Sequence of DPV Maize streak virus

Maize streak virus isolate MSV-A_ZA_Boo_D1-2006, complete genome.

ACC No: HQ693405

Dated: 2011-09-04 | Length: 2690 | CRC: -695597644

                
ID   HQ693405; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
XX
AC   HQ693405;
XX
DT   05-AUG-2011 (Rel. 109, Created)
DT   04-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE   Maize streak virus isolate MSV-A_ZA_Boo_D1-2006, complete genome.
XX
KW   .
XX
OS   Maize streak virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2690
RX   DOI; 10.1128/JVI.00640-11.
RX   PUBMED; 21715477.
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G.,
RA   Rybicki E.P., Varsani A.;
RT   "Reconstructing the history of maize streak virus strain a dispersal to
RT   reveal diversification hot spots and its origin in southern Africa";
RL   J. Virol. 85(18):9623-9636(2011).
XX
RN   [2]
RP   1-2690
RA   Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P.,
RA   Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K.,
RA   Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A.,
RA   Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B.,
RA   Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M.,
RA   Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.;
RT   ;
RL   Submitted (08-DEC-2010) to the INSDC.
RL   Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch,
RL   Cape Town, WP 7701, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2690
FT                   /organism="Maize streak virus"
FT                   /host="maize"
FT                   /isolate="MSV-A_ZA_Boo_D1-2006"
FT                   /mol_type="genomic DNA"
FT                   /country="South Africa"
FT                   /lat_lon="29.86 S 30.95 E"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:10821"
FT   CDS             1. .306
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /protein_id="AEL32185.1"
FT                   /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   CDS             317. .1051
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AEL32186.1"
FT                   /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   CDS             complement(1561. .2379)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /protein_id="AEL32187.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML
FT                   LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA"
XX
SQ   Sequence 2690 BP; 689 A; 633 C; 693 G; 675 T; 0 other;

hq693405 Length: 2690  04-SEP-2011  Type: N  Check: 7130  ..

       1  atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc
      51  tccgacatcc ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt
     101  tgagctttgt tgcattgatt tgcttttacc tgctttacct ttgggtgctg
     151  agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga
     201  gctgatattt ggtggacaag ctgtggatag gagcaaccct atccctaatc
     251  tacctgcacc accaagtcag ggcaatcccg ggccttttgt tccaggcacg
     301  ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt
     351  cgaattggag taagcgggtg cctaagaaga agccttcttc agctgggctg
     401  aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagaccct
     451  ccagcatgct gggaccacca tgataacggt cccatccgga ggagtatgtg
     501  acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc
     551  agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgtagctga
     601  cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg
     651  tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt
     701  gcctaccctg acacgctaaa agcgtggccg gccacatgga aagtgagccg
     751  ggagctgtgt catcgcttcg tggtgaaacg gcggtggttg ttcaacatgg
     801  agaccgacgg tcggattggt tcggatatcc ctccctcgaa tgcaagttgg
     851  aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg
     901  agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc
     951  agagaggagc tttgtacatg gtcattgccc ccggcaatgg ccttacattt
    1001  actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta
    1051  atgaataaaa acgcccgttt tattatattt gatgaatgct gaaagcttac
    1101  attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaaa caatacaggg
    1151  gggtagtcgg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa
    1201  aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaagg
    1251  ggagaatacc atttctcccc cggcgacata atgtaaatga tgcagtttgc
    1301  ctcgaaatac tccagctgcc ctggagtcat ttccttcatc caatcttcat
    1351  ccgagttggc gaggattatt gtaggcttag acttcttctg caccttcttc
    1401  ttcttaccat acttggggtt tacaatgaaa tccctctgac agccaactaa
    1451  ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt
    1501  agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa
    1551  ttatgaaccc ctaggcttct ggcccaagta gattttccgg ttcttgttgg
    1601  gccgacgatg tagaggctct gctttcttga tctttcatct gatgactgga
    1651  tagagaatcc atccattgga ggtcagaaat tgcatcctcg agggtataac
    1701  aggtaggttg aaggagcatg taagcttcgg gactaacctg gaagatgtta
    1751  ggctggagcc aatcattgat tgactcatta caaagtaaat caggtgagga
    1801  gggtggatga ggattggtga actcttcctg aatctcaggg aaaagcttat
    1851  ttgcagagta ttcaaaatac tgcaattttg tggaccaatc aaagggaagc
    1901  tctttctgga tcatggagag gtactcttct tttgaagtag cgtgtgaaat
    1951  aatgtctcgc attatttcat ctttagaagg ctttttttcc tttacctctg
    2001  aatcagattt tcctaggaag ggggacttcc taggaatgaa agtacctctc
    2051  tcaaacacag ccagaggttc cttgagaatg taatccctca cccggttaac
    2101  tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc
    2151  ttgagtcaga tatccttacc ggcttctctg tctggagcaa tgcatgtaaa
    2201  tgcaaacttc catctttatg tgcctctcgg gcacatagaa tgtacttggg
    2251  aatccaacga acgacgagct cccagatcat ctgacaggcg atttcaggat
    2301  tttctggaca ctttggatag gttaggaacg tgttagcgtt cctgtgtgag
    2351  aactgacggt tggatgagga ggaggccata gccgacgacg gaggctgagg
    2401  ctgagggatg gcagactggg agctctaaac tctatagtat acctgtgcgc
    2451  cttcgaaatc cgccgctccc ttgtcttata gtggttgtaa atgggccgga
    2501  ccgggccggc ccagcaggaa aagaaggcgc gcactaatat taccgcgcct
    2551  tcttttcctg cgagggcccg gtagggaccg agcgctttga tttaaagctt
    2601  ggtcctgctt tgtatgattt atctaaagca gcccaatcta aagaaaccgg
    2651  tcccgggcac tataaattgc ctaacaagtg cgattcattc