Sequence of DPV Scylla serrata reovirus SZ-2007

Scylla serrata reovirus SZ-2007 segment 5, complete sequence.

ACC No: HQ414131

Dated: 2012-01-05 | Length: 2388 | CRC: -1155834288

                
ID   HQ414131; SV 1; linear; genomic RNA; STD; VRL; 2388 BP.
XX
AC   HQ414131;
XX
DT   06-DEC-2011 (Rel. 111, Created)
DT   05-JAN-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Scylla serrata reovirus SZ-2007 segment 5, complete sequence.
XX
KW   .
XX
OS   Scylla serrata reovirus SZ-2007
OC   Viruses; dsRNA viruses; Reoviridae; unclassified Reoviridae.
XX
RN   [1]
RP   1-2388
RX   PUBMED; 22088215.
RA   Deng X.X., Lu L., Ou Y.J., Su H.J., Li G., Guo Z.X., Zhang R., Zheng P.R.,
RA   Chen Y.G., He J.G., Weng S.P.;
RT   "Sequence analysis of 12 genome segments of mud crab reovirus (MCRV)";
RL   Virology 422(2):185-194(2012).
XX
RN   [2]
RP   1-2388
RA   Deng X., Lv L., Ou Y., Li G., Guo Z., Zhang R., Su H., Zheng P., He J.,
RA   Weng S.;
RT   ;
RL   Submitted (18-OCT-2010) to the INSDC.
RL   School of Life Sciences, Sun Yat-sen University, MOE Key Laboratory of
RL   Aquatic Product Safety/State Key Lab for Biocontrol, 135 Xingang Road West,
RL   Guangzhou, Guangdong 510275, China
XX
CC   GenBank Accession Numbers HQ414127-HQ414138 represent the complete
CC   genome of Scylla serrata reovirus SZ-2007.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2388
FT                   /organism="Scylla serrata reovirus SZ-2007"
FT                   /segment="5"
FT                   /host="Scylla serrata (mud crab)"
FT                   /isolate="Southern China"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2004"
FT                   /db_xref="taxon:458682"
FT   gene            56. .1675
FT                   /locus_tag="MCRV_s5p1"
FT   CDS             56. .1675
FT                   /codon_start=1
FT                   /locus_tag="MCRV_s5p1"
FT                   /product="VP5"
FT                   /protein_id="AEQ75470.1"
FT                   /translation="MDRNKTFQIPHHAPHRDIFSATTEEVAEMHEQLKSGSLLRGFLVI
FT                   EQGQGPYYVVVVDESVHQGWIYNARTPQLEVRKIVNGVYIGQNVVPDERGIMHPGTGEP
FT                   YHDLLIKLLDDGLIPYYQYQPLNVSGALDLTDEFSTESVQLDSYGKRTSKFEFFPSSSL
FT                   SKLRNANIPCRRISRVETVRCDWPHVFVLDPYNCTMVRLPVLRSFSGVSYEADVQQEKT
FT                   VYLVYNPLEFIGIWYVGSGRTIALQRVWVKRMLRDAITSDFCDAVESRARVTPSIQQLF
FT                   TDAIHSKSKRQDDHTKWIDMLFKSNLPRFVMLKKFLSLCNMKNIQIESDKARDYILYDN
FT                   QYILTIFHDKNGWIAVYDSNVERVLDTMVSVAPTPRHTPIKFSKPYRYMVHRIVGREHV
FT                   LALRLAELGLVPNGQGNICTDCSSGSGDYMDHVQNRCLYTLRTLGLYVCTSSYTPQWIK
FT                   EELERQKIPVQYRNGAFGPMLTHSKIPLTLSQAISVLMGNSVRGPQGAGALMQISYYGV
FT                   VVPPVSRKNRPRRKMTRFDNRT"
XX
SQ   Sequence 2388 BP; 683 A; 455 C; 481 G; 769 T; 0 other;

hq414131 Length: 2388  05-JAN-2012  Type: N  Check: 5117  ..

