Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 strain TVV2-OC3, complete genome.
ACC No: HQ607518
Dated: 2011-05-08 | Length: 4674 | CRC: -311108341
ID HQ607518; SV 1; linear; genomic RNA; STD; VRL; 4674 BP.
XX
AC HQ607518;
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DT 08-MAY-2011 (Rel. 108, Created)
DT 08-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Trichomonas vaginalis virus 2 strain TVV2-OC3, complete genome.
XX
KW .
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OS Trichomonas vaginalis virus 2
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
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RN [1]
RP 1-4674
RX DOI; 10.1128/JVI.00220-11.
RX PUBMED; 21345965.
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W.,
RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H.,
RA Singh B.N., Fichorova R.N., Nibert M.L.;
RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by
RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)";
RL J. Virol. 85(9):4258-4270(2011).
XX
RN [2]
RP 1-4674
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A.,
RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.;
RT ;
RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Molecular Genetics, Harvard Medical School,
RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4674
FT /organism="Trichomonas vaginalis virus 2"
FT /host="Trichomonas vaginalis"
FT /strain="TVV2-OC3"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Nov-2009"
FT /db_xref="taxon:674954"
FT gene 298. .4607
FT /gene="pol"
FT CDS join(298. .2380,2380. .4607)
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /note="translated via ribosomal frameshift"
FT /protein_id="AED99808.1"
FT /translation="MASTLISSDNSATSGTVGEVINNTDTSPPDTPPSDHSNPRLTKIL
FT DEMSKKPCVNINEIRKVIRNFQPQIIQPRNGNRPGAQPRTVNSFEWVVRIQSTVNTQLL
FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN
FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQNARPRYD
FT DHIHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPDTVNDQSFQDF
FT LWLIFATHHRMPNQMQNNWPFALNIVSTCAAPGRQVPQAGQLTDARFHAALDTGHRILL
FT SMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYI
FT VTPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAARADANQVDASSVFGPAVAEG
FT DGFVYDPRRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT
FT KIVNNKLRATFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL
FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKRDPGKKPRRGFYTTLDGQVHPITH
FT DAPLDEIYQWRDHGNLTRPYSCHILDSEGLEFADVSNGRSRGKLLVVVTTPLKTSAAYQ
FT GPQLRAKAGQRYVERINQCGGNVIYPRLSTARACSSSAIDSKTLTLANQLCYLYKSSDL
FT HQQLDFTIPQSYLTFLEWLLRMNPDNQKSSIRHFPNYDNQEVITCNLRNLTKEQEIELF
FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPKTANDVVCGILLLGEVLWLLRCP
FT ISIIVGISRAICRNDSFIKDLSDFNKMLGLTKIPIANCLTELNSLQGRGVTSSDAKRDL
FT THRIDDVNPHEAKISREILKEAINHIYKEEINKTEVPDTFKQHVFSSPLWVKKGAHHHP
FT HFKSYDNRLEFVENVDLDRVLQSHPAVYITQASKLEHGKTRYIYNCDTVSYIYFDYILN
FT YVESVWSNKHVLLNPDYMNPVIFSSLNYDEYCMLDYTDFNSQHSIASMKLVFSCLMPFL
FT PYSMHSVLQWCLTSFDNMYINNVHWKSTLPSGHRATTFINSILNRAYLLPFLQVSNAFH
FT TGDDVLLCGKADYATLINTVPYELNKTKQSFGSSAEFLRLHKHNNQVSGYPARAISSLV
FT SGNWLSYDNPLWQPSLLSIMQQLYTISARSGLLPTLPVTMKLEVRRRYDLPTRLTNGLF
FT SGDIVPSGCPCYKSNAALLSAVIPDTVLKAQPKHYDLRTLDILKHTSPWINSESKYLDL
FT LDRRHMESNKKNVLYNIQYLPSKMLPMIDVDPSEALPPQKRYHPRSHIAHPLPRDAHLK
FT ELRFATCRVGPATAIRLGSLWPANRINLIRPVYV"
FT CDS 298. .2427
FT /codon_start=1
FT /gene="pol"
FT /product="capsid protein"
FT /protein_id="AED99807.1"
FT /translation="MASTLISSDNSATSGTVGEVINNTDTSPPDTPPSDHSNPRLTKIL
FT DEMSKKPCVNINEIRKVIRNFQPQIIQPRNGNRPGAQPRTVNSFEWVVRIQSTVNTQLL
FT GATNTIPEQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGN
FT LQDTAQLNSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSFADALFGFTLAQNARPRYD
FT DHIHAKACTGPIVIPAATNADCGPCGFVQINANQGLTLPLGACLFVNPDTVNDQSFQDF
FT LWLIFATHHRMPNQMQNNWPFALNIVSTCAAPGRQVPQAGQLTDARFHAALDTGHRILL
FT SMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLSGLYYYNGASSYI
FT VTPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAARADANQVDASSVFGPAVAEG
FT DGFVYDPRRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT
FT KIVNNKLRATFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGTHEYNIL
FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHVRPKRDPGKKPRRGFYTTLDGQVHPITH
FT DAPLDEIYQWRDHGNLTRPYSCHILDSEGLEFADVSNGRSRGKLLVVVTTPLKTSAAYQ
FT GPSFAPKPGSAMWNE"
XX
SQ Sequence 4674 BP; 1341 A; 1237 C; 860 G; 1236 T; 0 other;
hq607518 Length: 4674 08-MAY-2011 Type: N Check: 4126 ..
