Sequence of DPV Grapevine leafroll-associated virus 3

Grapevine leafroll-associated virus 3 isolate Touriga Nacional-2 coat protein gene, complete cds.

ACC No: HQ401019

Dated: 2011-03-04 | Length: 942 | CRC: 1666300970

                
ID   HQ401019; SV 1; linear; genomic RNA; STD; VRL; 942 BP.
XX
AC   HQ401019;
XX
DT   23-DEC-2010 (Rel. 107, Created)
DT   04-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Grapevine leafroll-associated virus 3 isolate Touriga Nacional-2 coat
DE   protein gene, complete cds.
XX
KW   .
XX
OS   Grapevine leafroll-associated virus 3
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Ampelovirus.
XX
RN   [1]
RP   1-942
RX   PUBMED; 21153745.
RA   Gouveia P., Santos M.T., Eiras-Dias J.E., Nolasco G.;
RT   "Five phylogenetic groups identified in the coat protein gene of grapevine
RT   leafroll-associated virus 3 obtained from Portuguese grapevine varieties";
RL   Arch. Virol. 156(3):413-420(2011).
XX
RN   [2]
RP   1-942
RA   Gouveia P., Santos M.T., Eiras-Dias J.E., Nolasco G.;
RT   ;
RL   Submitted (11-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   Center for Biodiversity, Functional and Integrative Genomics, Universidade
RL   Do Algarve, Campus de Gambelas, Faro 8005-139, Portugal
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .942
FT                   /organism="Grapevine leafroll-associated virus 3"
FT                   /host="Vitis vinifera; cultivar Touriga Nacional"
FT                   /isolate="Touriga Nacional-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Portugal"
FT                   /collection_date="Jan-2008"
FT                   /db_xref="taxon:55951"
FT   CDS             1. .942
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:E2CV40"
FT                   /protein_id="ADT89787.1"
FT                   /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ
FT                   AELTGIAVVPEKYVFATAALATAAQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVF
FT                   EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDD
FT                   TTTKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE
FT                   NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAI
FT                   LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK"
XX
SQ   Sequence 942 BP; 298 A; 189 C; 246 G; 209 T; 0 other;

hq401019 Length: 942  04-MAR-2011  Type: N  Check: 5328  ..

       1  atggcatttg aactgaaatt agggcagata tatgaagttg tccccgaaaa
      51  caatctgaga gttagagtag gggatgcggc acaaggaaag tttagtaagg
     101  cgagtttctt aaaatacgtt aaggacggga cgcaggcgga gttaacagga
     151  atcgctgtag tgccggaaaa gtacgtattc gccacagcag ctttagctac
     201  agcggcacag gagccaccta agcagccgac aacgcaagtg gtggaaccac
     251  cagaagccga tataggggtg gtgccggaat ctgagactct tacaccaaat
     301  aagctggttt ttgagaaaga tccagacaag ttcttaaaga ctatgggtaa
     351  ggggatagct ttggacttaa cgggggttac ccataaaccg aaagttatta
     401  acgagccggg aaaagtatca gtagaggtag caatgaagat taataccgca
     451  ttggtagagc tgtgtaagaa ggttatgggc tccgatgaca caacaaccaa
     501  gacaaaattc ttcttgtacg tgatgcagat cgcttgcacg ttctttacat
     551  cgtcttcgac ggagttcaaa gagttcgact acatagaaac ggacgatgga
     601  aagaagatat atgcggtgtg ggtatacgat tgcattaaac aagctgccgc
     651  ttcaacgggt tacgaaaacc cggtaaggca gtatctagca tacttcacgc
     701  caaccttgat cacggcgacc ctgaatggta aactggtgat gaatgaaaag
     751  gtcatggcac agcatggagt accaccgaaa ttctttccgt acgcgattga
     801  ctgcgttcgt ccgacgtacg atctgttcaa taacgacgca atactagcat
     851  ggaatttagc taggcagcag gcgtttagaa ataagacggt gacggccgat
     901  aacaccttac acaacgtctt ccaactattg cagaagaaat ag