Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 strain TVV2-OC3, complete genome.
ACC No: HQ607518
Dated: 2011-05-08 | Length: 4674 | CRC: -311108341
ID HQ607518; SV 1; linear; genomic RNA; STD; VRL; 4674 BP. XX AC HQ607518; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 2 strain TVV2-OC3, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4674 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4674 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX FH Key Location/Qualifiers FH FT source 1. .4674 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /strain="TVV2-OC3" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Nov-2009" FT /db_xref="taxon:674954" FT gene 298. .4607 FT /gene="pol" FT CDS join(298. .2380,2380. .4607) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /protein_id="AED99808.1" FT /translation="MASTLISSDNSATSGTVGEVINNTDTSPPDTPPSDHSNPRLTKIL FT DEMSKKPCVNINEIRKVIRNFQPQIIQPRNGNRPGAQPRTVNSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQNARPRYD FT DHIHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPDTVNDQSFQDF FT LWLIFATHHRMPNQMQNNWPFALNIVSTCAAPGRQVPQAGQLTDARFHAALDTGHRILL FT SMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYI FT VTPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAARADANQVDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNNKLRATFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKRDPGKKPRRGFYTTLDGQVHPITH FT DAPLDEIYQWRDHGNLTRPYSCHILDSEGLEFADVSNGRSRGKLLVVVTTPLKTSAAYQ FT GPQLRAKAGQRYVERINQCGGNVIYPRLSTARACSSSAIDSKTLTLANQLCYLYKSSDL FT HQQLDFTIPQSYLTFLEWLLRMNPDNQKSSIRHFPNYDNQEVITCNLRNLTKEQEIELF FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPKTANDVVCGILLLGEVLWLLRCP FT ISIIVGISRAICRNDSFIKDLSDFNKMLGLTKIPIANCLTELNSLQGRGVTSSDAKRDL FT THRIDDVNPHEAKISREILKEAINHIYKEEINKTEVPDTFKQHVFSSPLWVKKGAHHHP FT HFKSYDNRLEFVENVDLDRVLQSHPAVYITQASKLEHGKTRYIYNCDTVSYIYFDYILN FT YVESVWSNKHVLLNPDYMNPVIFSSLNYDEYCMLDYTDFNSQHSIASMKLVFSCLMPFL FT PYSMHSVLQWCLTSFDNMYINNVHWKSTLPSGHRATTFINSILNRAYLLPFLQVSNAFH FT TGDDVLLCGKADYATLINTVPYELNKTKQSFGSSAEFLRLHKHNNQVSGYPARAISSLV FT SGNWLSYDNPLWQPSLLSIMQQLYTISARSGLLPTLPVTMKLEVRRRYDLPTRLTNGLF FT SGDIVPSGCPCYKSNAALLSAVIPDTVLKAQPKHYDLRTLDILKHTSPWINSESKYLDL FT LDRRHMESNKKNVLYNIQYLPSKMLPMIDVDPSEALPPQKRYHPRSHIAHPLPRDAHLK FT ELRFATCRVGPATAIRLGSLWPANRINLIRPVYV" FT CDS 298. .2427 FT /codon_start=1 FT /gene="pol" FT /product="capsid protein" FT /protein_id="AED99807.1" FT /translation="MASTLISSDNSATSGTVGEVINNTDTSPPDTPPSDHSNPRLTKIL FT DEMSKKPCVNINEIRKVIRNFQPQIIQPRNGNRPGAQPRTVNSFEWVVRIQSTVNTQLL FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQNARPRYD FT DHIHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPDTVNDQSFQDF FT LWLIFATHHRMPNQMQNNWPFALNIVSTCAAPGRQVPQAGQLTDARFHAALDTGHRILL FT SMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYI FT VTPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAARADANQVDASSVFGPAVAEG FT DGFVYDPRRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNNKLRATFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKRDPGKKPRRGFYTTLDGQVHPITH FT DAPLDEIYQWRDHGNLTRPYSCHILDSEGLEFADVSNGRSRGKLLVVVTTPLKTSAAYQ FT GPSFAPKPGSAMWNE" XX SQ Sequence 4674 BP; 1341 A; 1237 C; 860 G; 1236 T; 0 other; hq607518 Length: 4674 08-MAY-2011 Type: N Check: 4126 .. 