Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_BF_Lou1_BF5-2008, complete genome.
ACC No: HQ693282
Dated: 2011-09-04 | Length: 2689 | CRC: 1844894732
ID HQ693282; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
XX
AC HQ693282;
XX
DT 05-AUG-2011 (Rel. 109, Created)
DT 04-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE Maize streak virus isolate MSV-A_BF_Lou1_BF5-2008, complete genome.
XX
KW .
XX
OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2689
RX DOI; 10.1128/JVI.00640-11.
RX PUBMED; 21715477.
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA Rybicki E.P., Varsani A.;
RT "Reconstructing the history of maize streak virus strain a dispersal to
RT reveal diversification hot spots and its origin in southern Africa";
RL J. Virol. 85(18):9623-9636(2011).
XX
RN [2]
RP 1-2689
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT ;
RL Submitted (08-DEC-2010) to the INSDC.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL Cape Town, WP 7701, South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_BF_Lou1_BF5-2008"
FT /mol_type="genomic DNA"
FT /country="Burkina Faso"
FT /lat_lon="12.53 N 1.39 W"
FT /collection_date="2008"
FT /db_xref="taxon:10821"
FT CDS 1. .306
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AEL31816.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 317. .1051
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEL31817.1"
FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1560. .2378)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AEL31818.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKGPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA"
XX
SQ Sequence 2689 BP; 688 A; 643 C; 692 G; 666 T; 0 other;
hq693282 Length: 2689 04-SEP-2011 Type: N Check: 1656 ..
1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc
51 tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt
101 tgagctttgt tgcactgatt tgcttttacc tgctttacct ttgggtgctg
151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
201 gctgatattt ggaggacaag ctgtggatag gagcaaccct atccctaatc
251 taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg
301 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
351 cgaattggag taagcgggtg actaagaaga agccctcgtc agctgggctg
401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact
451 ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg
501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
551 agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga
601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aggtgagccg
751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
801 agaccgacgg gcggattggt tcggacattc ctccctcgaa tgcaagttgg
851 aagccctgca agcgcaacat ctacttccac aagttcacga gcgggttggg
901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
951 agagaggagc gttgtacatg gtcattgccc caggcaatgg tcttacattt
1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
1051 atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac
1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg
1151 gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
1201 aaatcaagac ctatctgaat gtactgcctc cgtaggaggc agctcagggg
1251 gagaatacca cttctccccc ggcgacataa tgtaaatgac gcagtttgcc
1301 tcgaaatact ccagctgcgc tggagtcatt tccttcatcc aatcttcatc
1351 cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct
1401 tcttaccata tttggggttt acaatgaaat ccctctgaca gccaactaac
1451 tgtttccaac aaggacagaa tttaaacgga atatcatcta cgatgttgta
1501 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat
1551 tatgaacccc taggcttctg gcccaagtag attttccggt tcttgttggc
1601 ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat
1651 acagaatcca tccattggag gtcagaaatt gcatcctcga gggtataaca
1701 ggtaggttga aggagcatgt atgcttcggg actaacctgg aagatgttag
1751 gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggag
1801 ggtggatgag gattggtgaa ttcttcctga atctcaggga aaagtttatt
1851 ggcagagtat tcaaaatact gcaattttgt ggaccaatca aagggaagct
1901 ctttctggat catggagagg tactcttctt tggaagtagc gtgtgaaata
1951 atgtctcgca ttatttcatc tttagaaggc tttttttcct ttacctctga
2001 atcagatttt cctaggaagg gggacttcct aggaatgaaa gtacctctct
2051 caaacacagc cagaggttcc ttgagaatgt aatccctcac cctgttaact
2101 gacttggcac tctgaatatt tgggtgaaac ccatttatat caaagaacct
2151 tgagtcagat atccttaccg gcttctctgt ctgaagcaat gcatgtaaat
2201 gcaaacttcc atctttatgt gcctctcggg cacatagaat atatttggga
2251 atccaacgaa caacgagctc ccagatcatc tggcaggcga tttcaggatt
2301 ttctggaccc tttggatagg ttaggaacgt gttagcgttc ctgtgtgaga
2351 actgacggtt ggatgaggag gaggccataa ccgacaacgg aggctgaggc
2401 tgatggatgg cagactggga gctccaacct ctatagtata cctgtgcgcc
2451 ttcgaaatcc gccgctccct tgtcttatag tggttgcaaa cgggccggac
2501 cgggccggcc cagcaggaaa agaaggcgcg cactaatatt accgcgcctt
2551 cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcctg
2601 gtcctgcttt gaatgattta tctaaagcag cccattctaa agaatccggt
2651 cccgggcact ataaattgcc taacaagtgc gattcagtc