctaactga aggaaacgtt acacttaaac cattctccgc
     501  tgacggttta gaagtaattt tagatgatag ttacatcgga ataattggaa
     551  aaatttctgg tttagaagta cataaattgc tcgataaatg ttgtcgtgaa
     601  gttcctgctc aaatgggaat attaactgac gaagttaaac ttttaatacg
     651  ttccggaaaa ttaagaattg acggtggata cgatttcaat tgtcctgcta
     701  gtacaacaga cgtgacgcac tatggcggtt atgaccaata ttcgagacaa
     751  atgtttgaaa aattgaattt gttctttaat atcagtttga gcattattcc
     801  tgtttctgca cttaaaacta ttcatgtatt tgagaaagaa ctaggtgctt
     851  tagatgctga caaatcactt ttagaacaaa catggagcgg agtctcctca
     901  tttattgaaa cctgtaaagt aaaaactaaa gttaaagatg aagatcaaga
     951  tgagtacgaa ctagctggac tgtctgcact tagaaaagga gtcgatggta
    1001  attctgtatc tagcccttac aatgataaga aattcatcga atggtattct
    1051  aagacgtttg ctaaaataga gaaaggttca tcgttgcgta agactgaaat
    1101  tgaagacaaa aatacgtccg gtacttcaaa cataacaaag caagttaaaa
    1151  ttcattttcc tgttcagtat ttcgatgaag tcaaatctaa cggtcatgaa
    1201  aaaagtgtta ctgtaatcac taataaaggt gaaatgtcat tggaatctta
    1251  ccgaaagata ggtgaaatat taagtgcgat ctggaaacgt ggtaaggcat
    1301  tagctgctcc ctgcatcgat tacatcaaac ttggtgtcga aaaagcttat
    1351  cacttagctc ctgtaatcat gaagaaatat aatttaacta ttgatgatat
    1401  aattcatttt attgaaattg gtccttcata cttagcgaaa ttggataaaa
    1451  ttgatgattg gtccttaatt gcaaaattga ttattaccag tgttttgcca
    1501  aacatcattc aagcggtgta taaaacagat cctagcaata atgttatgaa
    1551  ttcagtcatt attagcagag ctaacaattt attgaaggcg gatcgcgatc
    1601  gtctaattaa gaaagctacc actgcaaatt catctaccag taattcaaat
    1651  tcagaacatg gtcaaaagat tgtgttaaat aaagtcacca gatgataatt
    1701  gaggtttcat cattagcgcg actagttcag tgctgtgtgg tcttcagttc
    1751  attatcgacg ccgagtgacg acggctaggg ggaaattcag ctattgtc