Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 strain TVV2-UR1, complete genome.
ACC No: HQ607514
Dated: 2011-05-08 | Length: 4674 | CRC: 760150049
ID HQ607514; SV 1; linear; genomic RNA; STD; VRL; 4674 BP.
XX
AC HQ607514;
XX
DT 08-MAY-2011 (Rel. 108, Created)
DT 08-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Trichomonas vaginalis virus 2 strain TVV2-UR1, complete genome.
XX
KW .
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OS Trichomonas vaginalis virus 2
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4674
RX DOI; 10.1128/JVI.00220-11.
RX PUBMED; 21345965.
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W.,
RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H.,
RA Singh B.N., Fichorova R.N., Nibert M.L.;
RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by
RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)";
RL J. Virol. 85(9):4258-4270(2011).
XX
RN [2]
RP 1-4674
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A.,
RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.;
RT ;
RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Molecular Genetics, Harvard Medical School,
RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4674
FT /organism="Trichomonas vaginalis virus 2"
FT /host="Trichomonas vaginalis"
FT /strain="TVV2-UR1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Jun-1999"
FT /db_xref="taxon:674954"
FT gene 297. .4606
FT /gene="pol"
FT CDS join(297. .2379,2379. .4606)
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /note="translated via ribosomal frameshift"
FT /protein_id="AED99806.1"
FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL
FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL
FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN
FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD
FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF
FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL
FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV
FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG
FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT
FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL
FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ
FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ
FT GPQLRAKAGQRYVERINQCGGDVIYPRLSTARACSSSATDSTTSTLATQLCYLYKSSDL
FT HRQLDITIPQSYLTFIEWLLRMNPDNEKNSIRHFPNHDDHEVITCSLRNLTKEQEIELF
FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPKTANDVVCGILLLGEVLWMLRCP
FT ISIIVGISRAICRNDSFLKDLSDFNKMLGLTKIPIANCLTELNSLQGRGVTSSDAKRDL
FT THRIDDVNPHEAKISRENLKQAINNIYREEISKKEVPDTFKQHVFSSPLWVKKGAHHHP
FT HFESYDNRLEFVENVNLDRVLQSHPAVYITQASKLEHGKTRFIYNCDTISYIYFDYILN
FT YIEGVWSNKHVLLNPDYMNPIIFSSLDYSEYCMLDFTDFNSQHSIENMKLVFSCLMPFL
FT PYSMHSVLQWCVTSFDNMYINNIHWKSTLPSGHRATTFINSVLNRAYLLPFLQVSNAFH
FT TGDDVLLCGKADYATLINTAPYELNKTKQSFGPSAEFLRLHKHNDQVSGYPARAISSLV
FT SGNWLSYDNPLWQPSLLSIMQQLYTISARSGLLPFVPVTMKAEVRRRYDLPTRLTNGLF
FT SGEIVPSGCPCYKSNAALLSAVIPDTVLKAKPKHYDLRTLDILKHTSPWINSESKYFDL
FT LDRRHMESSKKNVLYSIQYLPSKMLPIIDVDPTEAFPPQKRYHPRSHIAHPLPREAHLK
FT ELRFATCRVGPATAIRLGSLWPANRINLIRPVYV"
FT gene 297. .2426
FT /gene="cap"
FT CDS 297. .2426
FT /codon_start=1
FT /gene="cap"
FT /product="capsid protein"
FT /protein_id="AED99805.1"
FT /translation="MASTLISSDNSATLGKVNEVINNTDTSPPDTSPGDHSNPRLTKIL
FT DEMSKKPCVNINEIRKMIRNFQPQIIQPRNGNRPANQPRTVDSFEWVVRIQSTVNTQLL
FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN
FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQHAHPRYD
FT DHRHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF
FT LWLIFATHHRMPNQMQNDWPFALNIVSTCAAPGRQAPQAGQFTEARVKLALDTGHRILL
FT SMFNDDEEALRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYV
FT VSPIHTDAHPGITAAVESFVDIMVLQAVFSFSGPKVVAAKVDANQIDASSVFGPAVAEG
FT DGFVYDPRRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT
FT KIVNSKLRTAFVRRPPGAPPLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL
FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKREPGKRPRRGYYTTLDGQVHSVTQ
FT DAPLDEIYHWRDHGNLTRPYSCHILDSEGLQFADVSNGRTRGKILVVVNTPLKTSAAYQ
FT GPSFAPKPGSAMWNE"
XX
SQ Sequence 4674 BP; 1358 A; 1244 C; 861 G; 1211 T; 0 other;
hq607514 Length: 4674 08-MAY-2011 Type: N Check: 1199 ..