1 gctttaaaag gagtgacgac ctttaaagcc caggcctaac cagcctggtc
51 agaaactcct ggggtccatc aggagacgga tcgctaacgc gaactggata
101 ttagagtcaa aagccttgtg cgccatggat acttggtaca cttcgcggga
151 gtaggtgacc cgcaagccgt acggttttta gtggattgaa aattgtactg
201 ttaactgcta gccttatgcg gttgctgtgt attgagaggg cttatatgta
251 gcttttatgc ttccttattg tataattgtg tacatctaat tacgataatg
301 gcttcgacgc taatatcgtc tgataattct gccacgtcag gcactgttgg
351 tgaagttata aacaacacag atacttcacc tcccgacact ccacctagtg
401 atcactcaaa tccacgttta acaaagattc tagatgaaat gtccaaaaaa
451 ccttgtgtaa atattaatga aataagaaaa gttattagaa atttccaacc
501 tcaaattatt caacctcgta atggtaatcg cccaggcgct caaccacgca
551 cagtaaattc tttcgaatgg gttgtccgta ttcaaagcac tgtcaatact
601 caactacttg gtgcaactaa tacgattcct gaacagactc tcaacctcga
651 tatctcgttt acagatgatt ctactacaat tactccagct tccattccag
701 gctctatttc gatgctcgac aactcacgcc atatccctgc gatccagagc
751 atgatccaga atttcaaagc ccgttactta ggtaatctcc aagatacagc
801 ccaactcaat tctccgcagt atcctcaact tcttgcctat ctattcggac
851 aattaatcgc catcaaggac cgcctcgatc ttttccgacc atcgaaccca
901 ctttcatttg ctgatgcttt atttggcttt actttagccc agaacgcacg
951 ccctcgctac gatgaccaca tacatgctaa ggcatgtaca ggacctatcg
1001 tcatcccagc agctacaaat gcagattgcg gtccttgcgg cttcgtccaa
1051 atcaatgcta atcagggcct cactttaccc ctcggcgctt gcctttttgt
1101 taatccagat acagttaacg atcaatcctt ccaagatttc ctttggctca
1151 ttttcgcaac acaccatcgc atgccaaacc agatgcaaaa taactggcca
1201 tttgctctca atatcgtctc gacatgtgcc gctccaggtc gtcaggttcc
1251 tcaagccggc caactcaccg atgccaggtt tcacgctgcc ctcgatacag
1301 gtcatcgcat cttactctca atgttcaacg atgatgaaga aacactccgc
1351 tactatcaac gcaaaggaat agaaacgatg ttcagaccat gttgcttcta
1401 cactgaaggc ggtttgctca gaaaagctac aagatatgtt tcaatggttc
1451 cactcagcgg cttatattac tacaatggcg cctcttcata cattgttact
1501 ccaatccaca ctgatgcaca cccaggaatc acagctgcaa tcgaatcctt
1551 cgtcgatatc atggtcttac aagcggtctt ttctttcacg ggccctaaag
1601 ttgtcgctgc tagagccgac gcaaaccaag ttgatgcttc ctcagtcttc
1651 ggccctgctg tcgctgaagg agatggtttt gtctacgatc ctcgccgtcc
1701 agcccctccg ctctccgcat tctacagtga attcatccac agaccagccg
1751 aacaacgcat cttccagatg gcgatgagcc agatttacgg atcccatgcc
1801 cccctcatca tcgctaacgt catcaattcc atccacaatt gcaagacaaa
1851 gatcgtcaac aacaaattac gcgccacttt cgttcgtcgt ccacccggtg
1901 ctccccatct caaggcggac accgcaatca tcaaccgctt ccatgatcca
1951 gaactcgcct atgccctcgg cattctcgct gatggtatag ctccactcga
2001 tggaacacac gaatacaaca tcctcgacga actcgattac ttgttcaacg
2051 gtggtgacat ccgcaattgc ttcggcctca acgcgctcaa cactcgcgga
2101 ttaggccaaa tcgtccacgt tcgtccgaag cgcgatccag gaaagaaacc
2151 tcgccgcggt ttctacacca ccctcgatgg acaagtccac cccatcacac
2201 acgatgctcc actcgatgag atttaccagt ggcgtgacca cggaaatctt
2251 acacgtccat attcgtgcca catcctcgac agcgaaggat tggaattcgc
2301 tgacgtctcc aacggacggt cacggggcaa gctcctcgtt gtcgtcacca