       1  ataaatttct ctgcacgtgg atttccgcga tcaacgagta tagcacgaac
      51  ttagtatgga tcgtaacaag acttttcaga ttccacatca tgccccgcat
     101  cgcgacatat tctctgccac aacagaggaa gttgcagaaa tgcatgaaca
     151  actgaagagc ggttcactac tgagagggtt tctcgtgatt gaacaagggc
     201  agggacctta ctatgttgtt gttgtagatg aatcagtaca ccaaggatgg
     251  atttacaatg ccagaacacc tcagcttgaa gttaggaaga ttgtcaatgg
     301  tgtttacatc ggccagaatg ttgtaccaga tgaacgtggc ataatgcacc
     351  caggtacagg agagccgtat cacgacctgt tgattaagtt gctagatgac
     401  ggattgattc catactacca gtatcaacct ttaaatgttt caggagcatt
     451  ggatttgaca gatgagttta gtaccgaatc agtgcaattg gattcatatg
     501  gaaagcgcac tagtaaattt gaatttttcc cttcttcaag tttgtcaaaa
     551  ttgcgcaatg caaacatacc atgcagacga atatcaagag ttgaaactgt
     601  taggtgtgac tggcctcatg tgtttgttct agacccttac aactgcacca
     651  tggttaggtt acctgtattg cgttctttct ccggtgtcag ttacgaggca
     701  gatgttcaac aagagaagac ggtgtacttg gtttacaatc ctttggagtt
     751  tattggcata tggtatgtag gtagtggtag aactattgca ttacagagag
     801  tctgggttaa acgaatgctt cgtgacgcca ttacatctga tttttgtgat
     851  gctgtggaat ctagagcaag agttacacca agtatccagc aactattcac
     901  tgatgcaatc cacagcaagt caaaaagaca ggatgatcat acaaagtgga
     951  tagatatgct ctttaaatct aatttacccc ggtttgtcat gcttaaaaag
    1001  tttctctctc tttgtaatat gaaaaacatt caaatcgaaa gtgataaggc
    1051  cagagactac attctgtatg ataatcagta tattcttaca atatttcatg
    1101  ataaaaatgg atggattgca gtttatgata gtaatgtgga gagagtccta
    1151  gataccatgg tgtcagtggc tcctacacca agacatacac caatcaaatt
    1201  cagcaaacct tatagataca tggtgcatcg cattgtcggt agagagcatg
    1251  ttctagcgtt gcggttggct gagttaggac tcgtacctaa tggtcagggt
    1301  aacatctgta ctgattgctc ttctggaagt ggagattata tggatcatgt
    1351  tcagaacaga tgtctgtaca ctctgagaac cttaggactt tacgtatgta
    1401  ccagctcata cacacctcaa tggattaaag aagaattaga acgtcagaag
    1451  attccagtgc aatatagaaa tggagccttc gggccaatgc tgacacattc
    1501  caaaatacca ttgacactca gccaagcaat aagcgttctt atgggaaaca
    1551  gcgttagagg gccacaaggt gcaggcgcgc tgatgcagat ctcttactat
    1601  ggagtggttg tcccaccagt ctcacgtaag aatcgtccca gacgcaagat
    1651  gacccggttt gacaatagaa cttaagctgt tatatacatc agcacatacc
    1701  cctagcgtta agcagttcat tatattcttg atgtttatgt cactacttat
    1751  atataatgca tactatattt ccttcttaca tttattgtgt ttttatgtta
    1801  gtatatgtaa tagatctttg cttgtattga tggttgtatc gcatcatgca
    1851  tcttttacca ttgctctact tgtataatct aatctattaa taatgtcaca
    1901  tttaaccttg ttacatttat ctgtcttcta ttattatata tgtataacta
    1951  tgtagctgtg tggacttata tggttaccct tattgtatta tgattatgtg
    2001  atgtaatgtt gtattttatg tattttatgt atttcatgtt tcacttcaat
    2051  tggtttaaac tttctttcct tttgtgaaat tagtcgttgt tccaaaatct
    2101  gggcgtccac ttcatgctaa ctttctttgt atctgctttt atcatctccc
    2151  tataaactat tcattatgtt ctttgctgct attgatggta gtaactgact
    2201  agctctctta ctattatcat atacactgca tttccttatc aaacaagttt
    2251  catttatttt cattactgtt tctgaaacta tattttcgca ttggcgtgcg
    2301  ccgtatgatc tgccgattga agcgcgggct gcactggaca tggacccccc
    2351  aggagtagcc ctaatgactg agaaacaaga acaacgat