1 gctttgaagg agtgacgacc ttcagagtcc aggcttaatt agcttggtca
51 gatactcctg gggtccatca ggaaacggat cgctaacgcg aactgggtat
101 tagagtcaaa agccttgtgc gccatggata cttggtacac ttcgcgggtg
151 taggtgaccc gcaaggtgga cagttttgtg tggattaaaa actgtactcc
201 taactgctag ccttatgcgg ttgctgtgta ttgagagggc ttatatgtag
251 ctttcatgct tcacaacagc atgattgtcc gcatctaatt acgataatgg
301 cttcgacgct aatatcgtct gataattctg ccacgttagg caaagttaat
351 gaagtaataa ataacacaga tacttcacca cccgacactt cacctggtga
401 tcattcaaat ccacgattaa caaagatact agatgaaatg tccaaaaaac
451 catgtgtaaa tattaatgaa ataagaaaaa tgattagaaa tttccagcct
501 caaattattc aacctcgtaa cggcaaccgc ccagccaatc aaccacgtac
551 agtagactct ttcgaatggg ttgttcgtat ccaaagtaca gttaatactc
601 aattacttgg cgcaacaaac acgattcctg aacaaaccct taatcttgat
651 atctcattta cagatgattc tactacaatt actccagcat ccattccagg
701 ctccatttcc atgctcgaca attcacgtca tatccctgcg attcagagca
751 tgatccagaa tttcaaagcc cgttatttag gcaacctcca ggatacagcc
801 caactcaatt ctccgcagta tcctcagctt ctcgcctatt tattcggaca
851 attgatcgca atcaaagatc gcctcgatct cttccgcccg tcaaatccac
901 tctcatttgc tgatgctcta tttggcttta cattagctca acacgctcac
951 cctcgctacg atgaccacag acacgctaaa gcttgcacag gacctattgt
1001 cataccagct gccaccaatg ccgattgtgg tccttgcggt ttcgtccaga
1051 tcaatgctaa ccaaggtctc accttacctc tcggcgcttg ccttttcgtc
1101 aatcctgaaa cagttaacga ccagtccttc caagatttcc tttggcttat
1151 tttcgcgaca caccaccgca tgccaaacca aatgcaaaac gattggccat
1201 tcgctctcaa tatcgtttca acatgtgctg ctccaggtcg tcaggctcct
1251 caagctggtc agttcactga ggccagagtc aagcttgccc tcgatacagg
1301 tcatcgcatc ctactctcaa tgttcaacga tgatgaagaa gcactccgct
1351 attatcaacg caaaggaatc gaaacaatgt tcagaccatg ttgcttctac
1401 actgaaggcg gtttactcag aaaggccaca agatacgttt caatggttcc
1451 actcagcggc ttatactact acaatggcgc ctcttcatac gtcgtctctc
1501 caatccacac tgatgcacac ccaggaatca ctgcagcagt cgaatctttc
1551 gtcgatatca tggtcctaca ggcggtcttc tctttctcag gccctaaagt
1601 tgtcgccgct aaagttgacg caaatcaaat cgacgcctcc tcagtcttcg
1651 gccctgctgt tgcagaggga gatggttttg tctacgatcc ccgccgtcca
1701 gctcctccgc tttctgcgtt ctatactgaa ttcattcaca gaccagccga
1751 acaacgcata ttccagatgg cgatgagcca gatttacgga tcccacgctc
1801 ccctcatcat cgccaacgtc atcaattcca tccacaattg caagacaaaa
1851 atcgttaaca gcaaattacg caccgccttt gttcgtcgcc cacccggagc
1901 tcctcctctc aaagcagaca cagcaatcat caaccgcttc catgatccag
1951 aactcgcata tgctctcggc attctcgcag atggcattgc ccctctcgat
2001 ggaacacacg aatacaatat cctcgacgaa ctcgattact tgttcaacgg
2051 tggcgacatt cgcaattgtt tcggcctcaa cgcactcaac actcgcggat
2101 taggccagat cgtccacgtt cgtccaaaac gcgagccggg aaagagacct
2151 cgccgcggtt actacaccac tctcgacgga caggtccact ccgtcacaca
2201 agatgctcca ctcgatgaga tttaccactg gcgtgaccat ggaaatctca
2251 cacgtccata ttcgtgccac atcctcgaca gcgaaggatt acaattcgct
2301 gacgtctcca acggacggac acgaggtaaa atcctcgttg tcgtcaacac
