Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-A_ZA_Boo_D1-2006, complete genome.
ACC No: HQ693405
Dated: 2011-09-04 | Length: 2690 | CRC: -695597644
ID HQ693405; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC HQ693405; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Boo_D1-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2690 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2690 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Boo_D1-2006" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="29.86 S 30.95 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 1. .306 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AEL32185.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317. .1051 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AEL32186.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1561. .2379) FT /codon_start=1 FT /product="RepA" FT /protein_id="AEL32187.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2690 BP; 689 A; 633 C; 693 G; 675 T; 0 other; hq693405 Length: 2690 04-SEP-2011 Type: N Check: 7130 .. 1 atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc 51 tccgacatcc ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt 101 tgagctttgt tgcattgatt tgcttttacc tgctttacct ttgggtgctg 151 agagacctta tcttagttct gaaggctcga caaggcagat ccacggagga 201 gctgatattt ggtggacaag ctgtggatag gagcaaccct atccctaatc 251 tacctgcacc accaagtcag ggcaatcccg ggccttttgt tccaggcacg 301 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt 351 cgaattggag taagcgggtg cctaagaaga agccttcttc agctgggctg 401 aagagggctg gaagcaaggc cgataggcca tccctccaaa tccagaccct 451 ccagcatgct gggaccacca tgataacggt cccatccgga ggagtatgtg 501 acctcatcaa cacctatgcc cgaggatctg acgagggcaa ccgccacacc 551 agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgtagctga 601 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg 651 tgtatgacac cactcccggc ggacaagctc cgaccccgca aactatattt 701 gcctaccctg acacgctaaa agcgtggccg gccacatgga aagtgagccg 751 ggagctgtgt catcgcttcg tggtgaaacg gcggtggttg ttcaacatgg 801 agaccgacgg tcggattggt tcggatatcc ctccctcgaa tgcaagttgg 851 aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 901 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc 951 agagaggagc tttgtacatg gtcattgccc ccggcaatgg ccttacattt 1001 actgcccatg ggcagacccg tctgtacttt aagagtgttg gcaaccagta 1051 atgaataaaa acgcccgttt tattatattt gatgaatgct gaaagcttac 1101 attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaaa caatacaggg 1151 gggtagtcgg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1201 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaagg 1251 ggagaatacc atttctcccc cggcgacata atgtaaatga tgcagtttgc 1301 ctcgaaatac tccagctgcc ctggagtcat ttccttcatc caatcttcat 1351 ccgagttggc gaggattatt gtaggcttag acttcttctg caccttcttc 1401 ttcttaccat acttggggtt tacaatgaaa tccctctgac agccaactaa 1451 ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt 1501 agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa 1551 ttatgaaccc ctaggcttct ggcccaagta gattttccgg ttcttgttgg 1601 gccgacgatg tagaggctct gctttcttga tctttcatct gatgactgga 1651 tagagaatcc atccattgga ggtcagaaat tgcatcctcg agggtataac 1701 aggtaggttg aaggagcatg taagcttcgg gactaacctg gaagatgtta 1751 ggctggagcc aatcattgat tgactcatta caaagtaaat caggtgagga 1801 gggtggatga ggattggtga actcttcctg aatctcaggg aaaagcttat 1851 ttgcagagta ttcaaaatac tgcaattttg tggaccaatc aaagggaagc 1901 tctttctgga tcatggagag gtactcttct tttgaagtag cgtgtgaaat 1951 aatgtctcgc attatttcat ctttagaagg ctttttttcc tttacctctg 2001 aatcagattt tcctaggaag ggggacttcc taggaatgaa agtacctctc 2051 tcaaacacag ccagaggttc cttgagaatg taatccctca cccggttaac 2101 tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc 2151 ttgagtcaga tatccttacc ggcttctctg tctggagcaa tgcatgtaaa 2201 tgcaaacttc catctttatg tgcctctcgg gcacatagaa tgtacttggg 2251 aatccaacga acgacgagct cccagatcat ctgacaggcg atttcaggat 2301 tttctggaca ctttggatag gttaggaacg tgttagcgtt cctgtgtgag 2351 aactgacggt tggatgagga ggaggccata gccgacgacg gaggctgagg 2401 ctgagggatg gcagactggg agctctaaac tctatagtat acctgtgcgc 2451 cttcgaaatc cgccgctccc ttgtcttata gtggttgtaa atgggccgga 2501 ccgggccggc ccagcaggaa aagaaggcgc gcactaatat taccgcgcct 2551 tcttttcctg cgagggcccg gtagggaccg agcgctttga tttaaagctt 2601 ggtcctgctt tgtatgattt atctaaagca gcccaatcta aagaaaccgg 2651 tcccgggcac tataaattgc ctaacaagtg cgattcattc