2351 caccgctcaa gacaagcgct gcctaccagg gccccagctt cgcgccaaag
2401 ccgggcagcg ctatgtggaa cgaataaacc aatgcggggg caacgtcatc
2451 tatccgcgct tgagcactgc tcgcgcctgc agctcgtctg ccattgatag
2501 taagacgttg accctcgcaa accaactgtg ctacctatac aagtcttctg
2551 acttgcacca acagttggac ttcacgatac cacaatccta cttaacattt
2601 cttgaatggc tactcagaat gaatcccgat aatcaaaaaa gttcaattcg
2651 ccacttccca aattacgata atcaagaagt tattacatgc aatttacgaa
2701 acctcacaaa agaacaagaa attgaactat ttccaataaa agacataatc
2751 caagctaacc gccgcgtaaa tgcctacgcg cgaaatctcc ttgacgcctc
2801 accacttcct gattttgctc tacagcagat gctcttacca aaaacagcta
2851 atgatgtagt ttgcggaatc ctgttacttg gtgaagtatt atggttactt
2901 cgctgtccca tctcgatcat cgtaggtatt tcccgtgcaa tatgtcgcaa
2951 tgatagtttc ataaaagatt tatcggattt caacaaaatg ttaggcttaa
3001 ctaagatccc aatagctaac tgtttgactg aattaaacag tctacagggt
3051 agaggagtca cttcaagcga tgccaaaaga gatttgaccc accgaataga
3101 cgatgtcaat cctcatgagg cgaaaataag tagagaaatc ctcaaagaag
3151 caatcaatca tatatacaaa gaagaaatca acaaaacaga agtacccgat
3201 acattcaaac aacatgtatt ctcatctcca ttatgggtta agaaaggcgc
3251 acaccatcac cctcacttca aatcttacga taaccgacta gagtttgtcg
3301 agaatgttga cttagacagg gttttacaat cacaccctgc tgtctacatt
3351 acgcaagcct caaaacttga acacggtaag acacgataca tttacaattg
3401 tgatacagtc agttacatat attttgatta tatcttgaac tacgtcgaga
3451 gtgtttggtc caataaacat gtgcttctaa accctgatta catgaaccca
3501 gtcattttta gtagtcttaa ttatgatgag tactgtatgt tggattacac
3551 tgacttcaat tcccaacatt ctattgcaag tatgaagcta gtgttttcct
3601 gtctcatgcc atttttacct tactcaatgc attcagtatt acaatggtgc
3651 cttacatcat tcgataacat gtacatcaat aatgtccact ggaaatcgac
3701 attaccatca ggacacagag caacaacatt tatcaattct atactaaaca
3751 gggcatactt gttgccgttt ctgcaagttt caaatgcatt ccacacaggt
3801 gatgacgttc tgctatgcgg aaaggctgac tatgcaacct taattaacac
3851 ggtaccttat gaactcaata aaactaagca atcgttcggg tcttcagctg
3901 aatttctacg tcttcataaa cataacaacc aggtctcggg ctacccagct
3951 cgtgcaatta gtagtctcgt aagcggaaac tggttgtcat acgataatcc
4001 actatggcaa ccttcactac tgtcaattat gcaacaattg tacaccatat
4051 cagcgagatc aggcttgtta ccaactcttc ctgtcacgat gaagttagag
4101 gttcggcgac ggtacgactt acctacacgg ctcacaaatg gattgttctc
4151 tggtgatatt gtcccaagtg gttgcccatg ttataagtca aatgctgcct
4201 tactaagcgc ggtcatccct gatacagtac ttaaggcaca accaaagcat
4251 tacgacttac gtactttgga catcctaaaa catacttcac cttggatcaa
4301 ttctgaatcc aaatatttgg atctcctgga tcgccgtcac atggaatcga
4351 ataagaaaaa tgtattatat aatattcagt atttaccttc caagatgtta
4401 ccaatgattg atgttgaccc atctgaggct cttcctccac aaaaacggta
4451 tcatccacgt tcccacatcg cacacccact cccacgtgat gctcatctca
4501 aggaattgag attcgccacg tgtagagtgg gcccggctac agcgataaga
4551 ttaggatcgc tttggcctgc gaacagaata aacctaatca ggccagtgta
4601 cgtctaagta caactgccaa aaatcttaca aaactactcg gctagagtag
4651 gagagtaata tcaactctta tgtc