Sequence of DPV Trichomonas vaginalis virus 2
Trichomonas vaginalis virus 2 strain TVV2-OC5, complete genome.
ACC No: HQ607524
Dated: 2011-05-08 | Length: 4671 | CRC: 784695631
ID HQ607524; SV 1; linear; genomic RNA; STD; VRL; 4671 BP. XX AC HQ607524; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 2 strain TVV2-OC5, complete genome. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4671 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4671 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX FH Key Location/Qualifiers FH FT source 1. .4671 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginalis" FT /strain="TVV2-OC5" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jan-2010" FT /db_xref="taxon:674954" FT gene 296. .4605 FT /gene="pol" FT CDS join(296. .2378,2378. .4605) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /protein_id="AED99810.1" FT /translation="MASTLISSDNSATLGKDSEVINDTDTSPPDNPPSDHSNPQLTKIL FT DEMSKKPCANINEIRKMIRNFQPQFIQLRNGNRPNAQPRTVDSFEWVVRIQSTVETQLL FT GATNTVPQQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGS FT LQDAAQLNSPQYPQLLAYLFGQLIAIKDRLDLFKPSNPLSLADAIFGFTLAQHAHPRYD FT DHRHAKACTGPLVIPAATNSDCGPCGFVQINANQALTLPLGACLFVNPETVNDQSFQDF FT LWLVFATHHRMPNQMQNNWPFALNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRILL FT AMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLNGLYYYNGATSYI FT VSPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAAKVNANQLDPAMIFGPAIADG FT DGFVYDPLRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLVIANVINSIHNCKT FT KIVNSKLRATFVRRPAGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVTQ FT DAPLDEIYQWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVVVNSPLKTCAAYQ FT GPQLRANAGQRHVERINQCGGSVIYPRLSTARARSSSAIDTMTLTLANQLCYLYKSSDL FT HRQLDIMIPQSYLTFLEWLLRISPNREINSIRHFPSQDNHEIITCTLRNLSKEQEIMLF FT PIKDIIQANRRVNAYARNLLDASPLPDFALQQMLLPNTANDVVCAILLLGEVLWMLRCP FT ISIIVNISRAICRNDSFLKDLSDFNKMLGLTKIPIANCLTELNTLQGRGVTSSDAKRDL FT THRIADVNPHEAKISRENLKEAINQIYREEITKKEIPDTFRQHVFTSPLWVKKGAHHHP FT HFKSYDNRLEFVENVDLDEVLQSRPAVYITQAPKLEHGKTRFIYNCDTVSYIYFDYILN FT YVEGVWSNKHVLLNPDYMNPVIFSTLNYDEYCMLDYTDFNSQHSIESMKQVFSSLLPFL FT PTSMHRILQWCVTSFDNMYINNTHWNSTLPSGHRATTFINSVLNRAYLLPFLQVSNAFH FT TGDDVLLCGKADYGTLINTVPYELNKTKQSFGPSAEFLRLHKHNDQVSGYPARAISSLV FT SGNWLSFANPLWQPSLLSIMQQLYTISARSGLLPYIPVTMKLEVQRRYDLRSRITNGLF FT SGDIVPSGCPCYKSNAALLSAVVPDTVVKGSPNFYDLRTLDTLKQTSPWINSASKYMNL FT LZRRHMESDNKNVLYSIQYLPSKMLPIIDVDPADALPLQKRYHPRSHIAHPLPRDAHLK FT ELRFATCRVGPATAIRLGSLWPANRINLIKPVYV" FT CDS 296. .2425 FT /codon_start=1 FT /gene="pol" FT /product="capsid protein" FT /protein_id="AED99809.1" FT /translation="MASTLISSDNSATLGKDSEVINDTDTSPPDNPPSDHSNPQLTKIL FT DEMSKKPCANINEIRKMIRNFQPQFIQLRNGNRPNAQPRTVDSFEWVVRIQSTVETQLL FT GATNTVPQQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGS FT LQDAAQLNSPQYPQLLAYLFGQLIAIKDRLDLFKPSNPLSLADAIFGFTLAQHAHPRYD FT DHRHAKACTGPLVIPAATNSDCGPCGFVQINANQALTLPLGACLFVNPETVNDQSFQDF FT LWLVFATHHRMPNQMQNNWPFALNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRILL FT AMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLNGLYYYNGATSYI FT VSPIHTDAHPGITAAIESFVDIMVLQAVFSFTGPKVVAAKVNANQLDPAMIFGPAIADG FT DGFVYDPLRPAPPLSAFYSEFIHRPAEQRIFQMAMSQIYGSHAPLVIANVINSIHNCKT FT KIVNSKLRATFVRRPAGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYNIL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVTQ FT DAPLDEIYQWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVVVNSPLKTCAAYQ FT GPSFAPMPGSAMWNE" XX SQ Sequence 4671 BP; 1338 A; 1249 C; 858 G; 1225 T; 1 other; hq607524 Length: 4671 08-MAY-2011 Type: N Check: 8018 .. 1 gctttgaagg agtgacgacc ttctaagccc aggcctcgac agcctggtca 51 gacactcctg gggtccatca ggagacgggt cgctaacgcg aactggatgt 101 cagtgtcaaa agccttgtgc gccatggata cttggtacac ttctacggga 151 gtaggtaacc cgcgaacctt gaacagtcat gaggatttaa aactgttctc 201 cgaactgcta gccttatgca gttgacgtgt attgagaggg cttaattgtt 251 gctttcatac taatattgta tgatcgtcag cttttaatta cgataatggc 301 ttcgacgcta atatcgtctg ataattctgc cacgttaggc aaagatagtg 351 aagttattaa cgacacagat acttcaccac ccgacaatcc acctagtgat 401 cattcaaatc ctcagttaac aaagattcta gatgagatgt ccaaaaaacc 451 atgtgcaaat attaatgaaa taagaaaaat gattagaaat ttccaacctc 501 agtttattca attacgtaac ggcaaccgtc caaatgctca gccccggaca 551 gtagattctt tcgaatgggt agttcgtatt caaagcactg tcgagaccca 601 attacttggt gccacgaata ctgtccccca acaaactctt aacctcgata 651 tctcctttac tgatgattct accactatta ccccagcttc cattccgggc 701 tcaatttcaa tgcttgataa ttctcgtcac atcccagcga tccagagtat 751 gatccaaaac ttcaaggctc gttatttagg ttcattacaa gatgccgccc 801 agctcaattc cccacagtat ccacaactcc tcgcttactt attcggccag 851 ctaatcgcta tcaaggaccg cctcgatctc ttcaagccat caaacccact 901 ttctctcgct gatgccatat tcggtttcac gttagctcaa cacgctcacc 951 cacgttacga tgaccacaga cacgccaaag cttgtacagg accactcgtt 1001 attccagcag cgaccaacag cgactgtggc ccttgcggtt tcgtacagat 1051 taatgcaaat caagccctca ctcttcctct tggtgcttgt cttttcgtca 1101 acccagagac ggttaatgat caatctttcc aagattttct ctggctcgtc 1151 ttcgcaacac accaccgcat gccaaatcaa atgcaaaaca attggccatt 1201 tgctctcaac atcgtctcaa catgcgcggc cccaggtcgt caagctcctc 1251 acgcaggcga actcactgat gagagggtcc ggctcgccct cgatacaggc 1301 catcgcattc ttctcgcaat gttcaacgac gatgaagaaa ctctccgcta 1351 ctaccagcgc aaaggaatcg aaacaatgtt cagaccatgc tgtttctaca 1401 ctgaaggcgg tttactcaga aaagctacca gatacgtttc tatggtccca 1451 ctcaacggct tatattacta caacggtgca acctcatata tcgtctcccc 1501 gatccacact gatgctcatc ctggcattac tgcagcaatc gaatcattcg 1551 ttgacattat ggtcttacaa gcagtattct ctttcacagg tcctaaagta 1601 gttgctgcta aagttaatgc caaccaactc gatccagcca tgatcttcgg 1651 ccctgcaatc gccgacggag atggtttcgt ttacgaccct ctccgcccag 1701 cgcctccact ttccgcgttc tactccgaat tcatccacag accagccgaa 1751 caacgcatct tccagatggc gatgagccaa atctacggtt cacatgctcc 1801 tcttgtcatc gccaacgtca tcaactccat ccacaattgc aagacaaaga 1851 ttgtcaacag caaattacgc gctaccttcg ttcgtcgtcc agccggcgct 1901 cctcatctca aggccgacac agctatcatc aaccgcttcc atgatccaga 1951 actcgcttat gctctcggaa ttctcgccga cggcatcgcc cctcttgatg 2001 gctcacatga atacaacatt ctcgatgaac tcgattactt gttcaacggt 2051 ggcgacatcc gcaattgctt cggcctcaac gccctcaaca ctcgtggttt 2101 gggccaaatc gtccacatcc ggccaaaacg cgaaccagga