Sequence of DPV Trichomonas vaginalis virus 3
Trichomonas vaginalis virus 3 strain TVV3-UR1, complete genome.
ACC No: HQ607515
Dated: 2011-05-08 | Length: 4845 | CRC: 333657510
ID HQ607515; SV 1; linear; genomic RNA; STD; VRL; 4845 BP.
XX
AC HQ607515;
XX
DT 08-MAY-2011 (Rel. 108, Created)
DT 08-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Trichomonas vaginalis virus 3 strain TVV3-UR1, complete genome.
XX
KW .
XX
OS Trichomonas vaginalis virus 3
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4845
RX DOI; 10.1128/JVI.00220-11.
RX PUBMED; 21345965.
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W.,
RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H.,
RA Singh B.N., Fichorova R.N., Nibert M.L.;
RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by
RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)";
RL J. Virol. 85(9):4258-4270(2011).
XX
RN [2]
RP 1-4845
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A.,
RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.;
RT ;
RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Molecular Genetics, Harvard Medical School,
RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4845
FT /organism="Trichomonas vaginalis virus 3"
FT /host="Trichomonas vaginalis"
FT /strain="TVV3-UR1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Jun-1999"
FT /db_xref="taxon:170965"
FT gene 363. .4693
FT /gene="pol"
FT CDS join(363. .2448,2448. .4693)
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /note="translated via ribosomal frameshift"
FT /protein_id="AED99800.1"
FT /translation="MSAPEPLNTEVRSPNGVSEAKETQNLAITQSGVSNEKITDTQSDL
FT QTLKKQLQPVSRSTDFETLYNYFYGLQVPASTDRIGNAIQRNIPVNDTNEVVSFPLTAS
FT VSHTFSNTPVPAHIQPLQISVADDCXNYELDESGTLCPALDSSVHVQRATSLASALKVK
FT LTGEVMHSASVRPIQTPQLIAYLYGVLLAVQDRINIHRNQPTNLWRSLCAPGRAAQAKP
FT FFDEFANNKFRAGPLLAPPLPDAGFGPFPAEGLNQNSKLDFKSKGYIFYKQRTYNPDDM
FT NRAFWFLWAIYNRMPGEFQQYYQLNITFCTSELPVQNPIPNADGISNEQCEKALLLLEK
FT IILELFNNDRKLAYYYIFKGSQFVMRPCSCYQEGGLIRKASRNVALRAFTGIYYLAGFA
FT DQYANMISCAAHPGVIGALFQYVDTMVLQAVFSLSGPKLVRFAAPPEYQGRHACPFSFV