1 gctttaaaag gagtgacgac ctttaaagcc caggcctaac cagcctggtc 51 agaaactcct ggggtccatc aggagacgga tcgctaacgc gaactggata 101 ttagagtcaa aagccttgtg cgccatggat acttggtaca cttcgcggga 151 gtaggtgacc cgcaagccgt acggttttta gtggattgaa aattgtactg 201 ttaactgcta gccttatgcg gttgctgtgt attgagaggg cttatatgta 251 gcttttatgc ttccttattg tataattgtg tacatctaat tacgataatg 301 gcttcgacgc taatatcgtc tgataattct gccacgtcag gcactgttgg 351 tgaagttata aacaacacag atacttcacc tcccgacact ccacctagtg 401 atcactcaaa tccacgttta acaaagattc tagatgaaat gtccaaaaaa 451 ccttgtgtaa atattaatga aataagaaaa gttattagaa atttccaacc 501 tcaaattatt caacctcgta atggtaatcg cccaggcgct caaccacgca 551 cagtaaattc tttcgaatgg gttgtccgta ttcaaagcac tgtcaatact 601 caactacttg gtgcaactaa tacgattcct gaacagactc tcaacctcga 651 tatctcgttt acagatgatt ctactacaat tactccagct tccattccag 701 gctctatttc gatgctcgac aactcacgcc atatccctgc gatccagagc 751 atgatccaga atttcaaagc ccgttactta ggtaatctcc aagatacagc 801 ccaactcaat tctccgcagt atcctcaact tcttgcctat ctattcggac 851 aattaatcgc catcaaggac cgcctcgatc ttttccgacc atcgaaccca 901 ctttcatttg ctgatgcttt atttggcttt actttagccc agaacgcacg 951 ccctcgctac gatgaccaca tacatgctaa ggcatgtaca ggacctatcg 1001 tcatcccagc agctacaaat gcagattgcg gtccttgcgg cttcgtccaa 1051 atcaatgcta atcagggcct cactttaccc ctcggcgctt gcctttttgt 1101 taatccagat acagttaacg atcaatcctt ccaagatttc ctttggctca 1151 ttttcgcaac acaccatcgc atgccaaacc agatgcaaaa taactggcca 1201 tttgctctca atatcgtctc gacatgtgcc gctccaggtc gtcaggttcc 1251 tcaagccggc caactcaccg atgccaggtt tcacgctgcc ctcgatacag 1301 gtcatcgcat cttactctca atgttcaacg atgatgaaga aacactccgc 1351 tactatcaac gcaaaggaat agaaacgatg ttcagaccat gttgcttcta 1401 cactgaaggc ggtttgctca gaaaagctac aagatatgtt tcaatggttc 1451 cactcagcgg cttatattac tacaatggcg cctcttcata cattgttact 1501 ccaatccaca ctgatgcaca cccaggaatc acagctgcaa tcgaatcctt 1551 cgtcgatatc atggtcttac aagcggtctt ttctttcacg ggccctaaag 1601 ttgtcgctgc tagagccgac gcaaaccaag ttgatgcttc ctcagtcttc 1651 ggccctgctg tcgctgaagg agatggtttt gtctacgatc ctcgccgtcc 1701 agcccctccg ctctccgcat tctacagtga attcatccac agaccagccg 1751 aacaacgcat cttccagatg gcgatgagcc agatttacgg atcccatgcc 1801 cccctcatca tcgctaacgt catcaattcc atccacaatt gcaagacaaa 1851 gatcgtcaac aacaaattac gcgccacttt cgttcgtcgt ccacccggtg 1901 ctccccatct caaggcggac accgcaatca tcaaccgctt ccatgatcca 1951 gaactcgcct atgccctcgg cattctcgct gatggtatag ctccactcga 2001 tggaacacac gaatacaaca tcctcgacga actcgattac ttgttcaacg 2051 gtggtgacat ccgcaattgc ttcggcctca acgcgctcaa cactcgcgga 2101 ttaggccaaa tcgtccacgt tcgtccgaag cgcgatccag gaaagaaacc 2151 tcgccgcggt ttctacacca ccctcgatgg acaagtccac cccatcacac 2201 acgatgctcc actcgatgag atttaccagt