Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 strain TVV1-OC5, complete genome.
ACC No: HQ607523
Dated: 2011-05-08 | Length: 4680 | CRC: 1437201674
ID HQ607523; SV 1; linear; genomic RNA; STD; VRL; 4680 BP.
XX
AC HQ607523;
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DT 08-MAY-2011 (Rel. 108, Created)
DT 08-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Trichomonas vaginalis virus 1 strain TVV1-OC5, complete genome.
XX
KW .
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OS Trichomonas vaginalis virus 1
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4680
RX DOI; 10.1128/JVI.00220-11.
RX PUBMED; 21345965.
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W.,
RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H.,
RA Singh B.N., Fichorova R.N., Nibert M.L.;
RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by
RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)";
RL J. Virol. 85(9):4258-4270(2011).
XX
RN [2]
RP 1-4680
RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A.,
RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.;
RT ;
RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology and Molecular Genetics, Harvard Medical School,
RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4680
FT /organism="Trichomonas vaginalis virus 1"
FT /host="Trichomonas vaginalis"
FT /strain="TVV1-OC5"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Jan-2010"
FT /db_xref="taxon:674953"
FT gene 323. .4613
FT /gene="pol"
FT CDS join(323. .2349,2351. .4613)
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /note="translated via ribosomal frameshift"
FT /protein_id="AED99820.1"
FT /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN
FT DFFFNFLRTSTSTHISDSPGVSFVLKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN
FT NTLEVDYGFGQDVSRATGTITIPVFDGEKYKEVARALSLIFSKKGTAIDTTSQTIQDTL
FT KNSDLTIATVAAGYYTALAARHELTKAESTAAHRIPFATALSDTFSAAGDALRSSHVIS
FT SCLRCPASNNAQRQVTVGTNMWTNVSVENIAVQGLIIPNPNDVSFFIPNKSLPPSWWCA
FT IWLLNAFLHSFIAQTRIHIFITPGETYNLAPFTDADIYEAIPILLGMSKTSRPVPESVE
FT SMLYAYGAQMVIQPHSLYTEGGIVRRMIFTVPHLPAHGYFIANTEYSRYMNIAVPNDPR
FT TAKDYIIGVGTGLLQIILAYQAAFSCAGPIALHWHDNDAISNGMDTVAAAYLEGRYFTI
FT PMAVNVATNIAQYTTRVRADPQYKHTLDRILPRIFGPSTDTVFNFIESAITSSWVSINA
FT TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR
FT NCPILRTLKAAEAEETVTFMCTGKIGSIFAVDGTMRTLKRYQTVDLADLGWTSHGKVMK
FT PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLLSKAVRCGPIIPSVRHHF
FT NIRHIITVKRNGNEYVFIPGYGWVLQDDYLVNSVKMTGVDQLPPNQLPYGDDLLFIYAE
FT ILLYNYISLFPKFRYKNPDLLNQETELQLFPLKTDSAARNKANFYARSLWNEAKTDKTA
FT FRPGTYNDTVAGLLMWQQCALMWSLPRSVINRTISGVCDALTERTSLALLKRISDWLKQ
FT LGLACSPIHRLFIELPTLLGRGAIPGDNVKDMKHRLKFDPSITVDVPKDELHALIYRLL
FT SRNLNITKVDSFEHHLEERLLWSKSGSHYYPDDRINQLLPKQPTRKEFLDVVTVDYIKE
FT CKPHVFIRQSRKLEHGKERFIYNCDTISYVYFDFILKLFEAGWQDSEAILSPGDYTSER
FT LHTRISNYKYKAMLDYTDFNSQHTIQSMRLIFETMKELLPPETTFALDWCIASFDNMYT
FT SDGHKWVSTLPSGHRATTFINTVLNWCYTQMVGLKFNSFMCAGDDVILLSQEPISLAPI
FT LTSHFKFNPSKQSTGTRGEFLRKHYTTEGVFAYPTRAIASLVSGNWLSQSLRENTPILV
FT PIQNGVDRLRSRAGLLGVPWILGLSELTEREAIPRDVSMALLNSHAAGPGLITRNYSSF
FT TVTPKPPKLTSTLEYTATRFGVQDLSKHVPWEQLTLEERNKLGKQIKKMSHRHCSQAKI
FT TYTCVHDFYKPSGLPTVLSGASQPSLSMAWWQAMLKEAMQDNFTKKLDAQMFASNACTD
FT CVSGDAFLQASAKTAGVLFTSSILSSS"
FT CDS 323. .2359
FT /codon_start=1
FT /gene="pol"
FT /product="capsid protein"
FT /protein_id="AED99819.1"
FT /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN
FT DFFFNFLRTSTSTHISDSPGVSFVLKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN
FT NTLEVDYGFGQDVSRATGTITIPVFDGEKYKEVARALSLIFSKKGTAIDTTSQTIQDTL
FT KNSDLTIATVAAGYYTALAARHELTKAESTAAHRIPFATALSDTFSAAGDALRSSHVIS
FT SCLRCPASNNAQRQVTVGTNMWTNVSVENIAVQGLIIPNPNDVSFFIPNKSLPPSWWCA
FT IWLLNAFLHSFIAQTRIHIFITPGETYNLAPFTDADIYEAIPILLGMSKTSRPVPESVE
FT SMLYAYGAQMVIQPHSLYTEGGIVRRMIFTVPHLPAHGYFIANTEYSRYMNIAVPNDPR
FT TAKDYIIGVGTGLLQIILAYQAAFSCAGPIALHWHDNDAISNGMDTVAAAYLEGRYFTI
FT PMAVNVATNIAQYTTRVRADPQYKHTLDRILPRIFGPSTDTVFNFIESAITSSWVSINA
FT TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR
FT NCPILRTLKAAEAEETVTFMCTGKIGSIFAVDGTMRTLKRYQTVDLADLGWTSHGKVMK
FT PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLFE"
XX
SQ Sequence 4680 BP; 1377 A; 1198 C; 928 G; 1177 T; 0 other;
hq607523 Length: 4680 08-MAY-2011 Type: N Check: 6813 ..