FT ADENYWGIAPGSNAEPVGMYYMDIIQRKSEHNLFVDTFMDIYGSTASIICANIETSLFT
FT SGTNVLNERMQKDFARDTPKPGTLRHQHAIINRFHEPEYAYRLGILADGIIPLSGSFEV
FT DILKEAERLITGEDIRNLPGLRCLCSRGLDAILGLRPIQQKRKKMCYFRTLDGNFHEVT
FT IRSETRDLQVWRDHGYLARPYACHIVDSDGIEFYDKSNGLYKGRVNVLVSGFAIPGRAY
FT QGPSLAGSNRGRPDLSDVPATGSLSNLIYLSKASRLPYRKLKEGVRAADYTVARELACA
FT FRSSRLTRQMDHVTDIAYLNFLRWVLLPYNGQTLRPHPTMWRQTPYPEHVNLKFLSKET
FT ELELFPLKKAPQADLKVNCYARNILASTELTDDILKQSLPIGLNNDSVCGIVIVLELLL
FT IAGVPSKLLPVIGQAIANKDPFIKELSDFNKMIGATTSRIANILTECNTLIGRGVKSSD
FT PSADLYHRVAPEGNRHEAKISRHILIEAINKIYKNEMTDMPPPGDFMLHLITSPLWCKA
FT GSHHHPHFAKYDSRLEFVMDVPADKIAVEAPSVYITQAEKLEHGKTRYIYNCDTVSYLF
FT FDYILHYVECVWSNESVLLNPAAMSVERFSILDYPQYCMIDYTDFNSQHSLESQKLVFE
FT CLRPYLPSEMHPVLDWCIASFEHMEINGQHWLSTLPSGHRATTFINSVLNKAYLIPYIG
FT DAVSFHCGDDVLLCGEYDYQTLIDTLPYELNKSKQSFGPNAEFLRLHRCGGDVIGYPSR
FT AVSSLVSGNWLSKTSWEWQPSLISVTNQCNVIISRSQLNIRFIPAMQQELRNRYADKMS
FT EPFDVSSNYYVMPGCPCYSDAATTIVPNVPQLERSDAPFSQAQKVFDAMRDFCPEFTTV
FT GDVIDKVRARRSSSAVKNIMYDVCAPVAPRISIVVNPAHYQFLLRKKYYPREHIAPTGS
FT DNTDRTKLVFATYDLAPSIAMKSCAVLTPAKIISGHGLRSG"
FT gene 363. .2489
FT /gene="cap"
FT CDS 363. .2489
FT /codon_start=1
FT /gene="cap"
FT /product="capsid protein"
FT /protein_id="AED99799.1"
FT /translation="MSAPEPLNTEVRSPNGVSEAKETQNLAITQSGVSNEKITDTQSDL
FT QTLKKQLQPVSRSTDFETLYNYFYGLQVPASTDRIGNAIQRNIPVNDTNEVVSFPLTAS
FT VSHTFSNTPVPAHIQPLQISVADDCXNYELDESGTLCPALDSSVHVQRATSLASALKVK
FT LTGEVMHSASVRPIQTPQLIAYLYGVLLAVQDRINIHRNQPTNLWRSLCAPGRAAQAKP
FT FFDEFANNKFRAGPLLAPPLPDAGFGPFPAEGLNQNSKLDFKSKGYIFYKQRTYNPDDM
FT NRAFWFLWAIYNRMPGEFQQYYQLNITFCTSELPVQNPIPNADGISNEQCEKALLLLEK
FT IILELFNNDRKLAYYYIFKGSQFVMRPCSCYQEGGLIRKASRNVALRAFTGIYYLAGFA
FT DQYANMISCAAHPGVIGALFQYVDTMVLQAVFSLSGPKLVRFAAPPEYQGRHACPFSFV
FT ADENYWGIAPGSNAEPVGMYYMDIIQRKSEHNLFVDTFMDIYGSTASIICANIETSLFT
FT SGTNVLNERMQKDFARDTPKPGTLRHQHAIINRFHEPEYAYRLGILADGIIPLSGSFEV
FT DILKEAERLITGEDIRNLPGLRCLCSRGLDAILGLRPIQQKRKKMCYFRTLDGNFHEVT
FT IRSETRDLQVWRDHGYLARPYACHIVDSDGIEFYDKSNGLYKGRVNVLVSGFAIPGRAY
FT QGPRSQVATEAAQI"
XX
SQ Sequence 4845 BP; 1296 A; 1281 C; 1016 G; 1251 T; 1 other;
hq607515 Length: 4845 08-MAY-2011 Type: N Check: 3649 ..