ggcgtgacca cggaaatctt 2251 acacgtccat attcgtgcca catcctcgac agcgaaggat tggaattcgc 2301 tgacgtctcc aacggacggt cacggggcaa gctcctcgtt gtcgtcacca 2351 caccgctcaa gacaagcgct gcctaccagg gccccagctt cgcgccaaag 2401 ccgggcagcg ctatgtggaa cgaataaacc aatgcggggg caacgtcatc 2451 tatccgcgct tgagcactgc tcgcgcctgc agctcgtctg ccattgatag 2501 taagacgttg accctcgcaa accaactgtg ctacctatac aagtcttctg 2551 acttgcacca acagttggac ttcacgatac cacaatccta cttaacattt 2601 cttgaatggc tactcagaat gaatcccgat aatcaaaaaa gttcaattcg 2651 ccacttccca aattacgata atcaagaagt tattacatgc aatttacgaa 2701 acctcacaaa agaacaagaa attgaactat ttccaataaa agacataatc 2751 caagctaacc gccgcgtaaa tgcctacgcg cgaaatctcc ttgacgcctc 2801 accacttcct gattttgctc tacagcagat gctcttacca aaaacagcta 2851 atgatgtagt ttgcggaatc ctgttacttg gtgaagtatt atggttactt 2901 cgctgtccca tctcgatcat cgtaggtatt tcccgtgcaa tatgtcgcaa 2951 tgatagtttc ataaaagatt tatcggattt caacaaaatg ttaggcttaa 3001 ctaagatccc aatagctaac tgtttgactg aattaaacag tctacagggt 3051 agaggagtca cttcaagcga tgccaaaaga gatttgaccc accgaataga 3101 cgatgtcaat cctcatgagg cgaaaataag tagagaaatc ctcaaagaag 3151 caatcaatca tatatacaaa gaagaaatca acaaaacaga agtacccgat 3201 acattcaaac aacatgtatt ctcatctcca ttatgggtta agaaaggcgc 3251 acaccatcac cctcacttca aatcttacga taaccgacta gagtttgtcg 3301 agaatgttga cttagacagg gttttacaat cacaccctgc tgtctacatt 3351 acgcaagcct caaaacttga acacggtaag acacgataca tttacaattg 3401 tgatacagtc agttacatat attttgatta tatcttgaac tacgtcgaga 3451 gtgtttggtc caataaacat gtgcttctaa accctgatta catgaaccca 3501 gtcattttta gtagtcttaa ttatgatgag tactgtatgt tggattacac 3551 tgacttcaat tcccaacatt ctattgcaag tatgaagcta gtgttttcct 3601 gtctcatgcc atttttacct tactcaatgc attcagtatt acaatggtgc 3651 cttacatcat tcgataacat gtacatcaat aatgtccact ggaaatcgac 3701 attaccatca ggacacagag caacaacatt tatcaattct atactaaaca 3751 gggcatactt gttgccgttt ctgcaagttt caaatgcatt ccacacaggt 3801 gatgacgttc tgctatgcgg aaaggctgac tatgcaacct taattaacac 3851 ggtaccttat gaactcaata aaactaagca atcgttcggg tcttcagctg 3901 aatttctacg tcttcataaa cataacaacc aggtctcggg ctacccagct 3951 cgtgcaatta gtagtctcgt aagcggaaac tggttgtcat acgataatcc 4001 actatggcaa ccttcactac tgtcaattat gcaacaattg tacaccatat 4051 cagcgagatc aggcttgtta ccaactcttc ctgtcacgat gaagttagag 4101 gttcggcgac ggtacgactt acctacacgg ctcacaaatg gattgttctc 4151 tggtgatatt gtcccaagtg gttgcccatg ttataagtca aatgctgcct 4201 tactaagcgc ggtcatccct gatacagtac ttaaggcaca accaaagcat 4251 tacgacttac gtactttgga catcctaaaa catacttcac cttggatcaa 4301 ttctgaatcc aaatatttgg atctcctgga tcgccgtcac atggaatcga 4351 ataagaaaaa tgtattatat aatattcagt atttaccttc caagatgtta 4401 ccaatgattg atgttgaccc atctgaggct cttcctccac aaaaacggta 4451 tcatccacgt tcccacatcg cacacccact cccacgtgat gctcatctca 4501 aggaattgag attcgccacg tgtagagtgg gcccggctac agcgataaga 4551 ttaggatcgc tttggcctgc gaacagaata aacctaatca ggccagtgta 4601 cgtctaagta caactgccaa aaatcttaca aaactactcg gctagagtag 4651 gagagtaata tcaactctta tgtc