1 gcaaaaagga gggagtagtc cgctcttctc ctttttgcac tcaacatttt
51 tactccatca tgacgaatcc atgacatgga catgtaacaa gcgttttgtc
101 ctcgatgatt gccatcctcg tgtgaactcc gggcaccgct tgcactgatg
151 atacctctta caaagctgga gagacacccg tcttgaagag ccgtaatgta
201 tcctctgcgc ctgggaccta atggtgattt tgctgtaggt actttttaag
251 ggaggaatta gggttgaaca tactagttcg ctagtatgcc ttttttctac
301 tttattaaga aattgaatac ccatggaggc ttctgctaat gggttatcac
351 atgatgataa tgcgaataaa tcgcaaaatg ttggaccttc tactcttccg
401 gggtcagata aacaaggagg agaaaaccac gaaaattctt ttaattcttt
451 ttcaaatgat ttctttttta attttttacg cacatctacg agtactcaca
501 tttcagacag tccaggagtt tcttttgttt tgaaggatgg aacaccatat
551 acatccgcta ccatccaatc cgctgtcggt cgtcttacac acaatgtcgt
601 cgcatcagca gtccaactca atattacagc aaacaatacg ttagaggtgg
651 actacggttt cggtcaggat gtttcaagag ctacaggaac catcacaatc
701 ccagtcttcg atggcgaaaa gtacaaagag gtagctcgcg ctttatcatt
751 aattttcagt aagaaaggta cggcgattga cactacgtct caaactattc
801 aagacaccct caaaaactcc gatctcacta ttgctaccgt cgctgctgga
851 tactacacag ccttagctgc tcgccatgaa cttaccaaag cagaaagcac
901 tgcagctcat cgcattccat tcgctacagc tttatcagat acattctcag
951 cagccggcga cgcgctgcgt tcaagccacg tcatctcttc ttgcttacgc
1001 tgccctgcct caaacaacgc acaacgacag gttacagtcg gaaccaacat
1051 gtggacgaac gtctccgtcg aaaacatcgc agtacaaggc ttgataattc
1101 caaatccaaa cgacgtatcg ttcttcattc cgaacaaatc tcttccacct
1151 tcctggtggt gcgcaatctg gcttctcaac gctttcctcc acagcttcat
1201 cgcacaaacc cgcatccaca tcttcatcac gccaggtgaa acttacaatc
1251 ttgcgccatt cacagatgcc gatatctacg aggctattcc tatcttactt
1301 ggaatgtcga aaacatcacg cccagttcca gaaagcgtcg aaagcatgct
1351 ctacgcatac ggcgcgcaga tggttatcca gccacactcg ctttacacag
1401 aaggcggtat agtcagaaga atgatcttta ccgtcccaca tcttccagca
1451 catggctact tcatagcaaa cacagaatac tcgagataca tgaacatcgc
1501 tgttccaaac gacccacgta cagctaagga ttacataatt ggtgtcggaa
1551 ctggcctctt acagatcata ctcgcctacc aagctgcttt tagctgcgct
1601 ggtccaatcg ctctccattg gcacgacaat gacgctatct caaatggcat
1651 ggatacggtt gcagctgctt acctcgaagg acggtacttc actatcccaa
1701 tggccgtcaa tgttgccaca aacatcgccc aatacactac aagagtcagg
1751 gctgacccac agtacaaaca cacactcgat cgaatcttac cacgcatctt
1801 cggtccatcg actgacacag tcttcaactt catcgaatcc gcaatcacat
1851 catcttgggt ctcgatcaac gcgacgaagc gtaacggtcg ggccagaaag
1901 ttcaggaccg ccttcatcaa tcgttttcat gatccagaat tcgcctacat
1951 gtttggcatc accggcaacg gtatcgagcg gatggaaggc aaggttacat
2001 ccaacatcgc acaagaagtc gaatacctca ccaacggcgg tgaccttcgc
2051 aactgcccta tccttcgcac cttaaaagct gcggaggcag aagagaccgt
2101 cacttttatg tgtacgggaa agatcggttc catcttcgcc gtcgatggta
2151 caatgcgcac gctcaagcgg taccaaacag tcgacctcgc cgacctcgga
2201 tggacatcgc atggcaaggt catgaaaccg tacgccttca gggccccagt
2251 catccaagga atcaccgtct gcaagacagc ttacacatcc acagctatcg
2301 acatcgttac aacagtcttc ggccccttac gcctccgcgt aggcaccctt
