Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 strain TVV2-UR1, complete genome.
ACC No: HQ607514
Dated: 2011-05-08 | Length: 4674 | CRC: 760150049
ID HQ607514; SV 1; linear; genomic RNA; STD; VRL; 4674 BP. XX AC HQ607514; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 2 strain TVV2-UR1, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4674 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4674 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX FH Key Location/Qualifiers FH FT source 1. .4674 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /strain="TVV2-UR1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jun-1999" FT /db_xref="taxon:674954" FT gene 297. .4606 FT /gene="pol" FT CDS join(297. .2379,2379. .4606) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /protein_id="AED99806.1" FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ FT GPQLRAKAGQRYVERINQCGGDVIYPRLSTARACSSSATDSTTSTLATQLCYLYKSSDL FT HRQLDITIPQSYLTFIEWLLRMNPDNEKNSIRHFPNHDDHEVITCSLRNLTKEQEIELF FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPKTANDVVCGILLLGEVLWMLRCP FT ISIIVGISRAICRNDSFLKDLSDFNKMLGLTKIPIANCLTELNSLQGRGVTSSDAKRDL FT THRIDDVNPHEAKISRENLKQAINNIYREEISKKEVPDTFKQHVFSSPLWVKKGAHHHP FT HFESYDNRLEFVENVNLDRVLQSHPAVYITQASKLEHGKTRFIYNCDTISYIYFDYILN FT YIEGVWSNKHVLLNPDYMNPIIFSSLDYSEYCMLDFTDFNSQHSIENMKLVFSCLMPFL FT PYSMHSVLQWCVTSFDNMYINNIHWKSTLPSGHRATTFINSVLNRAYLLPFLQVSNAFH FT TGDDVLLCGKADYATLINTAPYELNKTKQSFGPSAEFLRLHKHNDQVSGYPARAISSLV FT SGNWLSYDNPLWQPSLLSIMQQLYTISARSGLLPFVPVTMKAEVRRRYDLPTRLTNGLF FT SGEIVPSGCPCYKSNAALLSAVIPDTVLKAKPKHYDLRTLDILKHTSPWINSESKYFDL FT LDRRHMESSKKNVLYSIQYLPSKMLPIIDVDPTEAFPPQKRYHPRSHIAHPLPREAHLK FT ELRFATCRVGPATAIRLGSLWPANRINLIRPVYV" FT gene 297. .2426 FT /gene="cap" FT CDS 297. .2426 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /protein_id="AED99805.1" FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ FT GPSFAPKPGSAMWNE" XX SQ Sequence 4674 BP; 1358 A; 1244 C; 861 G; 1211 T; 0 other; hq607514 Length: 4674 08-MAY-2011 Type: N Check: 1199 .. 1 gctttgaagg agtgacgacc ttcagagtcc aggcttaatt agcttggtca 51 gatactcctg gggtccatca ggaaacggat cgctaacgcg aactgggtat 101 tagagtcaaa agccttgtgc gccatggata cttggtacac ttcgcgggtg 151 taggtgaccc gcaaggtgga cagttttgtg tggattaaaa actgtactcc 201 taactgctag ccttatgcgg ttgctgtgta ttgagagggc ttatatgtag 251 ctttcatgct tcacaacagc atgattgtcc gcatctaatt acgataatgg 301 cttcgacgct aatatcgtct gataattctg ccacgttagg caaagttaat 351 gaagtaataa ataacacaga tacttcacca cccgacactt cacctggtga 401 tcattcaaat ccacgattaa caaagatact agatgaaatg tccaaaaaac 451 catgtgtaaa tattaatgaa ataagaaaaa tgattagaaa tttccagcct 501 caaattattc aacctcgtaa cggcaaccgc ccagccaatc aaccacgtac 551 agtagactct ttcgaatggg ttgttcgtat ccaaagtaca gttaatactc 601 aattacttgg cgcaacaaac acgattcctg aacaaaccct taatcttgat 651 atctcattta cagatgattc tactacaatt actccagcat ccattccagg 701 ctccatttcc atgctcgaca attcacgtca tatccctgcg attcagagca 751 tgatccagaa tttcaaagcc cgttatttag gcaacctcca ggatacagcc 801 caactcaatt ctccgcagta tcctcagctt ctcgcctatt tattcggaca 851 attgatcgca atcaaagatc gcctcgatct cttccgcccg tcaaatccac 901 tctcatttgc tgatgctcta tttggcttta cattagctca acacgctcac 951 cctcgctacg atgaccacag acacgctaaa gcttgcacag gacctattgt 1001 cataccagct gccaccaatg ccgattgtgg tccttgcggt ttcgtccaga 1051 tcaatgctaa ccaaggtctc accttacctc tcggcgcttg ccttttcgtc 1101 aatcctgaaa cagttaacga ccagtccttc caagatttcc tttggcttat 1151 tttcgcgaca caccaccgca tgccaaacca aatgcaaaac gattggccat 1201 tcgctctcaa tatcgtttca acatgtgctg ctccaggtcg tcaggctcct 1251 caagctggtc agttcactga ggccagagtc aagcttgccc tcgatacagg 1301 tcatcgcatc ctactctcaa tgttcaacga tgatgaagaa gcactccgct 1351 attatcaacg caaaggaatc gaaacaatgt tcagaccatg ttgcttctac 1401 actgaaggcg gtttactcag aaaggccaca agatacgttt caatggttcc 1451 actcagcggc ttatactact acaatggcgc ctcttcatac gtcgtctctc 1501 