1 gcttaaaaag cgaagtccac tttttaagcc ggtttaactt caaccgtgaa
51 taccagggca aaattaatca acaccctcct ggaatcgccg gggtgttgcg
101 agccataaga gactggttct aaaggactga catagcgccg cgagggtagg
151 cggtcgatag cccgtttgag ggggtagtaa tactcctgat tctggtgaag
201 catcgactgg ggccccctag cgtgagctca gcacgttgga aaaacgaaaa
251 actgcatgtg cacagctttg cagtagcgtg agctcagggc accctaaaaa
301 gtgctccgtt tcacaacaac ctatgcgttg ttgtgagact ctagtgtatt
351 gcgtgcaacg gtatgtcagc tcccgagccc ttaaatactg aagtacgctc
401 acctaatggt gttagtgaag ccaaagaaac tcaaaacttg gctatcactc
451 aaagcggtgt gtcgaacgaa aaaataaccg acacacaaag tgatctgcaa
501 acactcaaaa aacagttaca accggtcagc agatccacag atttcgaaac
551 tctttataat tatttttatg gtttacaagt tcctgcttca acagatcgta
601 ttggcaatgc tattcagcgt aacatcccag tcaatgatac gaacgaagtc
651 gttagctttc cgcttacagc atcggtttca cacacatttt ccaatacgcc
701 ggtacctgcc catatacagc ctctccaaat ctcagttgcc gacgactgcr
751 tcaactacga gctagacgag agcggaacat tatgcccagc gttagatagc
801 tctgttcacg tccaaagagc tacctccctt gctagcgctc tcaaagtcaa
851 attaacaggc gaagttatgc attctgcctc agtcaggcca atccagacac
901 cacagttgat cgcttatttg tatggcgtcc tccttgccgt ccaagatcgt
951 atcaacatcc atcgcaacca acctactaac ttatggcgca gcttatgtgc
1001 acctggtcgc gctgctcaag caaagccttt cttcgatgaa ttcgcaaaca
1051 acaaattcag ggcaggtccc ctcttggcac ctcccctccc tgatgctggt
1101 ttcggtccat tcccggcaga aggcctcaat cagaattcca agctcgactt
1151 caaatccaaa ggatacatct tctacaaaca gcgcacttac aacccagatg
1201 atatgaatcg tgctttctgg ttcctttggg cgatctacaa ccgcatgcct
1251 ggagaattcc aacaatacta tcagttgaac atcactttct gcacttccga
1301 gttaccagta caaaatccga taccaaatgc cgatggcatc tcaaatgaac
1351 aatgtgaaaa agcacttctc ctcctcgaaa aaattatcct cgaacttttc
1401 aataacgatc gcaaacttgc ttactactac atcttcaagg gaagccaatt
1451 cgttatgcgt ccttgttcct gctaccaaga aggaggctta attcgcaagg
1501 cttcacgtaa cgttgctctc cgtgctttta ctggcatcta ctacttagcc
1551 ggattcgcag atcaatacgc taacatgatt tcatgtgctg cccatccagg
1601 tgtcattggt gctcttttcc aatatgttga cacaatggtc ttacaagccg
1651 tcttctcgct ttctggtcct aagcttgttc gtttcgctgc cccacccgaa
1701 tatcaaggtc gccacgcttg cccgttctca tttgtggctg acgaaaacta
1751 ctggggtatt gctccaggct caaacgccga gccagttggc atgtactaca
1801 tggatatcat tcaacgcaaa tccgaacata atttgtttgt cgacacattc
1851 atggacatct atggttctac agcttcaatc atttgcgcta atatcgaaac
1901 tagcttattt acttctggca ctaatgtttt gaacgaacgc atgcagaagg
1951 atttcgctcg tgatacaccc aaacctggaa ctcttcgtca ccaacatgct
2001 atcatcaacc gcttccacga accagaatac gcttaccgcc tcggcatcct
2051 tgcagatggc atcattccgc tcagtggctc attcgaagtc gatatcctca
2101 aagaagctga gcgcctcatt actggtgagg atatccgcaa cctcccaggt
2151 ttacgttgct tatgctctcg tggcctcgac gctatcctcg gtctccgtcc
2201 aattcaacag aagcgcaaga agatgtgtta cttccgcacc ctcgacggca
2251 atttccacga agtaacaatc agatcggaga ctcgcgatct acaggtctgg
2301 cgtgaccacg gctacctcgc ccgcccatac gcgtgccaca ttgtcgactc
2351 agatggcatc gaattctacg acaagtccaa tggtctctac aagggacgcg
2401 tcaacgtcct cgtttccgga tttgccattc caggacgcgc atatcagggc