2351 accgctcaag acaagcgctg cctatcaggg ccccagcttc gcgccaaagc
2401 cgggcagcgc tatgtggaac gaataaacca atgcgggggc gacgtcatct
2451 atccgcgctt gagcactgct cgcgcctgca gctcgtctgc cactgatagt
2501 acgacgtcga ccctcgcaac ccaactgtgc tacctataca agtcttctga
2551 cttacaccga cagttggaca tcacgatacc acaatcctac ttaacattta
2601 ttgaatggct actcagaatg aatcccgaca atgagaaaaa ttcaattcgt
2651 catttcccaa atcacgatga ccacgaagtt attacatgca gtttacgaaa
2701 tctcacaaaa gaacaagaaa ttgaactatt tccaataaag gacataatcc
2751 aagctaatcg tcgtgtaaat gcttacgcgc gaaatcttct tgatgcctca
2801 ccactccctg attttgctct acaacagatg cttttaccaa aaacagctaa
2851 tgatgtagtt tgcggaatcc tgttacttgg tgaagtatta tggatgcttc
2901 gctgcccaat ttctattatt gtaggcattt ctcgtgcaat atgtcgcaac
2951 gacagtttct taaaagattt atccgatttt aacaagatgt taggcttaac
3001 taagatccca atagctaact gcttgactga attgaacagt ttacagggtc
3051 gaggagtcac ttcaagcgat gccaaaagag atttgaccca ccgaatagac
3101 gatgtcaatc ctcatgaggc gaaaataagt agagaaaacc tcaaacaagc
3151 aatcaataac atatacagag aagaaatcag caaaaaagaa gttcccgata
3201 cattcaagca acacgtattc tcatctccat tatgggttaa gaaaggcgca
3251 caccaccatc ctcacttcga atcttacgac aatagattgg agtttgtaga
3301 aaatgtcaac ttagacaggg ttttacaatc acaccctgct gtttacatta
3351 cacaggcttc aaagctcgaa cacggtaaga cacgattcat ctacaattgt
3401 gatacaatta gttatatata tttcgactat atcttgaact acatcgaggg
3451 tgtctggtcc aataaacatg tgcttctaaa ccccgattac atgaacccga
3501 tcatcttcag cagtctcgat tatagtgagt actgcatgtt agatttcact
3551 gatttcaatt ctcagcattc catcgaaaac atgaagctag tcttttcctg
3601 tcttatgcct ttcttgcctt actcaatgca ttccgtgtta cagtggtgcg
3651 ttacatcatt tgacaatatg tacattaaca atatccactg gaaatcaacg
3701 ctaccatcag gccacagagc aacaacattc atcaactcag tactcaatag
3751 agcgtatcta ctaccattcc tacaagtatc aaacgcattt cataccggtg
3801 atgatgtact gctatgcggg aaggcagact atgccacttt aattaataca
3851 gcaccctatg aacttaataa gactaagcaa tcattcggac cctcagccga
3901 atttttacgc cttcacaaac acaacgacca ggtctcaggc tatcctgcgc
3951 gtgctattag cagtctcgta agtggaaact ggttgtcata cgacaatcca
4001 ttatggcaac cttcactact atcaatcatg caacaattgt acaccatatc
4051 agcgagatca ggtctattac cgtttgttcc cgttacaatg aaggcagaag
4101 ttcggcggcg atacgaccta cctacaagac tcacaaatgg attgttctct
4151 ggtgaaattg tcccaagcgg ttgcccatgt tataagtcaa atgctgcctt
4201 gctaagcgcg gttatcccag atacagtgct caaggcaaaa ccaaagcatt
4251 atgacttacg tactttggac atcctaaaac acacttcacc ttggatcaat
4301 tctgaatcca aatattttga tctcctagat cgccgacata tggaatcgag
4351 taagaaaaac gttttataca gtatccaata tttaccatcc aaaatgttac
4401 caattattga tgtcgacccc actgaggctt ttcctccaca aaaacggtat
4451 catccacgtt cccacatcgc acacccactc ccacgtgaag cacatcttaa
4501 ggaattaaga tttgcaacgt gcagagtggg cccggctaca gcgataagat
4551 taggatcgct ttggcctgcg aatagaatca acctaatcag gccagtgtac
4601 gtataagtac aactgccaaa aaaccttaca aaactactcg gctagagtag
4651 gagagtaata tcaactctta tgtc