Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_CF_Bang3_Car41-2008, complete genome.
ACC No: HQ693298
Dated: 2011-09-04 | Length: 2689 | CRC: 724370284
ID HQ693298; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC HQ693298; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_CF_Bang3_Car41-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2689 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2689 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_CF_Bang3_Car41-2008" FT /mol_type="genomic DNA" FT /country="Central African Republic" FT /lat_lon="4.83 N 23.12 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1. .306 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AEL31864.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317. .1051 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEL31865.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560. .2378) FT /codon_start=1 FT /product="RepA" FT /protein_id="AEL31866.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESIDDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA" XX SQ Sequence 2689 BP; 687 A; 641 C; 692 G; 669 T; 0 other; hq693298 Length: 2689 04-SEP-2011 Type: N Check: 2563 .. 1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc 51 tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt 101 tgagctttgt tgcactgatt tgcttttacc tgctttacct ttgggtgctg 151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga 201 gctgatattt ggaggacaag ctgtggatag gagcaaccct atccctaatc 251 taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 301 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt 351 cgaattggag taagcgggtg actaagaaga agccctcgtc agctgggctg 401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact 451 ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg 501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc 551 agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg 651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactattttt 701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aggtgagccg 751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg 801 agaccgacgg gcgtattggt tcggacattc ctccctcgaa tgcaagttgg 851 aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg 901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc 951 agagaggagc gttgtacatg gtcattgccc caggcaatgg tcttacattt 1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta 1051 atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac 1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg 1151 gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1201 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg 1251 gagaatacca cttctccccc ggcgacataa tgtaaatgac gcagtttgcc 1301 tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc 1351 cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct 1401 tcttaccata tttggggttt acaatgaaat ccctctgaca gccaactaac 1451 tgtttccaac aaggacagaa tttaaacgga atatcatcta cgatgttgta 1501 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat 1551 tatgaacccc taggcttctg gcccaagtag attttccggt tcttgttggc 1601 ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat 1651 acagaatcca tccattggag gtcagaaatt gcatcctcga gggtataaca 1701 ggtaggttga aggagcatgt atgcttcggg actaacctgg aagatgttag 1751 gctggagcca atcatcgatt gactcattac aaagtaaatc aggtgaggag 1801 ggtggatgag gattggtgaa ttcttcctga atctcaggaa aaagtttatt 1851 tgcagagtat tcaaaatact gcaattttgt ggaccaatca aagggaagct 1901 ctttctggat catggagagg tactcttctt tggaagtagc gtgtgaaata 1951 atgtctcgca ttatttcatc tttagaaggc tttttttcct ttacctctga 2001 atcagatttt cctaggaagg gggacttcct aggaatgaaa gtacctctct 2051 caaacacagc cagaggttcc ttgagaatgt aatccctcac cctgttaact 2101 gacttggcac tctgaatatt tgggtgaaac ccatttatat caaagaacct 2151 tgagtcagat atccttaccg gcttctctgt ctgaagcaat gcatgtaaat 2201 gcaaacttcc atctttatgt gcctctcggg cacatagaat atatttggga 2251 atccaacgaa caacgagctc ccagatcatc tggcaggcga tttcaggatt 2301 ctctggacac tttggatagg tgaggaacgt gttagcgttc ctgtgtgaga 2351 actgacggtt ggatgaggag gaggccatag ccgacgacgg aggctgaggc 2401 tgagggatgg cagactggga gctccaaact ctatagtata cctgtgcgcc 2451 ttcgaaatcc gccgctccct tgtcttatag tggttgtaaa cgggccggac 2501 cgggccggcc cagcaggaaa agaaggcgcg cactaatatt accgcgcctt 2551 cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcctg 2601 gtcctgcttt gtatgattta tctaaagcag cccattctaa agaatccggt 2651 cccgggcact ataaattgcc taacaagtgc gatgcattc