Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-A_CF_Bang5_Car43-2008, complete genome.

ACC No: HQ693300

Dated: 2011-09-04 | Length: 2689 | CRC: 1804187406

                
ID   HQ693300; SV 1; circular; genomic DNA; STD; VRL; 2689 BP.
XX
AC   HQ693300;
XX
DT   05-AUG-2011 (Rel. 109, Created)
DT   04-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE   Maize streak virus isolate MSV-A_CF_Bang5_Car43-2008, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2689
RX   DOI; 10.1128/JVI.00640-11.
RX   PUBMED; 21715477.
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA   Rybicki E.P., Varsani A.;
RT   "Reconstructing the history of maize streak virus strain a dispersal to
RT   reveal diversification hot spots and its origin in southern Africa";
RL   J. Virol. 85(18):9623-9636(2011).
XX
RN   [2]
RP   1-2689
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA   Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT   ;
RL   Submitted (08-DEC-2010) to the INSDC.
RL   Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL   Cape Town, WP 7701, South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2689
FT                   /organism="Maize streak virus"
FT                   /host="maize"
FT                   /isolate="MSV-A_CF_Bang5_Car43-2008"
FT                   /mol_type="genomic DNA"
FT                   /country="Central African Republic"
FT                   /lat_lon="4.83 N 23.12 E"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:10821"
FT   CDS             1. .306
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="AEL31870.1"
FT                   /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   CDS             317. .1051
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AEL31871.1"
FT                   /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1560. .2378)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="AEL31872.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA"
XX
SQ   Sequence 2689 BP; 684 A; 638 C; 696 G; 671 T; 0 other;

hq693300 Length: 2689  04-SEP-2011  Type: N  Check: 5756  ..

       1  atggatccac agaacgccct gtactatcag ccgcgggtac ccacagcagc
      51  tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt
     101  tgagttttgt tgcactgatt tgcttttacc tgctttacct ttgggtgctg
     151  agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
     201  gctgatattt ggaggacaag ctgtggatag gagcaaccct atccctaatc
     251  taccagcacc accaagtcag ggcaatcccg ggccatttgt tcccggcacg
     301  ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
     351  cgaattggag taagcgggtg cctaagaaga agccttcttc agctgggctg
     401  aagagggcgg gaagcaaggc cgataggcca tccctccaaa tccagacact
     451  ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg
     501  acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
     551  agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga
     601  cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
     651  tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
     701  gcctaccctg acacgctgaa agcgtggccg gccacatgga aggtgagccg
     751  ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
     801  agaccgacgg gcggattggt tcggacattc ctccctcgaa tgcaagttgg
     851  aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg
     901  agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
     951  agagaggagc gttgtacatg gtcattgccc ccggcaatgg tcttacattt
    1001  actgcacatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
    1051  atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac
    1101  attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg
    1151  gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
    1201  aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg
    1251  gagaatacca cttctccccc ggcgacataa tgtaaatgac gcaatttgcc
    1301  tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc
    1351  cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct
    1401  tcttgccata cttggggttt acaatgaaat ccctctgaca gccaactaac
    1451  tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta
    1501  gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat
    1551  tatgaacccc taggcttctg gcccaagtag attttcctgt tcttgttggg
    1601  ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat
    1651  acattatcca tccattggag gtcagaaatt gcatcctcga gggtataaca
    1701  ggtaggttga aggagcatgt aagcttcggg actaacctgg aagatgttag
    1751  gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggat
    1801  tggggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt
    1851  tgcagagtat tcaaaatact gtaattttgt ggaccaatca tagggaagct
    1901  ctttctggat catggagagg tactcttcct tggaagtaga gtgtgaaata
    1951  atgtctcgca ttatttcatc tttggaaggc tttttttcct taacttctga
    2001  atcagatttt cctaggaagg gggacttcct aggaatgaaa gtacctctct
    2051  caaacatagc cagaggttcc ttgaggatgt aatccctcac cctgtttact
    2101  gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct
    2151  tgagtccgat attcttaccg gcttctctgt ttgaagcaat gcatgtaaat
    2201  gcaaacttcc atctttatgt gcctctcggg cacatagaat gtacttggga
    2251  atccaacgaa caacgagctc ccagatcatc tgacaggcga tttcaggatt
    2301  ttctggacac tttggatagg tgaggaacgt gttagcgttc cggtgtgaga
    2351  actgacggtt ggatgaggag gaggccatag ccgacgacgg aggatgaggc
    2401  tgagggatgg cagactggga gctccaaact ctatagcata cctgtgcgcc
    2451  ttcgaaatcc gccgctccct tgtcttatag tggttgtgaa tgggccggac
    2501  cgggccggcc cagcaggaaa agaaggcgcg cactaatatt accgcgcctt
    2551  cttttcctgc gagggcccga tagggcccga gcgatttgat gtaaagcctg
    2601  gtcctgcttt gtatgattta tctaaagcag cccaatctaa agaaaccggt
    2651  cccgggcact ataaattgcc taacaagtgc gattcattc