2351 tttgagtaag gctgtacgtt gtggccctat aataccatcc gtcaggcatc
2401 actttaacat aagacacatc ataacagtta aacgcaatgg taacgaatac
2451 gtatttatcc caggttacgg atgggtatta caggatgatt atttggtgaa
2501 ttccgtcaag atgactggtg tagatcaact acctcccaac cagttaccct
2551 atggcgatga tcttttattt atatatgcag aaattttact ttataactac
2601 atatctcttt ttcctaaatt cagatacaaa aatccagact tattaaatca
2651 agaaacagaa ttacagctct tcccacttaa aaccgactca gctgccagaa
2701 ataaagccaa cttttatgct agatcactat ggaacgaagc aaaaacagac
2751 aaaacagctt ttagaccggg aacatacaat gacacagtag ctggtctatt
2801 gatgtggcaa caatgtgctc tcatgtggtc actgcctcgc tcagttatca
2851 acagaacaat tagcggcgtt tgtgatgcat taaccgaaag gacttcactc
2901 gcgctattaa aacgtatctc cgattggttg aaacaactcg ggctggcttg
2951 ctcaccaatc catcgcttgt tcatagagct cccaacatta ctaggacgcg
3001 gagcaatccc aggcgataac gtgaaagaca tgaagcacag actcaaattc
3051 gatccatcta tcacagtaga cgttccaaaa gacgagttac atgccctaat
3101 ctacagacta ttatcaagaa atctcaacat aactaaagtt gacagcttcg
3151 aacaccacct agaagagcgt ttgctttggt ccaaatccgg cagtcattat
3201 tatccggacg acagaatcaa tcagctactt ccaaaacaac ccacaaggaa
3251 agaattctta gatgttgtaa ccgtagatta catcaaggaa tgcaagcctc
3301 acgtcttcat aaggcaatca cgtaagctag aacacggtaa ggaacgtttc
3351 atttataatt gcgatacgat ctcctatgtc tattttgatt ttatcctgaa
3401 gctcttcgaa gcgggatggc aagatagcga agcaatacta tcgccaggcg
3451 actatactag tgaacgctta catacaagaa tttcaaacta caaatataag
3501 gctatgctag attatacgga tttcaattca cagcatacaa tccaaagcat
3551 gagactgata ttcgaaacga tgaaggagtt actaccaccc gaaactactt
3601 tcgcactcga ttggtgtatt gcctcattcg ataacatgta cacatccgat
3651 ggtcataaat gggtctcgac tctcccaagc ggacatcgag ccacaacctt
3701 catcaacaca gtcctaaatt ggtgctacac acagatggta ggtcttaagt
3751 ttaacagttt tatgtgcgct ggtgatgatg tcattttatt gtctcaagag
3801 ccaatatcac tagccccaat tcttacatca cacttcaagt tcaatcccag
3851 caaacaaagt acaggtacaa gaggtgaatt cttacgcaag cattacacta
3901 cagaaggcgt gtttgcatac ccaacacgag caattgcaag cttagtaagc
3951 ggaaattggt taagtcaatc tttaagagag aacaccccaa tcttggtccc
4001 aatacaaaac ggagtcgaca gacttcgaag cagagcaggt ctactcggag
4051 tcccatggat tttgggcctc tcggagctca cggagcgaga ggccattcct
4101 agggatgtca gcatggctct gttgaattca cacgcagcag gacccggttt
4151 gatcactcgg aactacagtt ctttcacagt taccccgaaa ccacctaagc
4201 taactagcac actagagtac acagcaaccc gttttggtgt ccaggacctg
4251 tccaaacacg taccatggga acaacttaca ctggaagaac gtaataagtt
4301 agggaaacaa attaagaaaa tgagtcacag gcattgtagc caggcaaaga
4351 taacatacac ttgtgttcac gatttttaca aaccaagtgg cctccccacg
4401 gtgttatctg gtgccagcca gccatcgttg tcgatggcgt ggtggcaggc
4451 gatgcttaaa gaagcaatgc aggacaattt tactaagaag ttagatgcac
4501 aaatgttcgc ttcgaatgca tgtacagact gcgtcagcgg tgatgcattc
4551 ttgcaagcga gcgccaaaac tgctggtgta ttattcacta gctcgattct
4601 atcttcttca taacgtacag caaaaaagtc tctatagttg ctcaggacat
4651 atatgagcca gatggccccg ctataccttc