aagagacccc 2151 gccgcggttt ctacaccaca ctcgatggac aggttcaccc tgtcacacaa 2201 gatgctccac tcgatgagat ttaccaatgg cgcgaccatg gaaatctcac 2251 acgcccatat tcgtgccaca tcctcgacag tcaaggactc gaattcgccg 2301 atgtttccaa cggacggtca cgtggaaaga tcctcgtggt cgtcaactca 2351 ccactcaaaa catgcgctgc ctaccagggc cccagcttcg cgccaatgcc 2401 gggcagcgcc atgtggaacg aataaaccaa tgcgggggca gcgtcatcta 2451 tccgcgcttg agcactgctc gcgcccgcag ctcgtctgcc attgatacga 2501 tgacgttgac cctcgcaaac caactgtgct acctatataa gtcctcggac 2551 ttacaccgac agttggatat catgatacca caatcctact taacatttct 2601 tgaatggcta ctcagaatca gtcccaacag agaaataaat tcaatccgtc 2651 atttcccaag tcaagacaat cacgaaatta taacatgcac tctaagaaat 2701 ctttccaagg aacaagagat catgctattt ccgatcaaag acataattca 2751 agccaaccgt cgtgtaaatg cttacgcacg aaatctcctt gatgcctcac 2801 cgcttcccga ttttgcccta caacagatgc ttctaccaaa tacagcaaat 2851 gatgtagtgt gtgcaatctt actactcggt gaagtactat ggatgcttcg 2901 gtgcccaatc tcaatcatcg taaacatttc acgcgcaatt tgtcgtaacg 2951 atagcttttt gaaagattta tccgatttta ataagatgtt aggcttaact 3001 aagattccta tagctaattg tttgacggaa ctgaacactt tacaaggtcg 3051 aggagtaact tcaagcgatg ccaaaagaga tttgacccac cgaattgccg 3101 atgtcaatcc tcatgaggcg aaaataagta gagagaatct caaagaagca 3151 atcaatcaaa tatacagaga agaaatcact aagaaagaaa tccctgatac 3201 atttagacaa catgtattta catctccatt atgggttaag aaaggagcac 3251 accaccaccc acacttcaag tcttacgaca atcgattgga gtttgttgag 3301 aatgtagatt tggacgaggt cttacaatca cgccccgctg tctacatcac 3351 acaagccccg aaacttgaac atggtaagac tagattcatt tacaattgtg 3401 acacagtcag ctacatttac tttgattaca ttttgaatta cgttgagggt 3451 gtttggtcca ataaacatgt actcttaaac cctgattaca tgaatccagt 3501 tatctttagt actcttaatt acgacgaata ctgcatgtta gattacactg 3551 atttcaactc acagcattcc atcgaaagta tgaagcaagt cttttcaagt 3601 cttttacctt ttctgccaac gtccatgcac cgtatattac agtggtgcgt 3651 cacatcgttt gacaacatgt atatcaacaa tactcactgg aattccacac 3701 tgccatcagg acatagagca actacattta taaactctgt cttgaacagg 3751 gcatacttgt taccattcct acaagtctcc aatgcgtttc acacaggcga 3801 tgatgtactt ttatgcggaa aagcagacta tggcacgctt atcaataccg 3851 taccttatga actcaacaaa actaagcaat cattcggacc ttcagctgaa 3901 ttcctgcgtc ttcataaaca caatgatcaa gtttccggtt atccagcacg 3951 tgcaattagc agtctcgtaa gtggcaattg gttgtcattc gcaaatccac 4001 tatggcaacc ttcgctactg tcaattatgc aacaattgta caccatatca 4051 gcaagatcag gtctattacc atatattcct gtaacaatga agttagaagt 4101 gcagcggcgt tatgatttgc gatcacgaat taccaatgga ttgttctctg 4151 gtgacatagt cccaagcggt tgtccttgtt ataagtcaaa tgctgcttta 4201 ctaagtgcgg tagttcccga cactgtagta aagggttccc ctaactttta 4251 tgacttacgt acattggaca cgttaaaaca aacatcacct tggatcaatt 4301 ctgcatccaa atacatgaac ctcttasaac ggcgccatat ggaatctgat 4351 aacaaaaatg ttttatatag tatccaatat ttaccatcta aaatgttacc 4401 aataattgat gttgaccctg cagatgctct tccattacaa aaacggtatc 4451 acccacgttc tcacatcgca cacccactcc cacgagatgc tcatcttaag 4501 gaattaagat ttgcaacgtg tcgagtgggc ccggctactg cgataagatt 4551 aggatcgctt tggcctgcga acagaatcaa cctaatcaag ccagtctacg 4601 tctaagtacg actgacacaa tcttacataa ctactcggct agagtaggag 4651 agtaatatca actcttacgt c