2451 cctcgctcgc aggtagcaac agaggccgcc cagatctaag cgacgtcccg
2501 gcgacaggaa gtctgtccaa cctcatctac ctttctaagg caagtcggct
2551 accataccgt aagctgaagg aaggcgtgag agcggcagac tacaccgtcg
2601 cccgcgagtt agcttgcgct tttcgcagtt ctcgcctaac tcgccaaatg
2651 gatcatgtca cagatatagc ttaccttaat ttcttgagat gggtgttgtt
2701 accttacaac ggtcaaactt tacgaccaca ccccaccatg tggcgtcaaa
2751 caccctaccc cgaacatgtc aatttgaagt tcctaagtaa ggagacggag
2801 ctcgaacttt tcccactgaa gaaggcccca caagccgatc ttaaagtgaa
2851 ttgttacgcg cgaaatatcc ttgcttctac agagcttact gacgatatac
2901 tcaaacagag tttgcccatt ggtctcaata atgactcggt ttgcggaatc
2951 gttattgttt tagagctact tctaattgca ggtgttccga gtaagttact
3001 accagttatt ggtcaagcaa tcgccaataa agatccattt attaaggaac
3051 tgtccgactt caacaagatg ataggagcga ccacttcccg tatcgctaac
3101 attcttacag agtgtaatac attaataggt cgtggtgtta agtcatctga
3151 cccaagtgct gatttgtatc accgggtagc gcccgagggc aataggcacg
3201 aggcgaagat ttctcgacac atcctcatcg aagccatcaa caaaatttac
3251 aaaaacgaaa tgacagacat gcctccaccg ggtgacttca tgctccactt
3301 gataacgagc cctctatggt gtaaggctgg ctctcaccat catccacact
3351 tcgccaagta tgattcgcgc ttggaattcg ttatggatgt tccagcagac
3401 aaaatcgctg ttgaagcacc ctctgtatac attactcaag ccgagaaatt
3451 agaacatggt aaaactagat acatttataa ctgtgataca gtttcatact
3501 tgttctttga ttacatctta cactatgtcg aatgtgtgtg gtcaaatgag
3551 tcagttctac tcaacccagc tgctatgagt gtcgagcgct ttagtatctt
3601 ggattacccg caatattgca tgatcgatta cacagatttc aactctcaac
3651 acagtctcga atcacagaag ctagtgttcg agtgtttgag accatactta
3701 ccaagcgaaa tgcatccagt cttggattgg tgtattgcca gctttgagca
3751 catggaaatc aacggacaac attggttaag cacgttgcct tcaggacata
3801 gggccacaac attcatcaac tcggtcctca ataaagcata cctgatccca
3851 tacataggcg acgcggtttc cttccattgt ggtgacgacg tgttactatg
3901 tggtgagtat gattaccaaa cactcattga taccctaccc tatgaattaa
3951 acaagagcaa acagagcttc ggacctaatg ccgagttctt gcgcttgcat
4001 aggtgtggtg gtgacgttat aggctatcca tccagagctg tttcgagtct
4051 tgtatctgga aattggttaa gcaagacatc atgggagtgg cagccaagtc
4101 tcatttcggt tacaaatcaa tgcaatgtga tcatctcgcg ttcacaattg
4151 aacatcaggt tcatccccgc aatgcaacaa gaactacgca atcgttacgc
4201 agacaagatg agtgaacctt tcgatgtcag ctccaactac tacgtcatgc
4251 caggatgtcc atgctatagc gacgccgcga cgacaatagt accgaatgtt
4301 ccccaactgg aacgttcgga cgcaccgttt tcgcaggcac aaaaagtttt
4351 tgatgctatg cgcgacttct gtcctgagtt cactactgtt ggcgatgtca
4401 tcgataaggt tagagctcgc cgatcttcaa gtgcagtcaa gaacatcatg
4451 tacgacgtat gcgcgcctgt tgcaccacgt atcagtatcg tagtgaaccc
4501 ggcacactat cagttcctct tacgcaagaa gtactaccca cgtgaacaca
4551 ttgcgcctac tggctccgat aatacagatc gaaccaaact cgttttcgca
4601 acatacgatc tcgctccttc aatcgccatg aagtcgtgcg ctgttttgac
4651 cccggctaag ataataagtg gtcacggact acgcagtggt tgaataatct
4701 gccagtacca ggcaacgatt ggtaccggct tggccacgca cggtctgctg
4751 tcttcggacc ctccgcctat aggttaatag gaacacagtg ttactgttgt
4801 gtgtatcgct ctaggcacac gaacgtacta ccccacgttt agttc