caatccacac tgatgcacac ccaggaatca ctgcagcagt cgaatctttc 1551 gtcgatatca tggtcctaca ggcggtcttc tctttctcag gccctaaagt 1601 tgtcgccgct aaagttgacg caaatcaaat cgacgcctcc tcagtcttcg 1651 gccctgctgt tgcagaggga gatggttttg tctacgatcc ccgccgtcca 1701 gctcctccgc tttctgcgtt ctatactgaa ttcattcaca gaccagccga 1751 acaacgcata ttccagatgg cgatgagcca gatttacgga tcccacgctc 1801 ccctcatcat cgccaacgtc atcaattcca tccacaattg caagacaaaa 1851 atcgttaaca gcaaattacg caccgccttt gttcgtcgcc cacccggagc 1901 tcctcctctc aaagcagaca cagcaatcat caaccgcttc catgatccag 1951 aactcgcata tgctctcggc attctcgcag atggcattgc ccctctcgat 2001 ggaacacacg aatacaatat cctcgacgaa ctcgattact tgttcaacgg 2051 tggcgacatt cgcaattgtt tcggcctcaa cgcactcaac actcgcggat 2101 taggccagat cgtccacgtt cgtccaaaac gcgagccggg aaagagacct 2151 cgccgcggtt actacaccac tctcgacgga caggtccact ccgtcacaca 2201 agatgctcca ctcgatgaga tttaccactg gcgtgaccat ggaaatctca 2251 cacgtccata ttcgtgccac atcctcgaca gcgaaggatt acaattcgct 2301 gacgtctcca acggacggac acgaggtaaa atcctcgttg tcgtcaacac 2351 accgctcaag acaagcgctg cctatcaggg ccccagcttc gcgccaaagc 2401 cgggcagcgc tatgtggaac gaataaacca atgcgggggc gacgtcatct 2451 atccgcgctt gagcactgct cgcgcctgca gctcgtctgc cactgatagt 2501 acgacgtcga ccctcgcaac ccaactgtgc tacctataca agtcttctga 2551 cttacaccga cagttggaca tcacgatacc acaatcctac ttaacattta 2601 ttgaatggct actcagaatg aatcccgaca atgagaaaaa ttcaattcgt 2651 catttcccaa atcacgatga ccacgaagtt attacatgca gtttacgaaa 2701 tctcacaaaa gaacaagaaa ttgaactatt tccaataaag gacataatcc 2751 aagctaatcg tcgtgtaaat gcttacgcgc gaaatcttct tgatgcctca 2801 ccactccctg attttgctct acaacagatg cttttaccaa aaacagctaa 2851 tgatgtagtt tgcggaatcc tgttacttgg tgaagtatta tggatgcttc 2901 gctgcccaat ttctattatt gtaggcattt ctcgtgcaat atgtcgcaac 2951 gacagtttct taaaagattt atccgatttt aacaagatgt taggcttaac 3001 taagatccca atagctaact gcttgactga attgaacagt ttacagggtc 3051 gaggagtcac ttcaagcgat gccaaaagag atttgaccca ccgaatagac 3101 gatgtcaatc ctcatgaggc gaaaataagt agagaaaacc tcaaacaagc 3151 aatcaataac atatacagag aagaaatcag caaaaaagaa gttcccgata 3201 cattcaagca acacgtattc tcatctccat tatgggttaa gaaaggcgca 3251 caccaccatc ctcacttcga atcttacgac aatagattgg agtttgtaga 3301 aaatgtcaac ttagacaggg ttttacaatc acaccctgct gtttacatta 3351 cacaggcttc aaagctcgaa cacggtaaga cacgattcat ctacaattgt 3401 gatacaatta gttatatata tttcgactat atcttgaact acatcgaggg 3451 tgtctggtcc aataaacatg tgcttctaaa ccccgattac atgaacccga 3501 tcatcttcag cagtctcgat tatagtgagt actgcatgtt agatttcact 3551 gatttcaatt ctcagcattc catcgaaaac atgaagctag tcttttcctg 3601 tcttatgcct ttcttgcctt actcaatgca ttccgtgtta cagtggtgcg 3651 ttacatcatt tgacaatatg tacattaaca atatccactg gaaatcaacg 3701 ctaccatcag gccacagagc aacaacattc atcaactcag tactcaatag 3751 agcgtatcta ctaccattcc tacaagtatc aaacgcattt cataccggtg 3801 atgatgtact gctatgcggg aaggcagact atgccacttt aattaataca 3851 gcaccctatg aacttaataa gactaagcaa tcattcggac cctcagccga 3901 atttttacgc cttcacaaac acaacgacca ggtctcaggc tatcctgcgc 3951 gtgctattag cagtctcgta agtggaaact ggttgtcata cgacaatcca 4001 ttatggcaac cttcactact atcaatcatg caacaattgt acaccatatc 4051 agcgagatca ggtctattac cgtttgttcc cgttacaatg aaggcagaag 4101 ttcggcggcg atacgaccta cctacaagac tcacaaatgg attgttctct 4151 ggtgaaattg tcccaagcgg ttgcccatgt tataagtcaa atgctgcctt 4201 gctaagcgcg gttatcccag atacagtgct caaggcaaaa ccaaagcatt 4251 atgacttacg tactttggac atcctaaaac acacttcacc ttggatcaat 4301 tctgaatcca aatattttga tctcctagat cgccgacata tggaatcgag 4351 taagaaaaac gttttataca gtatccaata tttaccatcc aaaatgttac 4401 caattattga tgtcgacccc actgaggctt ttcctccaca aaaacggtat 4451 catccacgtt cccacatcgc acacccactc ccacgtgaag cacatcttaa 4501 ggaattaaga tttgcaacgt gcagagtggg cccggctaca gcgataagat 4551 taggatcgct ttggcctgcg aatagaatca acctaatcag gccagtgtac 4601 gtataagtac aactgccaaa aaaccttaca aaactactcg gctagagtag 4651 gagagtaata tcaactctta tgtc