Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_NG_Oyo_N26-2007, complete genome.
ACC No: HQ693393
Dated: 2011-09-04 | Length: 2690 | CRC: -1542066135
ID HQ693393; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
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AC HQ693393;
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DT 05-AUG-2011 (Rel. 109, Created)
DT 04-SEP-2011 (Rel. 110, Last updated, Version 3)
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DE Maize streak virus isolate MSV-A_NG_Oyo_N26-2007, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2690
RX DOI; 10.1128/JVI.00640-11.
RX PUBMED; 21715477.
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA Rybicki E.P., Varsani A.;
RT "Reconstructing the history of maize streak virus strain a dispersal to
RT reveal diversification hot spots and its origin in southern Africa";
RL J. Virol. 85(18):9623-9636(2011).
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RN [2]
RP 1-2690
RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT ;
RL Submitted (08-DEC-2010) to the INSDC.
RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2690
FT /organism="Maize streak virus"
FT /host="maize"
FT /isolate="MSV-A_NG_Oyo_N26-2007"
FT /mol_type="genomic DNA"
FT /country="Nigeria"
FT /lat_lon="7.84 N 3.94 E"
FT /collection_date="2007"
FT /db_xref="taxon:10821"
FT CDS 1. .306
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AEL32149.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT CDS 317. .1051
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEL32150.1"
FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1560. .2378)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AEL32151.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA"
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SQ Sequence 2690 BP; 687 A; 640 C; 691 G; 672 T; 0 other;
hq693393 Length: 2690 04-SEP-2011 Type: N Check: 4557 ..
1 atggatccac agaacgccct ctattatcag ccgcgggtac ccacagcagc
51 tccggcatcc gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt
101 tgagctttgt tgcactgatt tgcttttacc tgctttacct ttgggtgctg
151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
201 gctgatattt ggaggacaag ctgtggatag gagcaaccct atccctaatc
251 taccagcacc accaagtcag ggcaatcccg ggccatttgt tcccggcacg
301 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
351 cgaattggag taagcgggtg actaagaaga agccctcgtc agctgggctg
401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact
451 ccagcatgct gggaccacca tgataactgt cccatccgga ggagtatgtg
501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
551 agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga
601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aggtgagccg
751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg
801 agaccgacgg gcggattggt tcggacattc ctccttcgaa tgcaagttgg
851 aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg
901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
951 agagaggagc gttgtacatg gtcattgccc ccggcaatgg tcttacattt
1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
1051 atgaataaaa acttccgttt tattatatct gatgaatgct gaaagcttac
1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg
1151 gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
1201 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg
1251 gagaatacca cttctccccc ggcgacataa tgtaaatgac gcagtttgcc
1301 tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc
1351 cgagttggcg aggattattg taggcttaga cttcttctgc accttcttct
1401 tcttaccata tttggggttt acaatgaaat ccctctgaca gccaactaac
1451 tgtttccaac aaggacagaa tttaaacgga atatcatcta cgatgttgta
1501 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat
1551 tatgaacccc taggcttctg gcccaagtag attttccggt tcttgttggc
1601 ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat
1651 acagaatcca tccattggag gtcagaaatt gcatcctcga gggtataaca
1701 ggtaggttga aggagcatgt atgcttcggg actaacctgg aagatgttag
1751 gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggag
1801 ggtggatgag gattggtgaa ctcttcctga atctcaggaa aaagtttatt
1851 ggcagagtat tcaaaatact gcaattttgt ggaccaatca aagggaagct
1901 ctttctggat catggagagg tactcttctt tggaagtagc gtgtgaaata
1951 atgtctcgca ttatttcatc tttagaaggc tttttttcct ttacctctga
2001 atcagatttt cctaggaagg gtgacttcct aggaatgaaa gtacctctct
2051 caaatacagc cagaggttcc ttgagaatgt aatccctcac cctgttaact
2101 gacttggcac tctgaatatt tgggtgaaac ccatttatat caaagaacct
2151 tgagtcagat atccttaccg gcttttctgt ctgaagcaag gcatgtaaat
2201 gcaaacttcc atctttatgt gcctctcggg cacatagaat atatttggga
2251 atccaacgaa caacgagctc ccagatcatc tggcaggcga tttcaggatt
2301 ttctggacac tttggatagg taaggaacgt gttagcgttc ctgtgtgaga
2351 actgacggtt ggatgaggag gaggccatag ccgacgacgg aggctgaggc
2401 tgagggatgg cagactggga gctccaaact ctatagtata cctgtgcgcc
2451 ttcgaaatcc gccgctcccc ttgtcttata gtggttgtaa acgggccgga
2501 ccgggccggc ccagcaggaa aagaaggcgc gcactaatat taccgcgcct
2551 tcttttcctg cgagggcccg gtagggcccg agcgatttga tgtaaagcct
2601 ggtcctgctt tgtatgattt atctaaagca gcccattcta aagaatccgg
2651 tcccgggcac tataaattgc ctaacaagtg cgattcattc