Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Blu4_Ta31-2008, complete genome.
ACC No: HQ693403
Dated: 2011-09-04 | Length: 2690 | CRC: -2040969396
ID HQ693403; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC HQ693403; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Blu4_Ta31-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2690 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2690 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Blu4_Ta31-2008" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="30.6 S 30.51 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1. .306 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AEL32179.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVSWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317. .1051 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEL32180.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1561. .2379) FT /codon_start=1 FT /product="RepA" FT /protein_id="AEL32181.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQELENLLGPEA" XX SQ Sequence 2690 BP; 693 A; 637 C; 687 G; 673 T; 0 other; hq693403 Length: 2690 04-SEP-2011 Type: N Check: 3785 .. 1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc 51 tccgacatcc ggaggagtgt cgtggagtcg cgtaggcgag gtagctattt 101 tgagctttgt tgcattgatt tgcttttacc tgctttacct ttgggtgctg 151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga 201 gctgatattt ggtggacaag ctgtggatag gagcaaccct atccctaatc 251 taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 301 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt 351 cgaattggaa taagcgggtg cctaagaaga agccatcttc agctgggctg 401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagacact 451 ccagcatgcg gggaccacca tgataacggt cccctctgga ggagtatgtg 501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc 551 agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgccga 601 cgcggctgcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg 651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt 701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aagtgagccg 751 ggagctgtgt catcgcttcg tggtgaaacg gcgatggttg ttcaacatgg 801 agaccgacgg tcggattggt tcggatatcc ctccctcgaa tacaagttgg 851 aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc 951 agagaggagc cttgtacatg gtcattgccc ccggcaatgg ccttacattt 1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta 1051 atgaataaaa actcccgttt tattatatct gatgaatgct gaaagcttac 1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat caatacaggg 1151 gggtagtcgg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa 1201 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg 1251 ggagaatacc acttctcccc cggcgacata atgtaaatga tgcagtttgc 1301 ctcgaaatac tccagctgcc ctggagtcat ttccttcatc caatcttcat 1351 ccgagttggc gaggattatt gtaggcttag acttcttctg cacctttttc 1401 ttcttaccat acttggggtt tacaatgaaa tccctctgac agccaactaa 1451 ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt 1501 agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa 1551 ttatgaaccc ctaggcttct ggcccaagta gattttccag ttcttgttgg 1601 gccgacgatg tagaggctct gctttcttga tctttcatct gatgactgga 1651 tacagaatcc atccattgga ggtcagaaat tgcatcctcg agggtataac 1701 aggtaggttg aaggagcatg taagcttcgg gactaacctg gaagatgtta 1751 ggctggagcc aatcattgat tgactcatta caaagcaaat caggtgagga 1801 gggtggatga ggattggtga actcttcctg aatctcagga aaaagcttat 1851 ttgcagagta ttcaaaatac tgcaattttg tggaccaatc aaagggaagc 1901 tctttctgga tcatggagag gtactcttct ttcgaagtag cgtgtgaaat 1951 aatgtctctc attatttcat ctttggaagg ctttttttcc tttacctctg 2001 aatcagattt tcctaggaag ggggacttcc taggaatgaa agtacctctc 2051 tcaaacacag ccagaggttc cttgaggatg taatccctca ccctgttaac 2101 tgacttggca ctctgaatgt ttgggtgaaa cccatttata tcaaagaacc 2151 ttgagtcaga tatccttacc ggcttctctg tttgaagcaa tgcatgtaaa 2201 tgcaaacttc catctttatg tgcctctcgg gcacatagaa tgtacttggg 2251 aatccaacga acaacgagct cccagatcat ctgacaggcg atttcaggat 2301 tttctggaca ctttggatag gttaggaacg tgttagcgtt ccggtgtgag 2351 aactgacggt tggatgagga ggaggccata gccgacgacg gaggttgagg 2401 ctgagggatg gcagactggg agctccaaac tctatagtat acctgtgcgc 2451 cttcgaaatc cgccgctccc ttgtcttata gtggttgtaa atgggccgga 2501 ccgggccggc ccagcaggaa aagaaggcgc gcactaatat taccgcgcct 2551 tcttttcctg cgagggcccg gtagggaccg agcgctttga tttaaagcct 2601 ggtcctgctt tgtatgattt atctaaagca gcccaatcta aagaaaccgg 2651 tcccgggcac tataaattgc ctaacaagtg cgattcattc